Clone Sequence Records
BO04038.3prime Sequence
434 bp (433 high quality bases) assembled on 2005-12-01
> BO04038.3prime
ATGGTCTAGAAAGCTTGCTTGGTAAATTCCCAGAGATTTCTCCACCACAG
CGTGGGGCTGACGCATATGCTCGCTGTTCTCGGGCAAGTTCATGAAGTCC
TCGAAGCCAATGGAATCACAGCGGCCAGTCAGGACATCGTCCATGAAGTT
GCTGGACGAAAGGAAGGGCAGGCGGCCCACCTGACGTGCGGCGAAGCGCT
CCATGCCCATCTTGAGGGGCACGCCGAGGCCCTCGTGGTTGCGCAGCATC
TGCATGTTGCGGTTGTACTGGTGCTCGTTGTAGTTCAGCTCCGAGTCGCG
CAGCCGGTGGACGTGGGCCAGTTGGTTCAGGCAGTTGGCCTCGGTGGGCA
TTCCCACACGGCCGGTGGCGTTCAGCACGGACACCTCGGCGGGCTGGACT
TTCAGTGATGGCTGATACATGTCGACTGATAACT
BO04038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9324-PA | 405 | Pomp-RA | 1..402 | 420..19 | 2010 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pomp-RA | 1092 | CG9324-RA | 128..529 | 420..19 | 2010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20787849..20788115 | 418..152 | 1335 | 100 | Minus |
2L | 23513712 | 2L | 20788400..20788535 | 154..19 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:04:04 has no hits.
BO04038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:05 Download gff for
BO04038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-PA | 1..405 | 15..420 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:27 Download gff for
BO04038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9324-PA | 1..405 | 15..420 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:39:42 Download gff for
BO04038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 128..538 | 8..420 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:36:17 Download gff for
BO04038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 128..538 | 8..420 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:36:17 Download gff for
BO04038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20787842..20788115 | 152..428 | 98 | -> | Minus |
2L | 20788403..20788544 | 8..151 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:39:42 Download gff for
BO04038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20787842..20788115 | 152..428 | 98 | -> | Minus |
arm_2L | 20788403..20788544 | 8..151 | 96 | | Minus |
BO04038.5prime Sequence
434 bp (433 high quality bases) assembled on 2005-12-01
> BO04038.5prime
GAAGTTATCAGTCGACATGTATCAGCCATCACTGAAAGTCCAGCCCGCCG
AGGTGTCCGTGCTGAACGCCACCGGCCGTGTGGGAATGCCCACCGAGGCC
AACTGCCTGAACCAACTGGCCCACGTCCACCGGCTGCGCGACTCGGAGCT
GAACTACAACGAGCACCAGTACAACCGCAACATGCAGATGCTGCGCAACC
ACGAGGGCCTCGGCGTGCCCCTCAAGATGGGCATGGAGCGCTTCGCCGCA
CGTCAGGTGGGCCGCCTGCCCTTCCTTTCGTCCAGCAACTTCATGGACGA
TGTCCTGACTGGCCGCTGTGATTCCATTGGCTTCGAGGACTTCATGAACT
TGCCCGAGAACAGCGAGCATATGCGTCAGCCCCACGCTGTGGTGGAGAAA
TCTCTGGGAATTTACCAAGCAAGCTTTCTAGACC
BO04038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9324-PA | 405 | Pomp-RA | 1..402 | 17..418 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:57:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pomp-RA | 1092 | CG9324-RA | 128..529 | 17..418 | 2010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20787849..20788115 | 19..285 | 1335 | 100 | Plus |
2L | 23513712 | 2L | 20788400..20788535 | 283..418 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:57:56 has no hits.
BO04038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:06 Download gff for
BO04038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-PA | 1..405 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:29 Download gff for
BO04038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9324-PA | 1..405 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:34:52 Download gff for
BO04038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 128..538 | 17..429 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:01 Download gff for
BO04038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 128..538 | 17..429 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:01 Download gff for
BO04038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20787842..20788115 | 9..285 | 98 | -> | Plus |
2L | 20788403..20788544 | 286..429 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:34:52 Download gff for
BO04038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20787842..20788115 | 9..285 | 98 | -> | Plus |
arm_2L | 20788403..20788544 | 286..429 | 96 | | Plus |
BO04038.complete Sequence
436 bp (436 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629611
> BO04038.complete
GAAGTTATCAGTCGACATGTATCAGCCATCACTGAAAGTCCAGCCCGCCG
AGGTGTCCGTGCTGAACGCCACCGGCCGTGTGGGAATGCCCACCGAGGCC
AACTGCCTGAACCAACTGGCCCACGTCCACCGGCTGCGCGACTCGGAGCT
GAACTACAACGAGCACCAGTACAACCGCAACATGCAGATGCTGCGCAACC
ACGAGGGCCTCGGCGTGCCCCTCAAGATGGGCATGGAGCGCTTCGCCGCA
CGTCAGGTGGGCCGCCTGCCCTTCCTTTCGTCCAGCAACTTCATGGACGA
TGTCCTGACTGGCCGCTGTGATTCCATTGGCTTCGAGGACTTCATGAACT
TGCCCGAGAACAGCGAGCATATGCGTCAGCCCCACGCTGTGGTGGAGAAA
TCTCTGGGAATTTACCAAGCAAGCTTTCTAGACCAT
BO04038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pomp-RA | 405 | CG9324-PA | 1..402 | 17..418 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pomp-RA | 1092 | CG9324-RA | 128..529 | 17..418 | 2010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20787849..20788115 | 19..285 | 1335 | 100 | Plus |
2L | 23513712 | 2L | 20788400..20788535 | 283..418 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:52:15 has no hits.
BO04038.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:17 Download gff for
BO04038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 1..405 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:32 Download gff for
BO04038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 135..545 | 17..429 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:04 Download gff for
BO04038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 128..529 | 17..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:55:17 Download gff for
BO04038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 135..545 | 17..429 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:52 Download gff for
BO04038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pomp-RA | 128..529 | 17..420 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:52 Download gff for
BO04038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20787848..20788115 | 17..285 | 99 | -> | Plus |
2L | 20788403..20788535 | 286..420 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:04 Download gff for
BO04038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20787848..20788115 | 17..285 | 99 | -> | Plus |
arm_2L | 20788403..20788535 | 286..420 | 98 | | Plus |
BO04038.pep Sequence
Translation from 16 to 436
> BO04038.pep
MYQPSLKVQPAEVSVLNATGRVGMPTEANCLNQLAHVHRLRDSELNYNEH
QYNRNMQMLRNHEGLGVPLKMGMERFAARQVGRLPFLSSSNFMDDVLTGR
CDSIGFEDFMNLPENSEHMRQPHAVVEKSLGIYQASFLDH
BO04038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pomp-PA | 134 | CG9324-PA | 1..134 | 1..134 | 706 | 100 | Plus |