Clone BO04043 Report

Search the DGRC for BO04043

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG1572-RA
Protein status:BO04043.pep: validated full length
Sequenced Size:514

Clone Sequence Records

BO04043.3prime Sequence

512 bp (511 high quality bases) assembled on 2005-12-01

> BO04043.3prime
ATGGTCTAGAAAGCTTGCAATGCCGCGATAGGATCGGTGGGCCAGGAAGG
CGCTGATGAAGTACAGCACCGCATTGACCAGGCCCAAAACACCGGCTGCC
ATATAGGCGTCGTGCTTTACATCGCGCAGCTTGAGCAGCAGGATGGTGGA
CGAGACCAGGATCAGGATGGCGGCCACACTGTGGTAAATCAGCTCATAGA
TCGTCTTGGCAATAATGCCGCCCGTGCTGAGCGACGTGAGGCAGGCGAGG
AGTAAACAGAACGTTCCTATCATAAAGGTAACGGCCATCAGATAATGGAA
CAGATCCTGCTGGCCATAGAAGTATCTGTGGTAGTCCTGGTAGTTGAACG
CCAGAATTCCCACAATGGAAGCACCAATGATCAGCTCGAAGAGCTTGAGG
ATGCCGGGGAAAGTCTTCAGATAGCCCGTGTTCAGGACAATGTAGGAGGT
GTTGGTGGTGCTGGTGGTGGTGCGGGTAATGGTCACTGAATGCGACATGT
CGACTGATAACT

BO04043.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1572-PA 483 CG1572-RA 1..480 498..19 2400 100 Minus
CG1572-PB 483 CG1572-RB 1..480 498..19 2400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1572-RD 889 CG1572-RD 76..555 498..19 2400 100 Minus
CG1572-RC 1245 CG1572-RC 197..676 498..19 2400 100 Minus
CG1572-RB 974 CG1572-RB 161..640 498..19 2400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11555925..11556112 195..382 940 100 Plus
X 23542271 X 11555619..11555795 19..195 885 100 Plus
X 23542271 X 11556184..11556300 382..498 585 100 Plus
Blast to na_te.dros performed 2015-02-09 18:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1B 2038 Dnet\R1B NETR1B 2038bp 72..126 184..130 104 65.5 Minus

BO04043.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:13 Download gff for BO04043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1572-PB 1..483 15..498 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:41 Download gff for BO04043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1572-PB 1..483 15..498 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:57:49 Download gff for BO04043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 154..649 7..505 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:01 Download gff for BO04043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 154..649 7..505 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:01 Download gff for BO04043.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11555610..11555795 7..195 97 <- Plus
X 11555926..11556111 196..381 100 <- Plus
X 11556184..11556307 382..505 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:57:49 Download gff for BO04043.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11450217..11450340 382..505 97   Plus
arm_X 11449643..11449828 7..195 97 <- Plus
arm_X 11449959..11450144 196..381 100 <- Plus

BO04043.5prime Sequence

512 bp (511 high quality bases) assembled on 2005-12-01

> BO04043.5prime
GAAGTTATCAGTCGACATGTCGCATTCAGTGACCATTACCCGCACCACCA
CCAGCACCACCAACACCTCCTACATTGTCCTGAACACGGGCTATCTGAAG
ACTTTCCCCGGCATCCTCAAGCTCTTCGAGCTGATCATTGGTGCTTCCAT
TGTGGGAATTCTGGCGTTCAACTACCAGGACTACCACAGATACTTCTATG
GCCAGCAGGATCTGTTCCATTATCTGATGGCCGTTACCTTTATGATAGGA
ACGTTCTGTTTACTCCTCGCCTGCCTCACGTCGCTCAGCACGGGCGGCAT
TATTGCCAAGACGATCTATGAGCTGATTTACCACAGTGTGGCCGCCATCC
TGATCCTGGTCTCGTCCACCATCCTGCTGCTCAAGCTGCGCGATGTAAAG
CACGACGCCTATATGGCAGCCGGTGTTTTGGGCCTGGTCAATGCGGTGCT
GTACTTCATCAGCGCCTTCCTGGCCCACCGATCCTATCGCGGCATTGCAA
GCTTTCTAGACC

BO04043.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1572-PA 483 CG1572-RA 1..480 17..496 2400 100 Plus
CG1572-PB 483 CG1572-RB 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1572-RD 889 CG1572-RD 76..555 17..496 2400 100 Plus
CG1572-RC 1245 CG1572-RC 197..676 17..496 2400 100 Plus
CG1572-RB 974 CG1572-RB 161..640 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11555925..11556112 320..133 940 100 Minus
X 23542271 X 11555619..11555795 496..320 885 100 Minus
X 23542271 X 11556184..11556300 133..17 585 100 Minus
Blast to na_te.dros performed 2015-02-12 01:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1B 2038 Dnet\R1B NETR1B 2038bp 72..126 331..385 104 65.5 Plus

BO04043.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:14 Download gff for BO04043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1572-PB 1..483 17..500 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:43 Download gff for BO04043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1572-PB 1..483 17..500 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:36:43 Download gff for BO04043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 154..649 10..508 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:29 Download gff for BO04043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 154..649 10..508 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:29 Download gff for BO04043.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11555610..11555795 320..508 97 <- Minus
X 11555926..11556111 134..319 100 <- Minus
X 11556184..11556307 10..133 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:36:43 Download gff for BO04043.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11449643..11449828 320..508 97 <- Minus
arm_X 11449959..11450144 134..319 100 <- Minus
arm_X 11450217..11450340 10..133 97   Minus

BO04043.complete Sequence

514 bp (514 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629614

> BO04043.complete
GAAGTTATCAGTCGACATGTCGCATTCAGTGACCATTACCCGCACCACCA
CCAGCACCACCAACACCTCCTACATTGTCCTGAACACGGGCTATCTGAAG
ACTTTCCCCGGCATCCTCAAGCTCTTCGAGCTGATCATTGGTGCTTCCAT
TGTGGGAATTCTGGCGTTCAACTACCAGGACTACCACAGATACTTCTATG
GCCAGCAGGATCTGTTCCATTATCTGATGGCCGTTACCTTTATGATAGGA
ACGTTCTGTTTACTCCTCGCCTGCCTCACGTCGCTCAGCACGGGCGGCAT
TATTGCCAAGACGATCTATGAGCTGATTTACCACAGTGTGGCCGCCATCC
TGATCCTGGTCTCGTCCACCATCCTGCTGCTCAAGCTGCGCGATGTAAAG
CACGACGCCTATATGGCAGCCGGTGTTTTGGGCCTGGTCAATGCGGTGCT
GTACTTCATCAGCGCCTTCCTGGCCCACCGATCCTATCGCGGCATTGCAA
GCTTTCTAGACCAT

BO04043.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1572-RD 483 CG1572-PD 1..480 17..496 2400 100 Plus
CG1572-RC 483 CG1572-PC 1..480 17..496 2400 100 Plus
CG1572-RB 483 CG1572-PB 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1572-RD 889 CG1572-RD 76..555 17..496 2400 100 Plus
CG1572-RC 1245 CG1572-RC 197..676 17..496 2400 100 Plus
CG1572-RB 974 CG1572-RB 161..640 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11555925..11556112 320..133 940 100 Minus
X 23542271 X 11555619..11555795 496..320 885 100 Minus
X 23542271 X 11556184..11556300 133..17 585 100 Minus
Blast to na_te.dros performed 2014-11-27 13:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1B 2038 Dnet\R1B NETR1B 2038bp 72..126 331..385 104 65.5 Plus

BO04043.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:22 Download gff for BO04043.complete
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 1..483 17..500 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:43 Download gff for BO04043.complete
Subject Subject Range Query Range Percent Splice Strand
CG1572-RA 137..632 10..508 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:34 Download gff for BO04043.complete
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 161..640 17..498 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:22 Download gff for BO04043.complete
Subject Subject Range Query Range Percent Splice Strand
CG1572-RA 137..632 10..508 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:09 Download gff for BO04043.complete
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 161..640 17..498 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:09 Download gff for BO04043.complete
Subject Subject Range Query Range Percent Splice Strand
X 11555617..11555795 320..498 98 <- Minus
X 11555926..11556111 134..319 100 <- Minus
X 11556184..11556300 17..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:34 Download gff for BO04043.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11449650..11449828 320..498 98 <- Minus
arm_X 11449959..11450144 134..319 100 <- Minus
arm_X 11450217..11450333 17..133 100   Minus

BO04043.pep Sequence

Translation from 16 to 514

> BO04043.pep
MSHSVTITRTTTSTTNTSYIVLNTGYLKTFPGILKLFELIIGASIVGILA
FNYQDYHRYFYGQQDLFHYLMAVTFMIGTFCLLLACLTSLSTGGIIAKTI
YELIYHSVAAILILVSSTILLLKLRDVKHDAYMAAGVLGLVNAVLYFISA
FLAHRSYRGIASFLDH

BO04043.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1572-PD 160 CG1572-PD 1..160 1..160 804 100 Plus
CG1572-PC 160 CG1572-PC 1..160 1..160 804 100 Plus
CG1572-PB 160 CG1572-PB 1..160 1..160 804 100 Plus
CG1572-PA 160 CG1572-PA 1..160 1..160 804 100 Plus