Clone Sequence Records
BO04042.3prime Sequence
512 bp (511 high quality bases) assembled on 2005-12-01
> BO04042.3prime
ATGGTCTAGAAAGCTTGCCTGCTTCTGCTGTTGCTTCCGCTTCAGTTTGT
CGATTAGGGTCTCGATGCTGTTGGCGTCGACCAGACCAATGAACTTGTCC
ACTACGACGCCGTTCCTGAAGGCCAGAACAGCGGGCACGGCCTTCACCTC
GAAGGTCTCGACGAGATCCAGGTTCGTCTCCACATCGATGACCGCCAGGT
CGATCTCGTTCGAGTTCTCAAGCAGCTCGAGCATCTTGGGCGTGAGTATC
TTACAGGGGTCGCACCACTCGGCGTGGAAGTTCACGATCACCGGGTTGTC
GCTGTTGATCACCTTCTGATCGAACTCGTAGTGGTCTTTGATGACCAGCA
TTTTGTGGAGGTGCTGCGACTGCGACAGGTACTTCTGGGTGCCCCTGGCC
GCCTGGGGCGCCATTCTTTGGCCTCTGCTCTTCGCTCCAATGGAGCAACA
GGCCGCCGCCAGACGTGGCGCGATTCCCTCGGCGGCGATCTTCAGCATGT
CGACTGATAACT
BO04042.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3719-PA | 483 | CG3719-RA | 1..480 | 498..19 | 2400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3719-RA | 831 | CG3719-RA | 158..637 | 498..19 | 2400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1379079..1379374 | 19..314 | 1480 | 100 | Plus |
X | 23542271 | X | 1380134..1380323 | 309..498 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:43:54 has no hits.
BO04042.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:12 Download gff for
BO04042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3719-PA | 1..483 | 18..498 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:38 Download gff for
BO04042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3719-PA | 1..483 | 18..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:27:59 Download gff for
BO04042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3719-RA | 151..637 | 19..508 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:35:29 Download gff for
BO04042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3719-RA | 151..637 | 19..508 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:35:29 Download gff for
BO04042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1379079..1379372 | 19..312 | 100 | <- | Plus |
X | 1380138..1380330 | 313..508 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:27:59 Download gff for
BO04042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1274171..1274363 | 313..508 | 97 | | Plus |
arm_X | 1273112..1273405 | 19..312 | 100 | <- | Plus |
BO04042.5prime Sequence
512 bp (511 high quality bases) assembled on 2005-12-01
> BO04042.5prime
GAAGTTATCAGTCGACATGCTGAAGATCGCCGCCGAGGGAATCGCGCCAC
GTCTGGCGGCGGCCTGTTGCTCCATTGGAGCGAAGAGCAGAGGCCAAAGA
ATGGCGCCCCAGGCGGCCAGGGGCACCCAGAAGTACCTGTCGCAGTCGCA
GCACCTCCACAAAATGCTGGTCATCAAAGACCACTACGAGTTCGATCAGA
AGGTGATCAACAGCGACAACCCGGTGATCGTGAACTTCCACGCCGAGTGG
TGCGACCCCTGTAAGATACTCACGCCCAAGATGCTCGAGCTGCTTGAGAA
CTCGAACGAGATCGACCTGGCGGTCATCGATGTGGAGACGAACCTGGATC
TCGTCGAGACCTTCGAGGTGAAGGCCGTGCCCGCTGTTCTGGCCTTCAGG
AACGGCGTCGTAGTGGACAAGTTCATTGGTCTGGTCGACGCCAACAGCAT
CGAGACCCTAATCGACAAACTGAAGCGGAAGCAACAGCAGAAGCAGGCAA
GCTTTCTAGACC
BO04042.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3719-PA | 483 | CG3719-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3719-RA | 831 | CG3719-RA | 158..637 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1379079..1379374 | 496..201 | 1480 | 100 | Minus |
X | 23542271 | X | 1380134..1380323 | 206..17 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:58:33 has no hits.
BO04042.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:13 Download gff for
BO04042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3719-PA | 1..483 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:40 Download gff for
BO04042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3719-PA | 1..483 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:27 Download gff for
BO04042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3719-RA | 151..637 | 7..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:53 Download gff for
BO04042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3719-RA | 151..637 | 7..496 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:53 Download gff for
BO04042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1379079..1379372 | 203..496 | 100 | <- | Minus |
X | 1380138..1380330 | 7..202 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:27 Download gff for
BO04042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1273112..1273405 | 203..496 | 100 | <- | Minus |
arm_X | 1274171..1274363 | 7..202 | 97 | | Minus |
BO04042.complete Sequence
514 bp (514 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629613
> BO04042.complete
GAAGTTATCAGTCGACATGCTGAAGATCGCCGCCGAGGGAATCGCGCCAC
GTCTGGCGGCGGCCTGTTGCTCCATTGGAGCGAAGAGCAGAGGCCAAAGA
ATGGCGCCCCAGGCGGCCAGGGGCACCCAGAAGTACCTGTCGCAGTCGCA
GCACCTCCACAAAATGCTGGTCATCAAAGACCACTACGAGTTCGATCAGA
AGGTGATCAACAGCGACAACCCGGTGATCGTGAACTTCCACGCCGAGTGG
TGCGACCCCTGTAAGATACTCACGCCCAAGATGCTCGAGCTGCTTGAGAA
CTCGAACGAGATCGACCTGGCGGTCATCGATGTGGAGACGAACCTGGATC
TCGTCGAGACCTTCGAGGTGAAGGCCGTGCCCGCTGTTCTGGCCTTCAGG
AACGGCGTCGTAGTGGACAAGTTCATTGGTCTGGTCGACGCCAACAGCAT
CGAGACCCTAATCGACAAACTGAAGCGGAAGCAACAGCAGAAGCAGGCAA
GCTTTCTAGACCAT
BO04042.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3719-RA | 483 | CG3719-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3719-RA | 831 | CG3719-RA | 158..637 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1379079..1379374 | 496..201 | 1480 | 100 | Minus |
X | 23542271 | X | 1380134..1380323 | 206..17 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:33:37 has no hits.
BO04042.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:08 Download gff for
BO04042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3719-RA | 1..483 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:48 Download gff for
BO04042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3719-RA | 147..633 | 7..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:03 Download gff for
BO04042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3719-RA | 158..637 | 17..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:08 Download gff for
BO04042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3719-RA | 147..633 | 7..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:01 Download gff for
BO04042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3719-RA | 158..637 | 17..498 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:01 Download gff for
BO04042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1379077..1379372 | 203..498 | 99 | <- | Minus |
X | 1380138..1380323 | 17..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:03 Download gff for
BO04042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1273110..1273405 | 203..498 | 99 | <- | Minus |
arm_X | 1274171..1274356 | 17..202 | 100 | | Minus |
BO04042.pep Sequence
Translation from 16 to 514
> BO04042.pep
MLKIAAEGIAPRLAAACCSIGAKSRGQRMAPQAARGTQKYLSQSQHLHKM
LVIKDHYEFDQKVINSDNPVIVNFHAEWCDPCKILTPKMLELLENSNEID
LAVIDVETNLDLVETFEVKAVPAVLAFRNGVVVDKFIGLVDANSIETLID
KLKRKQQQKQASFLDH
BO04042.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3719-PA | 160 | CG3719-PA | 1..160 | 1..160 | 814 | 100 | Plus |
CG8993-PA | 142 | CG8993-PA | 17..134 | 34..149 | 208 | 36.4 | Plus |
CG8517-PA | 145 | CG8517-PA | 34..133 | 53..151 | 195 | 35 | Plus |
TrxT-PB | 157 | CG3315-PB | 5..104 | 53..151 | 150 | 28.7 | Plus |
TrxT-PA | 157 | CG3315-PA | 5..104 | 53..151 | 150 | 28.7 | Plus |