Clone Sequence Records
BO04043.3prime Sequence
512 bp (511 high quality bases) assembled on 2005-12-01
> BO04043.3prime
ATGGTCTAGAAAGCTTGCAATGCCGCGATAGGATCGGTGGGCCAGGAAGG
CGCTGATGAAGTACAGCACCGCATTGACCAGGCCCAAAACACCGGCTGCC
ATATAGGCGTCGTGCTTTACATCGCGCAGCTTGAGCAGCAGGATGGTGGA
CGAGACCAGGATCAGGATGGCGGCCACACTGTGGTAAATCAGCTCATAGA
TCGTCTTGGCAATAATGCCGCCCGTGCTGAGCGACGTGAGGCAGGCGAGG
AGTAAACAGAACGTTCCTATCATAAAGGTAACGGCCATCAGATAATGGAA
CAGATCCTGCTGGCCATAGAAGTATCTGTGGTAGTCCTGGTAGTTGAACG
CCAGAATTCCCACAATGGAAGCACCAATGATCAGCTCGAAGAGCTTGAGG
ATGCCGGGGAAAGTCTTCAGATAGCCCGTGTTCAGGACAATGTAGGAGGT
GTTGGTGGTGCTGGTGGTGGTGCGGGTAATGGTCACTGAATGCGACATGT
CGACTGATAACT
BO04043.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1572-PA | 483 | CG1572-RA | 1..480 | 498..19 | 2400 | 100 | Minus |
CG1572-PB | 483 | CG1572-RB | 1..480 | 498..19 | 2400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1572-RD | 889 | CG1572-RD | 76..555 | 498..19 | 2400 | 100 | Minus |
CG1572-RC | 1245 | CG1572-RC | 197..676 | 498..19 | 2400 | 100 | Minus |
CG1572-RB | 974 | CG1572-RB | 161..640 | 498..19 | 2400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11555925..11556112 | 195..382 | 940 | 100 | Plus |
X | 23542271 | X | 11555619..11555795 | 19..195 | 885 | 100 | Plus |
X | 23542271 | X | 11556184..11556300 | 382..498 | 585 | 100 | Plus |
Blast to na_te.dros performed 2015-02-09 18:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dnet\R1B | 2038 | Dnet\R1B NETR1B 2038bp | 72..126 | 184..130 | 104 | 65.5 | Minus |
BO04043.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:13 Download gff for
BO04043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1572-PB | 1..483 | 15..498 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:41 Download gff for
BO04043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1572-PB | 1..483 | 15..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:57:49 Download gff for
BO04043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1572-RB | 154..649 | 7..505 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:01 Download gff for
BO04043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1572-RB | 154..649 | 7..505 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:01 Download gff for
BO04043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11555610..11555795 | 7..195 | 97 | <- | Plus |
X | 11555926..11556111 | 196..381 | 100 | <- | Plus |
X | 11556184..11556307 | 382..505 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:57:49 Download gff for
BO04043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11450217..11450340 | 382..505 | 97 | | Plus |
arm_X | 11449643..11449828 | 7..195 | 97 | <- | Plus |
arm_X | 11449959..11450144 | 196..381 | 100 | <- | Plus |
BO04043.5prime Sequence
512 bp (511 high quality bases) assembled on 2005-12-01
> BO04043.5prime
GAAGTTATCAGTCGACATGTCGCATTCAGTGACCATTACCCGCACCACCA
CCAGCACCACCAACACCTCCTACATTGTCCTGAACACGGGCTATCTGAAG
ACTTTCCCCGGCATCCTCAAGCTCTTCGAGCTGATCATTGGTGCTTCCAT
TGTGGGAATTCTGGCGTTCAACTACCAGGACTACCACAGATACTTCTATG
GCCAGCAGGATCTGTTCCATTATCTGATGGCCGTTACCTTTATGATAGGA
ACGTTCTGTTTACTCCTCGCCTGCCTCACGTCGCTCAGCACGGGCGGCAT
TATTGCCAAGACGATCTATGAGCTGATTTACCACAGTGTGGCCGCCATCC
TGATCCTGGTCTCGTCCACCATCCTGCTGCTCAAGCTGCGCGATGTAAAG
CACGACGCCTATATGGCAGCCGGTGTTTTGGGCCTGGTCAATGCGGTGCT
GTACTTCATCAGCGCCTTCCTGGCCCACCGATCCTATCGCGGCATTGCAA
GCTTTCTAGACC
BO04043.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1572-PA | 483 | CG1572-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
CG1572-PB | 483 | CG1572-RB | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:01:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1572-RD | 889 | CG1572-RD | 76..555 | 17..496 | 2400 | 100 | Plus |
CG1572-RC | 1245 | CG1572-RC | 197..676 | 17..496 | 2400 | 100 | Plus |
CG1572-RB | 974 | CG1572-RB | 161..640 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11555925..11556112 | 320..133 | 940 | 100 | Minus |
X | 23542271 | X | 11555619..11555795 | 496..320 | 885 | 100 | Minus |
X | 23542271 | X | 11556184..11556300 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 01:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dnet\R1B | 2038 | Dnet\R1B NETR1B 2038bp | 72..126 | 331..385 | 104 | 65.5 | Plus |
BO04043.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:14 Download gff for
BO04043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1572-PB | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:43 Download gff for
BO04043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1572-PB | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:36:43 Download gff for
BO04043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1572-RB | 154..649 | 10..508 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:29 Download gff for
BO04043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1572-RB | 154..649 | 10..508 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:29 Download gff for
BO04043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11555610..11555795 | 320..508 | 97 | <- | Minus |
X | 11555926..11556111 | 134..319 | 100 | <- | Minus |
X | 11556184..11556307 | 10..133 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:36:43 Download gff for
BO04043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11449643..11449828 | 320..508 | 97 | <- | Minus |
arm_X | 11449959..11450144 | 134..319 | 100 | <- | Minus |
arm_X | 11450217..11450340 | 10..133 | 97 | | Minus |
BO04043.complete Sequence
514 bp (514 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629614
> BO04043.complete
GAAGTTATCAGTCGACATGTCGCATTCAGTGACCATTACCCGCACCACCA
CCAGCACCACCAACACCTCCTACATTGTCCTGAACACGGGCTATCTGAAG
ACTTTCCCCGGCATCCTCAAGCTCTTCGAGCTGATCATTGGTGCTTCCAT
TGTGGGAATTCTGGCGTTCAACTACCAGGACTACCACAGATACTTCTATG
GCCAGCAGGATCTGTTCCATTATCTGATGGCCGTTACCTTTATGATAGGA
ACGTTCTGTTTACTCCTCGCCTGCCTCACGTCGCTCAGCACGGGCGGCAT
TATTGCCAAGACGATCTATGAGCTGATTTACCACAGTGTGGCCGCCATCC
TGATCCTGGTCTCGTCCACCATCCTGCTGCTCAAGCTGCGCGATGTAAAG
CACGACGCCTATATGGCAGCCGGTGTTTTGGGCCTGGTCAATGCGGTGCT
GTACTTCATCAGCGCCTTCCTGGCCCACCGATCCTATCGCGGCATTGCAA
GCTTTCTAGACCAT
BO04043.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1572-RD | 483 | CG1572-PD | 1..480 | 17..496 | 2400 | 100 | Plus |
CG1572-RC | 483 | CG1572-PC | 1..480 | 17..496 | 2400 | 100 | Plus |
CG1572-RB | 483 | CG1572-PB | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1572-RD | 889 | CG1572-RD | 76..555 | 17..496 | 2400 | 100 | Plus |
CG1572-RC | 1245 | CG1572-RC | 197..676 | 17..496 | 2400 | 100 | Plus |
CG1572-RB | 974 | CG1572-RB | 161..640 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11555925..11556112 | 320..133 | 940 | 100 | Minus |
X | 23542271 | X | 11555619..11555795 | 496..320 | 885 | 100 | Minus |
X | 23542271 | X | 11556184..11556300 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dnet\R1B | 2038 | Dnet\R1B NETR1B 2038bp | 72..126 | 331..385 | 104 | 65.5 | Plus |
BO04043.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:22 Download gff for
BO04043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1572-RB | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:43 Download gff for
BO04043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1572-RA | 137..632 | 10..508 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:34 Download gff for
BO04043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1572-RB | 161..640 | 17..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:22 Download gff for
BO04043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1572-RA | 137..632 | 10..508 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:09 Download gff for
BO04043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1572-RB | 161..640 | 17..498 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:09 Download gff for
BO04043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11555617..11555795 | 320..498 | 98 | <- | Minus |
X | 11555926..11556111 | 134..319 | 100 | <- | Minus |
X | 11556184..11556300 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:34 Download gff for
BO04043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11449650..11449828 | 320..498 | 98 | <- | Minus |
arm_X | 11449959..11450144 | 134..319 | 100 | <- | Minus |
arm_X | 11450217..11450333 | 17..133 | 100 | | Minus |
BO04043.pep Sequence
Translation from 16 to 514
> BO04043.pep
MSHSVTITRTTTSTTNTSYIVLNTGYLKTFPGILKLFELIIGASIVGILA
FNYQDYHRYFYGQQDLFHYLMAVTFMIGTFCLLLACLTSLSTGGIIAKTI
YELIYHSVAAILILVSSTILLLKLRDVKHDAYMAAGVLGLVNAVLYFISA
FLAHRSYRGIASFLDH
BO04043.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1572-PD | 160 | CG1572-PD | 1..160 | 1..160 | 804 | 100 | Plus |
CG1572-PC | 160 | CG1572-PC | 1..160 | 1..160 | 804 | 100 | Plus |
CG1572-PB | 160 | CG1572-PB | 1..160 | 1..160 | 804 | 100 | Plus |
CG1572-PA | 160 | CG1572-PA | 1..160 | 1..160 | 804 | 100 | Plus |