Clone BO04038 Report

Search the DGRC for BO04038

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptPomp-RA
Protein status:BO04038.pep: validated full length
Sequenced Size:436

Clone Sequence Records

BO04038.3prime Sequence

434 bp (433 high quality bases) assembled on 2005-12-01

> BO04038.3prime
ATGGTCTAGAAAGCTTGCTTGGTAAATTCCCAGAGATTTCTCCACCACAG
CGTGGGGCTGACGCATATGCTCGCTGTTCTCGGGCAAGTTCATGAAGTCC
TCGAAGCCAATGGAATCACAGCGGCCAGTCAGGACATCGTCCATGAAGTT
GCTGGACGAAAGGAAGGGCAGGCGGCCCACCTGACGTGCGGCGAAGCGCT
CCATGCCCATCTTGAGGGGCACGCCGAGGCCCTCGTGGTTGCGCAGCATC
TGCATGTTGCGGTTGTACTGGTGCTCGTTGTAGTTCAGCTCCGAGTCGCG
CAGCCGGTGGACGTGGGCCAGTTGGTTCAGGCAGTTGGCCTCGGTGGGCA
TTCCCACACGGCCGGTGGCGTTCAGCACGGACACCTCGGCGGGCTGGACT
TTCAGTGATGGCTGATACATGTCGACTGATAACT

BO04038.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9324-PA 405 Pomp-RA 1..402 420..19 2010 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
Pomp-RA 1092 CG9324-RA 128..529 420..19 2010 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20787849..20788115 418..152 1335 100 Minus
2L 23513712 2L 20788400..20788535 154..19 680 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:04:04 has no hits.

BO04038.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:05 Download gff for BO04038.3prime
Subject Subject Range Query Range Percent Splice Strand
Pomp-PA 1..405 15..420 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:27 Download gff for BO04038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9324-PA 1..405 15..420 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:39:42 Download gff for BO04038.3prime
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 128..538 8..420 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:36:17 Download gff for BO04038.3prime
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 128..538 8..420 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:36:17 Download gff for BO04038.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20787842..20788115 152..428 98 -> Minus
2L 20788403..20788544 8..151 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:39:42 Download gff for BO04038.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20787842..20788115 152..428 98 -> Minus
arm_2L 20788403..20788544 8..151 96   Minus

BO04038.5prime Sequence

434 bp (433 high quality bases) assembled on 2005-12-01

> BO04038.5prime
GAAGTTATCAGTCGACATGTATCAGCCATCACTGAAAGTCCAGCCCGCCG
AGGTGTCCGTGCTGAACGCCACCGGCCGTGTGGGAATGCCCACCGAGGCC
AACTGCCTGAACCAACTGGCCCACGTCCACCGGCTGCGCGACTCGGAGCT
GAACTACAACGAGCACCAGTACAACCGCAACATGCAGATGCTGCGCAACC
ACGAGGGCCTCGGCGTGCCCCTCAAGATGGGCATGGAGCGCTTCGCCGCA
CGTCAGGTGGGCCGCCTGCCCTTCCTTTCGTCCAGCAACTTCATGGACGA
TGTCCTGACTGGCCGCTGTGATTCCATTGGCTTCGAGGACTTCATGAACT
TGCCCGAGAACAGCGAGCATATGCGTCAGCCCCACGCTGTGGTGGAGAAA
TCTCTGGGAATTTACCAAGCAAGCTTTCTAGACC

BO04038.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9324-PA 405 Pomp-RA 1..402 17..418 2010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
Pomp-RA 1092 CG9324-RA 128..529 17..418 2010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20787849..20788115 19..285 1335 100 Plus
2L 23513712 2L 20788400..20788535 283..418 680 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:57:56 has no hits.

BO04038.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:06 Download gff for BO04038.5prime
Subject Subject Range Query Range Percent Splice Strand
Pomp-PA 1..405 17..422 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:29 Download gff for BO04038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9324-PA 1..405 17..422 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:34:52 Download gff for BO04038.5prime
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 128..538 17..429 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:01 Download gff for BO04038.5prime
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 128..538 17..429 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:01 Download gff for BO04038.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20787842..20788115 9..285 98 -> Plus
2L 20788403..20788544 286..429 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:34:52 Download gff for BO04038.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20787842..20788115 9..285 98 -> Plus
arm_2L 20788403..20788544 286..429 96   Plus

BO04038.complete Sequence

436 bp (436 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629611

> BO04038.complete
GAAGTTATCAGTCGACATGTATCAGCCATCACTGAAAGTCCAGCCCGCCG
AGGTGTCCGTGCTGAACGCCACCGGCCGTGTGGGAATGCCCACCGAGGCC
AACTGCCTGAACCAACTGGCCCACGTCCACCGGCTGCGCGACTCGGAGCT
GAACTACAACGAGCACCAGTACAACCGCAACATGCAGATGCTGCGCAACC
ACGAGGGCCTCGGCGTGCCCCTCAAGATGGGCATGGAGCGCTTCGCCGCA
CGTCAGGTGGGCCGCCTGCCCTTCCTTTCGTCCAGCAACTTCATGGACGA
TGTCCTGACTGGCCGCTGTGATTCCATTGGCTTCGAGGACTTCATGAACT
TGCCCGAGAACAGCGAGCATATGCGTCAGCCCCACGCTGTGGTGGAGAAA
TCTCTGGGAATTTACCAAGCAAGCTTTCTAGACCAT

BO04038.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
Pomp-RA 405 CG9324-PA 1..402 17..418 2010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
Pomp-RA 1092 CG9324-RA 128..529 17..418 2010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20787849..20788115 19..285 1335 100 Plus
2L 23513712 2L 20788400..20788535 283..418 680 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:52:15 has no hits.

BO04038.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:17 Download gff for BO04038.complete
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 1..405 17..422 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:32 Download gff for BO04038.complete
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 135..545 17..429 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:04 Download gff for BO04038.complete
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 128..529 17..420 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:55:17 Download gff for BO04038.complete
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 135..545 17..429 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:52 Download gff for BO04038.complete
Subject Subject Range Query Range Percent Splice Strand
Pomp-RA 128..529 17..420 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:52 Download gff for BO04038.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20787848..20788115 17..285 99 -> Plus
2L 20788403..20788535 286..420 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:04 Download gff for BO04038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20787848..20788115 17..285 99 -> Plus
arm_2L 20788403..20788535 286..420 98   Plus

BO04038.pep Sequence

Translation from 16 to 436

> BO04038.pep
MYQPSLKVQPAEVSVLNATGRVGMPTEANCLNQLAHVHRLRDSELNYNEH
QYNRNMQMLRNHEGLGVPLKMGMERFAARQVGRLPFLSSSNFMDDVLTGR
CDSIGFEDFMNLPENSEHMRQPHAVVEKSLGIYQASFLDH

BO04038.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
Pomp-PA 134 CG9324-PA 1..134 1..134 706 100 Plus