Clone BO04055 Report

Search the DGRC for BO04055

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:55
Vector:pDNR-Dual
Associated Gene/Transcriptmip40-RA
Protein status:BO04055.pep: validated full length
Sequenced Size:835

Clone Sequence Records

BO04055.3prime Sequence

673 bp (547 high quality bases) assembled on 2005-12-01

> BO04055.3prime
ATGGTCTAGAAAGCTTGCGTTTTTGCAGACCAAGCTCATAATCTTGTCAA
TAACTTCATATCGCTCCTTTTCATACTTCTTGATATGCTTTATCCAGTGT
CCGCGCACTTTCTTCCAGCGGTTCATATTGGAGGACAGAAGATCGGAGGT
ACTGGCACCTTGGAGAGCCTTTTCCCGCTTCTTGTCCTCCTGGCTGAACT
CCAGACGAGGCGGAATTATGGGCAGATCCGTGGACTTGGCCTGCGGGAGC
TGGTTGATCACCTTTATCTCGCCGCTTTTAATTTGGGACAGGATTTCTTC
GCCGTTGTCCTCACGTTTGGTGGCCGTGAGTGAAGCATCTGTTTGAAATG
CACCCACAGCTGGATTCTTGGGTTGATTTGCCATCCATGCGCGGCATATG
GGGTACAAAGGAGTCTTATCCTGGTATTTGGACAGGTCCAAACTTCGCTC
AAACAGGCGCATTACGTAGGTCTCGCCGGGCGCCTTCTGGGCGACTGCCG
CTGCTCCAACGCTCTTCTTGTAGAGCACTCTCCTGGCCTTGATGCGTCCT
CCGGCGCCGGCTGCGGCTGCACTCGAGGATGTCGAAAGGCTCTCGCTAGA
GCCCGACGTGACCGTCTTGACTTTCGGATCTAGCTTTACCTGGTACTGAC
GCTGCTGNTGCTGCTGGATGAAC

BO04055.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15119-PA 804 mip40-RA 234..801 586..19 2840 100 Minus
CG15119-PA 804 mip40-RA 149..229 671..591 386 98.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
mip40-RA 1092 CG15119-RA 248..900 671..19 3209 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19291297..19291949 19..671 3209 99.4 Plus
Blast to na_te.dros performed on 2015-02-11 22:58:30 has no hits.

BO04055.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:25 Download gff for BO04055.3prime
Subject Subject Range Query Range Percent Splice Strand
mip40-PA 147..804 16..673 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:59 Download gff for BO04055.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15119-PA 147..804 16..673 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:34:53 Download gff for BO04055.3prime
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 246..914 6..673 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:08 Download gff for BO04055.3prime
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 246..914 6..673 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:08 Download gff for BO04055.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19291283..19291951 6..673 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:34:53 Download gff for BO04055.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15178788..15179456 6..673 98   Plus

BO04055.5prime Sequence

478 bp (417 high quality bases) assembled on 2005-12-01

> BO04055.5prime
GAAGTTATCAGTCGACATGAAGACTGTGCCGAAAAAGAAGGAAACGGCCC
TGCGCTTGCGGGAGTCGCGCCGTGAGGAGCAGAAACCAGAGACGACAAAC
CTGCCGCCGGACGACGACGCAGAGTCGGATTTGCCCATTCGGGGCCGTCC
CTCGAAGAAGCTGCTCATCCAGCAGCAACAGCAGCGTCAGTACCAGGTAA
AGCTAGATCCGAAAGTCAAGACGGTCACGTCGGGCTCTAGCGAGAAGCCT
TCGACATCCTCGAGTGCAGCCGCAGCCGGCGCCGGAGGACGCATCAAGGC
CAGGAGAGTGCTCTACAAGAAGAGCGTTGGAGCAGCGGCAGTCGCCCAGA
AGGCGCCCGGCGAGACCTACGTAATGCGCCTGTTTGAGCGAAGTTTGGAC
CTGTCCAAATACCAGGATAAGACTCCTTTGTACCCCATATGCCGCGCATG
GATGGCAAATCAACCCAAGAATCCAGCT

BO04055.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15119-PA 804 mip40-RA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
mip40-RA 1092 CG15119-RA 100..561 17..478 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19291636..19292097 478..17 2310 100 Minus
Blast to na_te.dros performed 2015-02-12 01:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2397 159..209 120 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6861 170..296 106 58.9 Plus
roo 9092 roo DM_ROO 9092bp 1090..1139 154..203 106 68 Plus

BO04055.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:26 Download gff for BO04055.5prime
Subject Subject Range Query Range Percent Splice Strand
mip40-PA 1..462 17..478 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:00 Download gff for BO04055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15119-PA 1..462 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:36:44 Download gff for BO04055.5prime
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 93..561 8..478 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:52 Download gff for BO04055.5prime
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 93..561 8..478 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:52 Download gff for BO04055.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19291636..19292104 8..478 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:36:44 Download gff for BO04055.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15179141..15179609 8..478 99   Minus

BO04055.complete Sequence

835 bp (835 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629617

> BO04055.complete
GAAGTTATCAGTCGACATGAAGACTGTGCCGAAAAAGAAGGAAACGGCCC
TGCGCTTGCGGGAGTCGCGCCGTGAGGAGCAGAAACCAGAGACGACAAAC
CTGCCGCCGGACGACGACGCAGAGTCGGATTTGCCCATTCGGGGCCGTCC
CTCGAAGAAGCTGCTCATCCAGCAGCAACAGCAGCGTCAGTACCAGGTAA
AGCTAGATCCGAAAGTCAAGACGGTCACGTCGGGCTCTAGCGAGAAGCCT
TCGACATCCTCGAGTGCAGCCGCAGCCGGCGCCGGAGGACGCATCAAGGC
CAGGAGAGTGCTCTACAAGAAGAGCGTTGGAGCAGCGGCAGTCGCCCAGA
AGGCGCCCGGCGAGACCTACGTAATGCGCCTGTTTGAGCGAAGTTTGGAC
CTGTCCAAATACCAGGATAAGACTCCTTTGTACCCCATATGCCGCGCATG
GATGGCAAATCAACCCAAGAATCCAGCTGTGGGTGCATTTCAAACAGATG
CTTCACTCACGGCCACCAAACGTGAGGACAACGGCGAAGAAATCCTGTCC
CAAATTAAAAGCGGCGAGATAAAGGTGATCAACCAGCTCCCGCAGGCCAA
GTCCACGGATCTGCCCATAATTCCGCCTCGTCTGGAGTTCAGCCAGGAGG
ACAAGAAGCGGGAAAAGGCTCTCCAAGGTGCCAGTACCTCCGATCTTCTG
TCCTCCAATATGAACCGCTGGAAGAAAGTGCGCGGACACTGGATAAAGCA
TATCAAGAAGTATGAAAAGGAGCGATATGAAGTTATTGACAAGATTATGA
GCTTGGTCTGCAAAAACGCAAGCTTTCTAGACCAT

BO04055.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
mip40-RA 804 CG15119-PA 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
mip40-RA 1092 CG15119-RA 100..900 17..817 4005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19291297..19292097 817..17 4005 100 Minus
Blast to na_te.dros performed 2014-11-28 00:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2397 159..209 120 70.6 Plus

BO04055.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:17 Download gff for BO04055.complete
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 1..804 17..820 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:10 Download gff for BO04055.complete
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 100..921 8..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:41 Download gff for BO04055.complete
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 100..900 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:17 Download gff for BO04055.complete
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 100..921 8..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:43 Download gff for BO04055.complete
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 100..900 17..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:43 Download gff for BO04055.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19291294..19292097 17..819 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:41 Download gff for BO04055.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15178799..15179602 17..819 99   Minus

BO04055.pep Sequence

Translation from 16 to 835

> BO04055.pep
MKTVPKKKETALRLRESRREEQKPETTNLPPDDDAESDLPIRGRPSKKLL
IQQQQQRQYQVKLDPKVKTVTSGSSEKPSTSSSAAAAGAGGRIKARRVLY
KKSVGAAAVAQKAPGETYVMRLFERSLDLSKYQDKTPLYPICRAWMANQP
KNPAVGAFQTDASLTATKREDNGEEILSQIKSGEIKVINQLPQAKSTDLP
IIPPRLEFSQEDKKREKALQGASTSDLLSSNMNRWKKVRGHWIKHIKKYE
KERYEVIDKIMSLVCKNASFLDH

BO04055.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
mip40-PA 267 CG15119-PA 1..267 1..267 1358 100 Plus