Clone Sequence Records
BO04035.3prime Sequence
581 bp (580 high quality bases) assembled on 2005-12-01
> BO04035.3prime
ATGGTCTAGAAAGCTTGCATAACCATCGATGAGCTTGGCTATGTTTTTGT
CTCTAATAAACTGGCATTTCTGTTCGAATTGCTGTAACGATTCTTCCATC
CTAAAGAACTCCGAATTAATCATTTTATTGTTTTTACGGATCTGATTCAG
GAATATATCCATGGGCGAAGTGTCTTCCTCTGAGTGTACTTCCTGATTTT
GCTGCACGATAGCTGGGGTTCCACTTGAAATGGTGGATAGATTGGAACGT
CCGATTTTCTCGCCACTTTCTACGAACTCAGCGATGGCGTTGCGGAATTT
CTCGGGTATCAGAAATAGTCGATCAACATTTCCCTTTTTGTAACACAGAT
AGGCGCTCTTCATTTGAAACCATTTTCTGCGTATTTGGGTGGGCGACTTG
TTTGGAAAACCCCTTTTTTTCATCTGATTGGCGATTTGGATGAAGGTGTA
CTGGGTGGTGCTGGTGGACAGGGCTCCCTGGCAGTTGTTCACCTCCTTAA
TCAGGTCGAGCATGCACTCTATTTCGGCGGAGACCCAAAAGTTTCGTTTC
AGTTTCTCGGACTTCATGTCGACTGATAACT
BO04035.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-PA | 552 | CG5727-RA | 1..549 | 567..19 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-RA | 772 | CG5727-RA | 78..627 | 568..19 | 2750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10210225..10210604 | 189..568 | 1900 | 100 | Plus |
| 2L | 23513712 | 2L | 10209998..10210169 | 19..190 | 860 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:39:52 has no hits.
BO04035.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:01 Download gff for
BO04035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-PA | 1..552 | 18..567 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:20 Download gff for
BO04035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-PA | 1..552 | 18..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:39:32 Download gff for
BO04035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 74..631 | 13..574 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:11 Download gff for
BO04035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 74..631 | 13..574 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:11 Download gff for
BO04035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10209994..10210167 | 13..188 | 98 | <- | Plus |
| 2L | 10210225..10210608 | 189..574 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:39:32 Download gff for
BO04035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10209994..10210167 | 13..188 | 98 | <- | Plus |
| arm_2L | 10210225..10210608 | 189..574 | 99 | | Plus |
BO04035.5prime Sequence
581 bp (580 high quality bases) assembled on 2005-12-01
> BO04035.5prime
GAAGTTATCAGTCGACATGAAGTCCGAGAAACTGAAACGAAACTTTTGGG
TCTCCGCCGAAATAGAGTGCATGCTCGACCTGATTAAGGAGGTGAACAAC
TGCCAGGGAGCCCTGTCCACCAGCACCACCCAGTACACCTTCATCCAAAT
CGCCAATCAGATGAAAAAAAGGGGTTTTCCAAACAAGTCGCCCACCCAAA
TACGCAGAAAATGGTTTCAAATGAAGAGCGCCTATCTGTGTTACAAAAAG
GGAAATGTTGATCGACTATTTCTGATACCCGAGAAATTCCGCAACGCCAT
CGCTGAGTTCGTAGAAAGTGGCGAGAAAATCGGACGTTCCAATCTATCCA
CCATTTCAAGTGGAACCCCAGCTATCGTGCAGCAAAATCAGGAAGTACAC
TCAGAGGAAGACACTTCGCCCATGGATATATTCCTGAATCAGATCCGTAA
AAACAATAAAATGATTAATTCGGAGTTCTTTAGGATGGAAGAATCGTTAC
AGCAATTCGAACAGAAATGCCAGTTTATTAGAGACAAAAACATAGCCAAG
CTCATCGATGGTTATGCAAGCTTTCTAGACC
BO04035.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-PA | 552 | CG5727-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-RA | 772 | CG5727-RA | 78..627 | 16..565 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10210225..10210604 | 395..16 | 1900 | 100 | Minus |
| 2L | 23513712 | 2L | 10209998..10210169 | 565..394 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:58:31 has no hits.
BO04035.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:02 Download gff for
BO04035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-PA | 1..552 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:22 Download gff for
BO04035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-PA | 1..552 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:25 Download gff for
BO04035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 74..631 | 10..571 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:50 Download gff for
BO04035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 74..631 | 10..571 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:50 Download gff for
BO04035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10209994..10210167 | 396..571 | 98 | <- | Minus |
| 2L | 10210225..10210608 | 10..395 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:25 Download gff for
BO04035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10209994..10210167 | 396..571 | 98 | <- | Minus |
| arm_2L | 10210225..10210608 | 10..395 | 99 | | Minus |
BO04035.complete Sequence
583 bp (583 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629609
> BO04035.complete
GAAGTTATCAGTCGACATGAAGTCCGAGAAACTGAAACGAAACTTTTGGG
TCTCCGCCGAAATAGAGTGCATGCTCGACCTGATTAAGGAGGTGAACAAC
TGCCAGGGAGCCCTGTCCACCAGCACCACCCAGTACACCTTCATCCAAAT
CGCCAATCAGATGAAAAAAAGGGGTTTTCCAAACAAGTCGCCCACCCAAA
TACGCAGAAAATGGTTTCAAATGAAGAGCGCCTATCTGTGTTACAAAAAG
GGAAATGTTGATCGACTATTTCTGATACCCGAGAAATTCCGCAACGCCAT
CGCTGAGTTCGTAGAAAGTGGCGAGAAAATCGGACGTTCCAATCTATCCA
CCATTTCAAGTGGAACCCCAGCTATCGTGCAGCAAAATCAGGAAGTACAC
TCAGAGGAAGACACTTCGCCCATGGATATATTCCTGAATCAGATCCGTAA
AAACAATAAAATGATTAATTCGGAGTTCTTTAGGATGGAAGAATCGTTAC
AGCAATTCGAACAGAAATGCCAGTTTATTAGAGACAAAAACATAGCCAAG
CTCATCGATGGTTATGCAAGCTTTCTAGACCAT
BO04035.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-RA | 552 | CG5727-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-RA | 772 | CG5727-RA | 78..627 | 16..565 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10210225..10210604 | 395..16 | 1900 | 100 | Minus |
| 2L | 23513712 | 2L | 10209998..10210169 | 565..394 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:00:17 has no hits.
BO04035.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:47 Download gff for
BO04035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 1..552 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:45 Download gff for
BO04035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 62..619 | 10..571 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:06 Download gff for
BO04035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 79..627 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:47 Download gff for
BO04035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 62..619 | 10..571 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:51 Download gff for
BO04035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5727-RA | 79..627 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:51 Download gff for
BO04035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10209994..10210167 | 396..567 | 98 | <- | Minus |
| 2L | 10210225..10210603 | 17..395 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:06 Download gff for
BO04035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10209994..10210167 | 396..567 | 98 | <- | Minus |
| arm_2L | 10210225..10210603 | 17..395 | 100 | | Minus |
BO04035.pep Sequence
Translation from 16 to 583
> BO04035.pep
MKSEKLKRNFWVSAEIECMLDLIKEVNNCQGALSTSTTQYTFIQIANQMK
KRGFPNKSPTQIRRKWFQMKSAYLCYKKGNVDRLFLIPEKFRNAIAEFVE
SGEKIGRSNLSTISSGTPAIVQQNQEVHSEEDTSPMDIFLNQIRKNNKMI
NSEFFRMEESLQQFEQKCQFIRDKNIAKLIDGYASFLDH
BO04035.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5727-PA | 183 | CG5727-PA | 1..183 | 1..183 | 947 | 100 | Plus |
