Clone BO04033 Report

Search the DGRC for BO04033

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:33
Vector:pDNR-Dual
Associated Gene/TranscripteEF1delta-RB
Protein status:BO04033.pep: validated full length
Sequenced Size:802

Clone Sequence Records

BO04033.3prime Sequence

800 bp (799 high quality bases) assembled on 2005-12-01

> BO04033.3prime
ATGGTCTAGAAAGCTTGCGATTTTGTTGAACGCAGCGATGTCAACACTTT
GGACAAAGTCTTCCAGTTTCTCGATCTCCTCAGTCAGCCAATCGATGGAA
ACCTTATCATCCTCAACCACGCATGAAATGCTCAGTTTCTGAATGCCAAA
GGCAACTGGCACGAATTTGGAAGCTCCCCACAGTAGACCGTCCTGGGTGA
TTTTGCGGATTTCCGTCTCCATAACCTTCAGATCGGTCTCATCGTCCCAC
GGCTTAACATCCAGAATGATGTTCGACTTGGCAATAATTTGAACTTTCTT
GGCCTTCTTGGCAGCATAGGCTGCCAGCCTTTCCTCCCTTATGCGGGCGG
CCTCTCCATCCTCCTCCTCGCTGTCCGATCCAAATAGATCCACATCGTCA
TCGTCGTCGTTCGCTTCTGGTTTTTTCGCTTCGACCTCGGGCTCTTTCGA
CACTCCATTCGTCAATTTCAGCTGAGTTTCCAAGCGCTTCACTGTGGCAG
TCAAAAGTTCGTTCAACAAGGAAACCTGGGTCTTCAACTCCTTGTGTTCA
CCCTCCAATTGGGCCAGACGCTTGGCCAGCTCGGAATTTAAGCCATCGTC
CAGAGTAACGCCATCGATCTTTTCCAGCGAGTTCTGTATGTGTTCCCTAG
CCTTTGCGATTTCGCTTACTAATGGGCTGTAGTGGCTGCGATCAGTTACC
TTCTGGGGACCCTCGTAGAATCGCTTCTCGGCAAGATCGTAGCGGCTCTT
GTCAGCCCAGAATTTGTCCAATGCCTCTACTTTCATGTCGACTGATAACT

BO04033.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4912-PB 771 eEF1delta-RB 1..768 786..19 3840 100 Minus
CG4912-PA 690 eEF1delta-RA 85..687 621..19 3015 100 Minus
CG4912-PA 690 eEF1delta-RA 1..87 786..700 435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
eEF1delta-RB 928 CG4912-RB 67..834 786..19 3840 100 Minus
eEF1delta-RA 847 CG4912-RA 151..753 621..19 3015 100 Minus
eEF1delta-RA 847 CG4912-RA 67..153 786..700 435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10233755..10234356 620..19 3010 100 Minus
2L 23513712 2L 10232573..10232663 786..696 455 100 Minus
2L 23513712 2L 10233478..10233561 702..619 420 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:27:06 has no hits.

BO04033.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:58 Download gff for BO04033.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4912-PB 1..771 15..786 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:15 Download gff for BO04033.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4912-PB 1..771 15..786 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:31:55 Download gff for BO04033.3prime
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 67..838 14..786 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:05 Download gff for BO04033.3prime
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 67..838 14..786 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:05 Download gff for BO04033.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10232573..10232659 700..786 100 -> Minus
2L 10233481..10233561 619..699 100 -> Minus
2L 10233757..10234360 14..618 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:31:55 Download gff for BO04033.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10232573..10232659 700..786 100 -> Minus
arm_2L 10233481..10233561 619..699 100 -> Minus
arm_2L 10233757..10234360 14..618 99   Minus

BO04033.5prime Sequence

800 bp (776 high quality bases) assembled on 2005-12-01

> BO04033.5prime
GAAGTTATCAGTCGACATGAAAGTAGAGGCATTGGACAAATTCTGGGCTG
ACAAGAGCCGCTACGATCTTGCCGAGAAGCGATTCTACGAGGGTCCCCAG
AAGGTAACTGATCGCAGCCACTACAGCCCATTAGTAAGCGAAATCGCAAA
GGCTAGGGAACACATACAGAACTCGCTGGAAAAGATCGATGGCGTTACTC
TGGACGATGGCTTAAATTCCGAGCTGGCCAAGCGTCTGGCCCAATTGGAG
GGTGAACACAAGGAGTTGAAGACCCAGGTTTCCTTGTTGAACGAACTTTT
GACTGCCACAGTGAAGCGCTTGGAAACTCAGCTGAAATTGACGAATGGAG
TGTCGAAAGAGCCCGAGGTCGAAGCGAAAAAACCAGAAGCGAACGACGAC
GATGACGATGTGGATCTATTTGGATCGGACAGCGAGGAGGAGGATGGAGA
GGCCGCCCGCATAAGGGAGGAAAGGCTGGCAGCCTATGCTGCCAAGAAGG
CCAAGAAAGTTCAAATTATTGCCAAGTCGAACATCATTCTGGATGTTAAG
CCGTGGGACGATGAGACCGATCTGAAGGTTATGGAGACGGAAATCCGCAA
AATCACCCAGGACGGTCTACTGTGGGGAGCTTCCAAATTCGTGCCAGTTG
CCTTTGGCATTCAGAAACTGAGCATTTCATGCGTGGTTGAGGATGATAAG
GTTTCCATCGATTGGCTGACTGAGGAGATCGAGAAACTGGAAGACTTTGT
CCAAAGTGTTGACATCGCTGCGTTCAACAAAATCGCAAGCTTTCTAGACC

BO04033.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4912-PB 771 eEF1delta-RB 1..768 17..784 3840 100 Plus
CG4912-PA 690 eEF1delta-RA 85..687 182..784 3015 100 Plus
CG4912-PA 690 eEF1delta-RA 1..87 17..103 435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
eEF1delta-RB 928 CG4912-RB 67..834 17..784 3840 100 Plus
eEF1delta-RA 847 CG4912-RA 151..753 182..784 3015 100 Plus
eEF1delta-RA 847 CG4912-RA 67..153 17..103 435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10233755..10234356 183..784 3010 100 Plus
2L 23513712 2L 10232573..10232663 17..107 455 100 Plus
2L 23513712 2L 10233478..10233561 101..184 420 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:00:47 has no hits.

BO04033.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:59 Download gff for BO04033.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4912-PB 1..771 17..788 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:16 Download gff for BO04033.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4912-PB 1..771 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:36:39 Download gff for BO04033.5prime
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 67..838 17..789 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:26 Download gff for BO04033.5prime
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 67..838 17..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:50:26 Download gff for BO04033.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10232573..10232659 17..103 100 -> Plus
2L 10233481..10233561 104..184 100 -> Plus
2L 10233757..10234360 185..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:36:39 Download gff for BO04033.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10232573..10232659 17..103 100 -> Plus
arm_2L 10233481..10233561 104..184 100 -> Plus
arm_2L 10233757..10234360 185..789 99   Plus

BO04033.complete Sequence

802 bp (802 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629608

> BO04033.complete
GAAGTTATCAGTCGACATGAAAGTAGAGGCATTGGACAAATTCTGGGCTG
ACAAGAGCCGCTACGATCTTGCCGAGAAGCGATTCTACGAGGGTCCCCAG
AAGGTAACTGATCGCAGCCACTACAGCCCATTAGTAAGCGAAATCGCAAA
GGCTAGGGAACACATACAGAACTCGCTGGAAAAGATCGATGGCGTTACTC
TGGACGATGGCTTAAATTCCGAGCTGGCCAAGCGTCTGGCCCAATTGGAG
GGTGAACACAAGGAGTTGAAGACCCAGGTTTCCTTGTTGAACGAACTTTT
GACTGCCACAGTGAAGCGCTTGGAAACTCAGCTGAAATTGACGAATGGAG
TGTCGAAAGAGCCCGAGGTCGAAGCGAAAAAACCAGAAGCGAACGACGAC
GATGACGATGTGGATCTATTTGGATCGGACAGCGAGGAGGAGGATGGAGA
GGCCGCCCGCATAAGGGAGGAAAGGCTGGCAGCCTATGCTGCCAAGAAGG
CCAAGAAAGTTCAAATTATTGCCAAGTCGAACATCATTCTGGATGTTAAG
CCGTGGGACGATGAGACCGATCTGAAGGTTATGGAGACGGAAATCCGCAA
AATCACCCAGGACGGTCTACTGTGGGGAGCTTCCAAATTCGTGCCAGTTG
CCTTTGGCATTCAGAAACTGAGCATTTCATGCGTGGTTGAGGATGATAAG
GTTTCCATCGATTGGCTGACTGAGGAGATCGAGAAACTGGAAGACTTTGT
CCAAAGTGTTGACATCGCTGCGTTCAACAAAATCGCAAGCTTTCTAGACC
AT

BO04033.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
eEF1delta-RB 771 CG4912-PB 1..768 17..784 3840 100 Plus
eEF1delta-RA 690 CG4912-PA 85..687 182..784 3015 100 Plus
eEF1delta-RA 690 CG4912-PA 1..87 17..103 435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
eEF1delta-RB 928 CG4912-RB 67..834 17..784 3840 100 Plus
eEF1delta-RA 847 CG4912-RA 151..753 182..784 3015 100 Plus
eEF1delta-RA 847 CG4912-RA 67..153 17..103 435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10233755..10234356 183..784 3010 100 Plus
2L 23513712 2L 10232573..10232663 17..107 455 100 Plus
2L 23513712 2L 10233478..10233561 101..184 420 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:23:44 has no hits.

BO04033.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:44 Download gff for BO04033.complete
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 1..771 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:43 Download gff for BO04033.complete
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 63..834 17..789 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:21 Download gff for BO04033.complete
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 67..834 17..786 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:45 Download gff for BO04033.complete
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 63..834 17..789 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:41 Download gff for BO04033.complete
Subject Subject Range Query Range Percent Splice Strand
eEF1delta-RB 67..834 17..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:41 Download gff for BO04033.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10232573..10232659 17..103 100 -> Plus
2L 10233481..10233561 104..184 100 -> Plus
2L 10233757..10234356 185..786 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:21 Download gff for BO04033.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10232573..10232659 17..103 100 -> Plus
arm_2L 10233481..10233561 104..184 100 -> Plus
arm_2L 10233757..10234356 185..786 99   Plus

BO04033.pep Sequence

Translation from 16 to 802

> BO04033.pep
MKVEALDKFWADKSRYDLAEKRFYEGPQKVTDRSHYSPLVSEIAKAREHI
QNSLEKIDGVTLDDGLNSELAKRLAQLEGEHKELKTQVSLLNELLTATVK
RLETQLKLTNGVSKEPEVEAKKPEANDDDDDVDLFGSDSEEEDGEAARIR
EERLAAYAAKKAKKVQIIAKSNIILDVKPWDDETDLKVMETEIRKITQDG
LLWGASKFVPVAFGIQKLSISCVVEDDKVSIDWLTEEIEKLEDFVQSVDI
AAFNKIASFLDH

BO04033.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
eEF1delta-PB 256 CG4912-PB 1..256 1..256 1287 100 Plus
eEF1delta-PA 229 CG4912-PA 1..229 1..256 1114 89.5 Plus
Ef1beta-PC 222 CG6341-PC 82..222 115..256 506 70.4 Plus
Ef1beta-PB 222 CG6341-PB 82..222 115..256 506 70.4 Plus