Clone Sequence Records
BO04055.3prime Sequence
673 bp (547 high quality bases) assembled on 2005-12-01
> BO04055.3prime
ATGGTCTAGAAAGCTTGCGTTTTTGCAGACCAAGCTCATAATCTTGTCAA
TAACTTCATATCGCTCCTTTTCATACTTCTTGATATGCTTTATCCAGTGT
CCGCGCACTTTCTTCCAGCGGTTCATATTGGAGGACAGAAGATCGGAGGT
ACTGGCACCTTGGAGAGCCTTTTCCCGCTTCTTGTCCTCCTGGCTGAACT
CCAGACGAGGCGGAATTATGGGCAGATCCGTGGACTTGGCCTGCGGGAGC
TGGTTGATCACCTTTATCTCGCCGCTTTTAATTTGGGACAGGATTTCTTC
GCCGTTGTCCTCACGTTTGGTGGCCGTGAGTGAAGCATCTGTTTGAAATG
CACCCACAGCTGGATTCTTGGGTTGATTTGCCATCCATGCGCGGCATATG
GGGTACAAAGGAGTCTTATCCTGGTATTTGGACAGGTCCAAACTTCGCTC
AAACAGGCGCATTACGTAGGTCTCGCCGGGCGCCTTCTGGGCGACTGCCG
CTGCTCCAACGCTCTTCTTGTAGAGCACTCTCCTGGCCTTGATGCGTCCT
CCGGCGCCGGCTGCGGCTGCACTCGAGGATGTCGAAAGGCTCTCGCTAGA
GCCCGACGTGACCGTCTTGACTTTCGGATCTAGCTTTACCTGGTACTGAC
GCTGCTGNTGCTGCTGGATGAAC
BO04055.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15119-PA | 804 | mip40-RA | 234..801 | 586..19 | 2840 | 100 | Minus |
CG15119-PA | 804 | mip40-RA | 149..229 | 671..591 | 386 | 98.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mip40-RA | 1092 | CG15119-RA | 248..900 | 671..19 | 3209 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19291297..19291949 | 19..671 | 3209 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:58:30 has no hits.
BO04055.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:25 Download gff for
BO04055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip40-PA | 147..804 | 16..673 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:59 Download gff for
BO04055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15119-PA | 147..804 | 16..673 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:34:53 Download gff for
BO04055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip40-RA | 246..914 | 6..673 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:08 Download gff for
BO04055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip40-RA | 246..914 | 6..673 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:08 Download gff for
BO04055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19291283..19291951 | 6..673 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:34:53 Download gff for
BO04055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15178788..15179456 | 6..673 | 98 | | Plus |
BO04055.5prime Sequence
478 bp (417 high quality bases) assembled on 2005-12-01
> BO04055.5prime
GAAGTTATCAGTCGACATGAAGACTGTGCCGAAAAAGAAGGAAACGGCCC
TGCGCTTGCGGGAGTCGCGCCGTGAGGAGCAGAAACCAGAGACGACAAAC
CTGCCGCCGGACGACGACGCAGAGTCGGATTTGCCCATTCGGGGCCGTCC
CTCGAAGAAGCTGCTCATCCAGCAGCAACAGCAGCGTCAGTACCAGGTAA
AGCTAGATCCGAAAGTCAAGACGGTCACGTCGGGCTCTAGCGAGAAGCCT
TCGACATCCTCGAGTGCAGCCGCAGCCGGCGCCGGAGGACGCATCAAGGC
CAGGAGAGTGCTCTACAAGAAGAGCGTTGGAGCAGCGGCAGTCGCCCAGA
AGGCGCCCGGCGAGACCTACGTAATGCGCCTGTTTGAGCGAAGTTTGGAC
CTGTCCAAATACCAGGATAAGACTCCTTTGTACCCCATATGCCGCGCATG
GATGGCAAATCAACCCAAGAATCCAGCT
BO04055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15119-PA | 804 | mip40-RA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mip40-RA | 1092 | CG15119-RA | 100..561 | 17..478 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19291636..19292097 | 478..17 | 2310 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 01:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2397 | 159..209 | 120 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6861 | 170..296 | 106 | 58.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1090..1139 | 154..203 | 106 | 68 | Plus |
BO04055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:26 Download gff for
BO04055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip40-PA | 1..462 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:00 Download gff for
BO04055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15119-PA | 1..462 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:36:44 Download gff for
BO04055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip40-RA | 93..561 | 8..478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:52 Download gff for
BO04055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip40-RA | 93..561 | 8..478 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:52 Download gff for
BO04055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19291636..19292104 | 8..478 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:36:44 Download gff for
BO04055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15179141..15179609 | 8..478 | 99 | | Minus |
BO04055.complete Sequence
835 bp (835 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629617
> BO04055.complete
GAAGTTATCAGTCGACATGAAGACTGTGCCGAAAAAGAAGGAAACGGCCC
TGCGCTTGCGGGAGTCGCGCCGTGAGGAGCAGAAACCAGAGACGACAAAC
CTGCCGCCGGACGACGACGCAGAGTCGGATTTGCCCATTCGGGGCCGTCC
CTCGAAGAAGCTGCTCATCCAGCAGCAACAGCAGCGTCAGTACCAGGTAA
AGCTAGATCCGAAAGTCAAGACGGTCACGTCGGGCTCTAGCGAGAAGCCT
TCGACATCCTCGAGTGCAGCCGCAGCCGGCGCCGGAGGACGCATCAAGGC
CAGGAGAGTGCTCTACAAGAAGAGCGTTGGAGCAGCGGCAGTCGCCCAGA
AGGCGCCCGGCGAGACCTACGTAATGCGCCTGTTTGAGCGAAGTTTGGAC
CTGTCCAAATACCAGGATAAGACTCCTTTGTACCCCATATGCCGCGCATG
GATGGCAAATCAACCCAAGAATCCAGCTGTGGGTGCATTTCAAACAGATG
CTTCACTCACGGCCACCAAACGTGAGGACAACGGCGAAGAAATCCTGTCC
CAAATTAAAAGCGGCGAGATAAAGGTGATCAACCAGCTCCCGCAGGCCAA
GTCCACGGATCTGCCCATAATTCCGCCTCGTCTGGAGTTCAGCCAGGAGG
ACAAGAAGCGGGAAAAGGCTCTCCAAGGTGCCAGTACCTCCGATCTTCTG
TCCTCCAATATGAACCGCTGGAAGAAAGTGCGCGGACACTGGATAAAGCA
TATCAAGAAGTATGAAAAGGAGCGATATGAAGTTATTGACAAGATTATGA
GCTTGGTCTGCAAAAACGCAAGCTTTCTAGACCAT
BO04055.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mip40-RA | 804 | CG15119-PA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mip40-RA | 1092 | CG15119-RA | 100..900 | 17..817 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19291297..19292097 | 817..17 | 4005 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2397 | 159..209 | 120 | 70.6 | Plus |
BO04055.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:17 Download gff for
BO04055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip40-RA | 1..804 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:10 Download gff for
BO04055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip40-RA | 100..921 | 8..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:41 Download gff for
BO04055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip40-RA | 100..900 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:17 Download gff for
BO04055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip40-RA | 100..921 | 8..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:43 Download gff for
BO04055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip40-RA | 100..900 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:43 Download gff for
BO04055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19291294..19292097 | 17..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:41 Download gff for
BO04055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15178799..15179602 | 17..819 | 99 | | Minus |
BO04055.pep Sequence
Translation from 16 to 835
> BO04055.pep
MKTVPKKKETALRLRESRREEQKPETTNLPPDDDAESDLPIRGRPSKKLL
IQQQQQRQYQVKLDPKVKTVTSGSSEKPSTSSSAAAAGAGGRIKARRVLY
KKSVGAAAVAQKAPGETYVMRLFERSLDLSKYQDKTPLYPICRAWMANQP
KNPAVGAFQTDASLTATKREDNGEEILSQIKSGEIKVINQLPQAKSTDLP
IIPPRLEFSQEDKKREKALQGASTSDLLSSNMNRWKKVRGHWIKHIKKYE
KERYEVIDKIMSLVCKNASFLDH
BO04055.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mip40-PA | 267 | CG15119-PA | 1..267 | 1..267 | 1358 | 100 | Plus |