Clone Sequence Records
BO04049.3prime Sequence
395 bp (394 high quality bases) assembled on 2005-12-01
> BO04049.3prime
ATGGTCTAGAAAGCTTGCGTTAATTTTGGCCATGCCGTAAACATTCTCAT
CGGAGTAGGCAATGTACAGGAAATAGTCCTCCTCGTGATGTTCCTGGTAC
AGGGAGCCCATGGTAGCCGATGTTGGTGGAATGACGTTGTTCACAAAGAA
GAAGAGGGCATCCTCGGGACGCAGGTGGATGCGCTTGCGAATGAGGAAGT
AGAACTGACCGACGGTCAGGTCGGAAGGCACCAGGTACTTCTTCTTGTCC
AAATCACCGATGCGCGCCTTGGGAGCCTTCTCGACGATGACGGGCACACG
GTCTGGATATTTGCGACGGATCTTGTCGCCCTCGGCGCGACGCTTCTCGA
AGGCGTGCTCCTCCTTGTATTGGAACTTCATGTCGACTGATAACT
BO04049.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32672-PA | 366 | Atg8a-RA | 1..363 | 381..19 | 1815 | 100 | Minus |
| CG12334-PA | 363 | Atg8b-RA | 58..104 | 330..284 | 160 | 93.6 | Minus |
| CG12334-PA | 363 | Atg8b-RA | 181..281 | 207..107 | 155 | 86.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:27:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg8a-RA | 1214 | CG32672-RA | 268..631 | 382..19 | 1820 | 100 | Minus |
| Atg8a-RC | 1183 | CG32672-RC | 328..600 | 291..19 | 1365 | 100 | Minus |
| Atg8a-RB | 1010 | CG32672-RB | 155..427 | 291..19 | 1365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10765604..10765802 | 93..291 | 995 | 100 | Plus |
| 3R | 32079331 | 3R | 17724567..17724904 | 44..381 | 775 | 82 | Plus |
| X | 23542271 | X | 10767979..10768071 | 290..382 | 465 | 100 | Plus |
| X | 23542271 | X | 10765461..10765537 | 19..95 | 385 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 05:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 5841..5904 | 383..321 | 110 | 69.7 | Minus |
BO04049.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:18 Download gff for
BO04049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-PA | 1..366 | 15..381 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:50 Download gff for
BO04049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32672-PA | 1..366 | 15..381 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:52:44 Download gff for
BO04049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 255..635 | 10..390 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:22 Download gff for
BO04049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 258..638 | 10..390 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:22 Download gff for
BO04049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10765454..10765535 | 10..93 | 96 | <- | Plus |
| X | 10765605..10765802 | 94..291 | 100 | <- | Plus |
| X | 10767981..10768081 | 292..390 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:52:44 Download gff for
BO04049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10662014..10662114 | 292..390 | 96 | | Plus |
| arm_X | 10659487..10659568 | 10..93 | 96 | <- | Plus |
| arm_X | 10659638..10659835 | 94..291 | 100 | <- | Plus |
BO04049.5prime Sequence
395 bp (395 high quality bases) assembled on 2006-02-03
> BO04049.5prime
GAAGTTATCAGTCGACATGAAGTTCCAATACAAGGAGGAGCACGCCTTCG
AGAAGCGTCGCGCCGAGGGCGACAAGATCCGTCGCAAATATCCAGACCGT
GTGCCCGTCATCGTCGAGAAGGCTCCCAAGGCGCGCATCGGTGATTTGGA
CAAGAAGAAGTACCTGGTGCCTTCCGACCTGACCGTCGGTCAGTTCTACT
TCCTCATTCGCAAGCGCATCCACCTGCGTCCCGAGGATGCCCTCTTCTTC
TTTGTGAACAACGTCATTCCACCAACATCGGCTACCATGGGCTCCCTGTA
CCAGGAACATCACGAGGAGGACTATTTCCTGTACATTGCCTACTCCGATG
AGAATGTTTACGGCATGGCCAAAATTAACGCAAGCTTTCTAGACC
BO04049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32672-PA | 366 | Atg8a-RA | 1..363 | 17..379 | 1815 | 100 | Plus |
| CG12334-PA | 363 | Atg8b-RA | 58..104 | 68..114 | 160 | 93.6 | Plus |
| CG12334-PA | 363 | Atg8b-RA | 181..281 | 191..291 | 155 | 86.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg8a-RA | 1214 | CG32672-RA | 268..631 | 16..379 | 1820 | 100 | Plus |
| Atg8a-RC | 1183 | CG32672-RC | 328..600 | 107..379 | 1365 | 100 | Plus |
| Atg8a-RB | 1010 | CG32672-RB | 155..427 | 107..379 | 1365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10765604..10765802 | 305..107 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 17724567..17724904 | 354..17 | 775 | 82 | Minus |
| X | 23542271 | X | 10767979..10768071 | 108..16 | 465 | 100 | Minus |
| X | 23542271 | X | 10765461..10765537 | 379..303 | 385 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 06:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 5841..5904 | 15..77 | 110 | 69.7 | Plus |
BO04049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:19 Download gff for
BO04049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-PA | 1..366 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:52 Download gff for
BO04049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32672-PA | 1..366 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:07 Download gff for
BO04049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 255..635 | 8..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:52:48 Download gff for
BO04049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 258..638 | 8..388 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:52:48 Download gff for
BO04049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10765454..10765535 | 305..388 | 96 | <- | Minus |
| X | 10765605..10765802 | 107..304 | 100 | <- | Minus |
| X | 10767981..10768081 | 8..106 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:07 Download gff for
BO04049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10659487..10659568 | 305..388 | 96 | <- | Minus |
| arm_X | 10659638..10659835 | 107..304 | 100 | <- | Minus |
| arm_X | 10662014..10662114 | 8..106 | 96 | | Minus |
BO04049.complete Sequence
397 bp (397 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629615
> BO04049.complete
GAAGTTATCAGTCGACATGAAGTTCCAATACAAGGAGGAGCACGCCTTCG
AGAAGCGTCGCGCCGAGGGCGACAAGATCCGTCGCAAATATCCAGACCGT
GTGCCCGTCATCGTCGAGAAGGCTCCCAAGGCGCGCATCGGTGATTTGGA
CAAGAAGAAGTACCTGGTGCCTTCCGACCTGACCGTCGGTCAGTTCTACT
TCCTCATTCGCAAGCGCATCCACCTGCGTCCCGAGGATGCCCTCTTCTTC
TTTGTGAACAACGTCATTCCACCAACATCGGCTACCATGGGCTCCCTGTA
CCAGGAACATCACGAGGAGGACTATTTCCTGTACATTGCCTACTCCGATG
AGAATGTTTACGGCATGGCCAAAATTAACGCAAGCTTTCTAGACCAT
BO04049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:18:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg8a-RA | 366 | CG32672-PA | 1..363 | 17..379 | 1815 | 100 | Plus |
| Atg8a-RC | 324 | CG32672-PC | 49..321 | 107..379 | 1365 | 100 | Plus |
| Atg8a-RB | 291 | CG32672-PB | 16..288 | 107..379 | 1365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg8a-RA | 1214 | CG32672-RA | 268..631 | 16..379 | 1820 | 100 | Plus |
| Atg8a-RC | 1183 | CG32672-RC | 328..600 | 107..379 | 1365 | 100 | Plus |
| Atg8a-RB | 1010 | CG32672-RB | 155..427 | 107..379 | 1365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10765604..10765802 | 305..107 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 17724567..17724904 | 354..17 | 775 | 82 | Minus |
| X | 23542271 | X | 10767979..10768071 | 108..16 | 465 | 100 | Minus |
| X | 23542271 | X | 10765461..10765537 | 379..303 | 385 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:18:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 5841..5904 | 15..77 | 110 | 69.7 | Plus |
BO04049.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:42 Download gff for
BO04049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 1..366 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:01:07 Download gff for
BO04049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 255..635 | 8..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:06 Download gff for
BO04049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 266..628 | 17..381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:42 Download gff for
BO04049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 255..635 | 8..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:32 Download gff for
BO04049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 269..631 | 17..381 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:32 Download gff for
BO04049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10765459..10765535 | 305..381 | 97 | <- | Minus |
| X | 10765605..10765802 | 107..304 | 100 | <- | Minus |
| X | 10767981..10768070 | 17..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:06 Download gff for
BO04049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10662014..10662103 | 17..106 | 100 | | Minus |
| arm_X | 10659492..10659568 | 305..381 | 97 | <- | Minus |
| arm_X | 10659638..10659835 | 107..304 | 100 | <- | Minus |
BO04049.pep Sequence
Translation from 16 to 397
> BO04049.pep
MKFQYKEEHAFEKRRAEGDKIRRKYPDRVPVIVEKAPKARIGDLDKKKYL
VPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHE
EDYFLYIAYSDENVYGMAKINASFLDH
BO04049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg8a-PA | 121 | CG32672-PA | 1..121 | 1..121 | 638 | 100 | Plus |
| Atg8b-PB | 120 | CG12334-PB | 3..118 | 1..116 | 530 | 82.8 | Plus |
| Atg8b-PA | 120 | CG12334-PA | 3..118 | 1..116 | 530 | 82.8 | Plus |
| Atg8a-PC | 107 | CG32672-PC | 7..107 | 21..121 | 482 | 92.1 | Plus |
| Atg8a-PB | 96 | CG32672-PB | 6..96 | 31..121 | 476 | 100 | Plus |
