Clone Sequence Records
BO04032.3prime Sequence
446 bp (445 high quality bases) assembled on 2005-12-01
> BO04032.3prime
ATGGTCTAGAAAGCTTGCTTGCACGGTTTTCGTCTCCACAGATCCGGTCA
AGGCAATGCACTCGATCTCCACCAGAGCATCCATGGGCAGCTTGGCCACC
TGGAAACAGCTGCGGGCCGGGAAATCCTTATTGAACACCCGCTTGTAGAC
CTCATTGACTGCCCCGAAATCGTTGAGATCCTTCAAGAACACTGTGTTCT
TGATGACTTTGTCCACTCCGGAATCGGCCGCCTTTAGAACAGCCTCCAGA
TTCTCCAATGCCTTCTGCGCTTGTTCAGTGGGTCCTCCAGGAACCAGTTT
CATGGTGTCCTTGTCCAGACCCAGACATCCGGACACATACACAGTACGAT
CGGCCACCACAGCCTGGTTGTAGGGAGCCACTGGCTTGGCAGCATTTGCA
GTGCTGATAAGTTTCCTCACAATCGTCGACATGTCGACTGATAACT
BO04032.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15261-PA | 417 | CG15261-RA | 1..414 | 432..19 | 2070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UK114-RB | 610 | CG15261-RB | 106..519 | 432..19 | 2070 | 100 | Minus |
UK114-RA | 553 | CG15261-RA | 106..519 | 432..19 | 2070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:27:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15274620..15274849 | 138..367 | 1150 | 100 | Plus |
2L | 23513712 | 2L | 15274272..15274391 | 19..138 | 600 | 100 | Plus |
2L | 23513712 | 2L | 15274922..15274986 | 368..432 | 325 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 05:27:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 4064..4091 | 149..176 | 104 | 85.7 | Plus |
BO04032.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:56 Download gff for
BO04032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15261-PA | 1..417 | 18..432 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:12 Download gff for
BO04032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15261-PA | 1..417 | 18..432 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:52:40 Download gff for
BO04032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UK114-RA | 93..527 | 12..444 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:46 Download gff for
BO04032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UK114-RA | 93..527 | 12..444 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:46 Download gff for
BO04032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15274264..15274390 | 12..137 | 97 | <- | Plus |
2L | 15274620..15274849 | 138..367 | 100 | <- | Plus |
2L | 15274922..15274999 | 368..444 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:52:40 Download gff for
BO04032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15274264..15274390 | 12..137 | 97 | <- | Plus |
arm_2L | 15274620..15274849 | 138..367 | 100 | <- | Plus |
arm_2L | 15274922..15274999 | 368..444 | 93 | | Plus |
BO04032.5prime Sequence
446 bp (445 high quality bases) assembled on 2005-12-01
> BO04032.5prime
GAAGTTATCAGTCGACATGTCGACGATTGTGAGGAAACTTATCAGCACTG
CAAATGCTGCCAAGCCAGTGGCTCCCTACAACCAGGCTGTGGTGGCCGAT
CGTACTGTGTATGTGTCCGGATGTCTGGGTCTGGACAAGGACACCATGAA
ACTGGTTCCTGGAGGACCCACTGAACAAGCGCAGAAGGCATTGGAGAATC
TGGAGGCTGTTCTAAAGGCGGCCGATTCCGGAGTGGACAAAGTCATCAAG
AACACAGTGTTCTTGAAGGATCTCAACGATTTCGGGGCAGTCAATGAGGT
CTACAAGCGGGTGTTCAATAAGGATTTCCCGGCCCGCAGCTGTTTCCAGG
TGGCCAAGCTGCCCATGGATGCTCTGGTGGAGATCGAGTGCATTGCCTTG
ACCGGATCTGTGGAGACGAAAACCGTGCAAGCAAGCTTTCTAGACC
BO04032.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15261-PA | 417 | CG15261-RA | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UK114-RB | 610 | CG15261-RB | 106..519 | 17..430 | 2070 | 100 | Plus |
UK114-RA | 553 | CG15261-RA | 106..519 | 17..430 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:30:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15274620..15274849 | 311..82 | 1150 | 100 | Minus |
2L | 23513712 | 2L | 15274272..15274391 | 430..311 | 600 | 100 | Minus |
2L | 23513712 | 2L | 15274922..15274986 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 18:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 4064..4091 | 300..273 | 104 | 85.7 | Minus |
BO04032.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:57 Download gff for
BO04032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15261-PA | 1..417 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:13 Download gff for
BO04032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15261-PA | 1..417 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:57:46 Download gff for
BO04032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UK114-RA | 93..527 | 5..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:11:59 Download gff for
BO04032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UK114-RA | 93..527 | 5..437 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:11:59 Download gff for
BO04032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15274264..15274390 | 312..437 | 97 | <- | Minus |
2L | 15274620..15274849 | 82..311 | 100 | <- | Minus |
2L | 15274922..15274999 | 5..81 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:57:46 Download gff for
BO04032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15274264..15274390 | 312..437 | 97 | <- | Minus |
arm_2L | 15274620..15274849 | 82..311 | 100 | <- | Minus |
arm_2L | 15274922..15274999 | 5..81 | 93 | | Minus |
BO04032.complete Sequence
448 bp (448 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629607
> BO04032.complete
GAAGTTATCAGTCGACATGTCGACGATTGTGAGGAAACTTATCAGCACTG
CAAATGCTGCCAAGCCAGTGGCTCCCTACAACCAGGCTGTGGTGGCCGAT
CGTACTGTGTATGTGTCCGGATGTCTGGGTCTGGACAAGGACACCATGAA
ACTGGTTCCTGGAGGACCCACTGAACAAGCGCAGAAGGCATTGGAGAATC
TGGAGGCTGTTCTAAAGGCGGCCGATTCCGGAGTGGACAAAGTCATCAAG
AACACAGTGTTCTTGAAGGATCTCAACGATTTCGGGGCAGTCAATGAGGT
CTACAAGCGGGTGTTCAATAAGGATTTCCCGGCCCGCAGCTGTTTCCAGG
TGGCCAAGCTGCCCATGGATGCTCTGGTGGAGATCGAGTGCATTGCCTTG
ACCGGATCTGTGGAGACGAAAACCGTGCAAGCAAGCTTTCTAGACCAT
BO04032.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UK114-RB | 417 | CG15261-PB | 1..414 | 17..430 | 2070 | 100 | Plus |
UK114-RA | 417 | CG15261-PA | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UK114-RB | 610 | CG15261-RB | 106..519 | 17..430 | 2070 | 100 | Plus |
UK114-RA | 553 | CG15261-RA | 106..519 | 17..430 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15274620..15274849 | 311..82 | 1150 | 100 | Minus |
2L | 23513712 | 2L | 15274272..15274391 | 430..311 | 600 | 100 | Minus |
2L | 23513712 | 2L | 15274922..15274986 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 4064..4091 | 300..273 | 104 | 85.7 | Minus |
BO04032.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:18 Download gff for
BO04032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UK114-RA | 1..417 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:46 Download gff for
BO04032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UK114-RA | 30..464 | 5..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:01 Download gff for
BO04032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UK114-RA | 106..519 | 17..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:18 Download gff for
BO04032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UK114-RA | 30..464 | 5..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:18 Download gff for
BO04032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UK114-RA | 106..519 | 17..432 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:18 Download gff for
BO04032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15274268..15274390 | 312..432 | 98 | <- | Minus |
2L | 15274620..15274849 | 82..311 | 100 | <- | Minus |
2L | 15274922..15274986 | 17..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:01 Download gff for
BO04032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15274268..15274390 | 312..432 | 98 | <- | Minus |
arm_2L | 15274620..15274849 | 82..311 | 100 | <- | Minus |
arm_2L | 15274922..15274986 | 17..81 | 100 | | Minus |
BO04032.pep Sequence
Translation from 16 to 448
> BO04032.pep
MSTIVRKLISTANAAKPVAPYNQAVVADRTVYVSGCLGLDKDTMKLVPGG
PTEQAQKALENLEAVLKAADSGVDKVIKNTVFLKDLNDFGAVNEVYKRVF
NKDFPARSCFQVAKLPMDALVEIECIALTGSVETKTVQASFLDH
BO04032.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UK114-PB | 138 | CG15261-PB | 1..138 | 1..138 | 691 | 100 | Plus |
UK114-PA | 138 | CG15261-PA | 1..138 | 1..138 | 691 | 100 | Plus |