Clone BO04042 Report

Search the DGRC for BO04042

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG3719-RA
Protein status:BO04042.pep: validated full length
Sequenced Size:514

Clone Sequence Records

BO04042.3prime Sequence

512 bp (511 high quality bases) assembled on 2005-12-01

> BO04042.3prime
ATGGTCTAGAAAGCTTGCCTGCTTCTGCTGTTGCTTCCGCTTCAGTTTGT
CGATTAGGGTCTCGATGCTGTTGGCGTCGACCAGACCAATGAACTTGTCC
ACTACGACGCCGTTCCTGAAGGCCAGAACAGCGGGCACGGCCTTCACCTC
GAAGGTCTCGACGAGATCCAGGTTCGTCTCCACATCGATGACCGCCAGGT
CGATCTCGTTCGAGTTCTCAAGCAGCTCGAGCATCTTGGGCGTGAGTATC
TTACAGGGGTCGCACCACTCGGCGTGGAAGTTCACGATCACCGGGTTGTC
GCTGTTGATCACCTTCTGATCGAACTCGTAGTGGTCTTTGATGACCAGCA
TTTTGTGGAGGTGCTGCGACTGCGACAGGTACTTCTGGGTGCCCCTGGCC
GCCTGGGGCGCCATTCTTTGGCCTCTGCTCTTCGCTCCAATGGAGCAACA
GGCCGCCGCCAGACGTGGCGCGATTCCCTCGGCGGCGATCTTCAGCATGT
CGACTGATAACT

BO04042.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3719-PA 483 CG3719-RA 1..480 498..19 2400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3719-RA 831 CG3719-RA 158..637 498..19 2400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1379079..1379374 19..314 1480 100 Plus
X 23542271 X 1380134..1380323 309..498 950 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:43:54 has no hits.

BO04042.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:12 Download gff for BO04042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3719-PA 1..483 18..498 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:38 Download gff for BO04042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3719-PA 1..483 18..498 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:27:59 Download gff for BO04042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3719-RA 151..637 19..508 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:35:29 Download gff for BO04042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3719-RA 151..637 19..508 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:35:29 Download gff for BO04042.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1379079..1379372 19..312 100 <- Plus
X 1380138..1380330 313..508 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:27:59 Download gff for BO04042.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1274171..1274363 313..508 97   Plus
arm_X 1273112..1273405 19..312 100 <- Plus

BO04042.5prime Sequence

512 bp (511 high quality bases) assembled on 2005-12-01

> BO04042.5prime
GAAGTTATCAGTCGACATGCTGAAGATCGCCGCCGAGGGAATCGCGCCAC
GTCTGGCGGCGGCCTGTTGCTCCATTGGAGCGAAGAGCAGAGGCCAAAGA
ATGGCGCCCCAGGCGGCCAGGGGCACCCAGAAGTACCTGTCGCAGTCGCA
GCACCTCCACAAAATGCTGGTCATCAAAGACCACTACGAGTTCGATCAGA
AGGTGATCAACAGCGACAACCCGGTGATCGTGAACTTCCACGCCGAGTGG
TGCGACCCCTGTAAGATACTCACGCCCAAGATGCTCGAGCTGCTTGAGAA
CTCGAACGAGATCGACCTGGCGGTCATCGATGTGGAGACGAACCTGGATC
TCGTCGAGACCTTCGAGGTGAAGGCCGTGCCCGCTGTTCTGGCCTTCAGG
AACGGCGTCGTAGTGGACAAGTTCATTGGTCTGGTCGACGCCAACAGCAT
CGAGACCCTAATCGACAAACTGAAGCGGAAGCAACAGCAGAAGCAGGCAA
GCTTTCTAGACC

BO04042.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3719-PA 483 CG3719-RA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3719-RA 831 CG3719-RA 158..637 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1379079..1379374 496..201 1480 100 Minus
X 23542271 X 1380134..1380323 206..17 950 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:58:33 has no hits.

BO04042.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:13 Download gff for BO04042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3719-PA 1..483 17..497 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:40 Download gff for BO04042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3719-PA 1..483 17..497 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:27 Download gff for BO04042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3719-RA 151..637 7..496 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:53 Download gff for BO04042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3719-RA 151..637 7..496 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:53 Download gff for BO04042.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1379079..1379372 203..496 100 <- Minus
X 1380138..1380330 7..202 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:27 Download gff for BO04042.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1273112..1273405 203..496 100 <- Minus
arm_X 1274171..1274363 7..202 97   Minus

BO04042.complete Sequence

514 bp (514 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629613

> BO04042.complete
GAAGTTATCAGTCGACATGCTGAAGATCGCCGCCGAGGGAATCGCGCCAC
GTCTGGCGGCGGCCTGTTGCTCCATTGGAGCGAAGAGCAGAGGCCAAAGA
ATGGCGCCCCAGGCGGCCAGGGGCACCCAGAAGTACCTGTCGCAGTCGCA
GCACCTCCACAAAATGCTGGTCATCAAAGACCACTACGAGTTCGATCAGA
AGGTGATCAACAGCGACAACCCGGTGATCGTGAACTTCCACGCCGAGTGG
TGCGACCCCTGTAAGATACTCACGCCCAAGATGCTCGAGCTGCTTGAGAA
CTCGAACGAGATCGACCTGGCGGTCATCGATGTGGAGACGAACCTGGATC
TCGTCGAGACCTTCGAGGTGAAGGCCGTGCCCGCTGTTCTGGCCTTCAGG
AACGGCGTCGTAGTGGACAAGTTCATTGGTCTGGTCGACGCCAACAGCAT
CGAGACCCTAATCGACAAACTGAAGCGGAAGCAACAGCAGAAGCAGGCAA
GCTTTCTAGACCAT

BO04042.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3719-RA 483 CG3719-PA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3719-RA 831 CG3719-RA 158..637 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1379079..1379374 496..201 1480 100 Minus
X 23542271 X 1380134..1380323 206..17 950 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:33:37 has no hits.

BO04042.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:08 Download gff for BO04042.complete
Subject Subject Range Query Range Percent Splice Strand
CG3719-RA 1..483 17..497 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:48 Download gff for BO04042.complete
Subject Subject Range Query Range Percent Splice Strand
CG3719-RA 147..633 7..496 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:03 Download gff for BO04042.complete
Subject Subject Range Query Range Percent Splice Strand
CG3719-RA 158..637 17..498 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:08 Download gff for BO04042.complete
Subject Subject Range Query Range Percent Splice Strand
CG3719-RA 147..633 7..496 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:01 Download gff for BO04042.complete
Subject Subject Range Query Range Percent Splice Strand
CG3719-RA 158..637 17..498 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:01 Download gff for BO04042.complete
Subject Subject Range Query Range Percent Splice Strand
X 1379077..1379372 203..498 99 <- Minus
X 1380138..1380323 17..202 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:03 Download gff for BO04042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1273110..1273405 203..498 99 <- Minus
arm_X 1274171..1274356 17..202 100   Minus

BO04042.pep Sequence

Translation from 16 to 514

> BO04042.pep
MLKIAAEGIAPRLAAACCSIGAKSRGQRMAPQAARGTQKYLSQSQHLHKM
LVIKDHYEFDQKVINSDNPVIVNFHAEWCDPCKILTPKMLELLENSNEID
LAVIDVETNLDLVETFEVKAVPAVLAFRNGVVVDKFIGLVDANSIETLID
KLKRKQQQKQASFLDH

BO04042.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3719-PA 160 CG3719-PA 1..160 1..160 814 100 Plus
CG8993-PA 142 CG8993-PA 17..134 34..149 208 36.4 Plus
CG8517-PA 145 CG8517-PA 34..133 53..151 195 35 Plus
TrxT-PB 157 CG3315-PB 5..104 53..151 150 28.7 Plus
TrxT-PA 157 CG3315-PA 5..104 53..151 150 28.7 Plus