Clone Sequence Records
BO04040.5prime Sequence
554 bp (553 high quality bases) assembled on 2005-12-01
> BO04040.5prime
GAAGTTATCAGTCGACATGTCTTGGCTGGGAAGTATGATTCAAAAACTTG
GCAGAGCCACGCTCCTTGCTGTGGGCGGAAAACCCTTGGCTCCGATGGCA
TCAACCAGCTACACCGTGCGGCAGTTATCCCATGCCGAGCGACGAGCACG
CGGTCCCACTGTGCGGCGCTATGGATATGAGGACAAGATCTTCAAGAGCG
GACTACTCCCCCATGTGGACAATGGACAGAAACTGCCGATGCCGGTGTAT
CGCCCAAAGAACGCCTGGTCAAAGAAACGTGCGTTGTTTGGCCAGAACGA
CTACATCGACATCCTGGGCAACGATCGTCTGCATCCAGTCAAGGTGCTCT
ACTCCCTGCCATCCTGGCTGCGTGGCGTCTCCGGCAATGAGTACCAGGTG
CTTCTCCGCAAACGTAAGCTGCTCGAGAAGTCCAAGTATCCCATCGCCCG
ACCCACCAAGTGGCGGGAAATGGAGAAACGCATCCTCTACTTGTACAAGT
TCCTCAACCGCAAGACGAAGACGGGCTATTCACATCAGGCAAGCTTTCTA
GACC
BO04040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13098-PA | 525 | mRpL51-RA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL51-RA | 628 | CG13098-RA | 88..610 | 16..538 | 2615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8516771..8517293 | 538..16 | 2615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:49:16 has no hits.
BO04040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:09 Download gff for
BO04040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13098-PA | 1..525 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:34 Download gff for
BO04040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13098-PA | 1..525 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:48 Download gff for
BO04040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL51-RA | 82..613 | 9..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:25:12 Download gff for
BO04040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL51-RA | 82..613 | 9..542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:25:12 Download gff for
BO04040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8516767..8517299 | 9..542 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:48 Download gff for
BO04040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8516767..8517299 | 9..542 | 99 | | Minus |
BO04040.3prime Sequence
554 bp (553 high quality bases) assembled on 2005-12-01
> BO04040.3prime
ATGGTCTAGAAAGCTTGCCTGATGTGAATAGCCCGTCTTCGTCTTGCGGT
TGAGGAACTTGTACAAGTAGAGGATGCGTTTCTCCATTTCCCGCCACTTG
GTGGGTCGGGCGATGGGATACTTGGACTTCTCGAGCAGCTTACGTTTGCG
GAGAAGCACCTGGTACTCATTGCCGGAGACGCCACGCAGCCAGGATGGCA
GGGAGTAGAGCACCTTGACTGGATGCAGACGATCGTTGCCCAGGATGTCG
ATGTAGTCGTTCTGGCCAAACAACGCACGTTTCTTTGACCAGGCGTTCTT
TGGGCGATACACCGGCATCGGCAGTTTCTGTCCATTGTCCACATGGGGGA
GTAGTCCGCTCTTGAAGATCTTGTCCTCATATCCATAGCGCCGCACAGTG
GGACCGCGTGCTCGTCGCTCGGCATGGGATAACTGCCGCACGGTGTAGCT
GGTTGATGCCATCGGAGCCAAGGGTTTTCCGCCCACAGCAAGGAGCGTGG
CTCTGCCAAGTTTTTGAATCATACTTCCCAGCCAAGACATGTCGACTGAT
AACT
BO04040.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13098-PA | 525 | mRpL51-RA | 1..522 | 540..19 | 2610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL51-RA | 628 | CG13098-RA | 88..610 | 541..19 | 2615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8516771..8517293 | 19..541 | 2615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:38:55 has no hits.
BO04040.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:09 Download gff for
BO04040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13098-PA | 1..525 | 15..540 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:33 Download gff for
BO04040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13098-PA | 1..525 | 15..540 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:21 Download gff for
BO04040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL51-RA | 82..613 | 15..548 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:54 Download gff for
BO04040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL51-RA | 82..613 | 15..548 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:54 Download gff for
BO04040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8516767..8517299 | 15..548 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:21 Download gff for
BO04040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8516767..8517299 | 15..548 | 99 | | Plus |
BO04040.complete Sequence
556 bp (556 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629612
> BO04040.complete
GAAGTTATCAGTCGACATGTCTTGGCTGGGAAGTATGATTCAAAAACTTG
GCAGAGCCACGCTCCTTGCTGTGGGCGGAAAACCCTTGGCTCCGATGGCA
TCAACCAGCTACACCGTGCGGCAGTTATCCCATGCCGAGCGACGAGCACG
CGGTCCCACTGTGCGGCGCTATGGATATGAGGACAAGATCTTCAAGAGCG
GACTACTCCCCCATGTGGACAATGGACAGAAACTGCCGATGCCGGTGTAT
CGCCCAAAGAACGCCTGGTCAAAGAAACGTGCGTTGTTTGGCCAGAACGA
CTACATCGACATCCTGGGCAACGATCGTCTGCATCCAGTCAAGGTGCTCT
ACTCCCTGCCATCCTGGCTGCGTGGCGTCTCCGGCAATGAGTACCAGGTG
CTTCTCCGCAAACGTAAGCTGCTCGAGAAGTCCAAGTATCCCATCGCCCG
ACCCACCAAGTGGCGGGAAATGGAGAAACGCATCCTCTACTTGTACAAGT
TCCTCAACCGCAAGACGAAGACGGGCTATTCACATCAGGCAAGCTTTCTA
GACCAT
BO04040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL51-RA | 525 | CG13098-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL51-RA | 628 | CG13098-RA | 88..610 | 16..538 | 2615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8516771..8517293 | 538..16 | 2615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:11:40 has no hits.
BO04040.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:40 Download gff for
BO04040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL51-RA | 1..525 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:01:05 Download gff for
BO04040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL51-RA | 79..610 | 9..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:54 Download gff for
BO04040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL51-RA | 89..610 | 17..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:41 Download gff for
BO04040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL51-RA | 79..610 | 9..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:55 Download gff for
BO04040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL51-RA | 89..610 | 17..540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:55 Download gff for
BO04040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8516769..8517292 | 17..540 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:54 Download gff for
BO04040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8516769..8517292 | 17..540 | 99 | | Minus |
BO04040.pep Sequence
Translation from 16 to 556
> BO04040.pep
MSWLGSMIQKLGRATLLAVGGKPLAPMASTSYTVRQLSHAERRARGPTVR
RYGYEDKIFKSGLLPHVDNGQKLPMPVYRPKNAWSKKRALFGQNDYIDIL
GNDRLHPVKVLYSLPSWLRGVSGNEYQVLLRKRKLLEKSKYPIARPTKWR
EMEKRILYLYKFLNRKTKTGYSHQASFLDH
BO04040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL51-PA | 174 | CG13098-PA | 1..174 | 1..174 | 919 | 100 | Plus |
