Clone Sequence Records
BO04058.3prime Sequence
623 bp (622 high quality bases) assembled on 2005-12-01
> BO04058.3prime
ATGGTCTAGAAAGCTTGCAATAACTATATCATCGATTTGCTCGTCGTTCA
GGGCGCGCAGATTGCATTTGCATAGGTAGGCCAGAATGCGTTTCTCCGCC
TTAATTCGGTTTGCTTCGCCCAGTCCTTCAAGCAGGGCTTCTATCCTCTT
TTCTGCTTGAGCCACTGGCGTTGCATGGGCAGGATTTGTGGGTGGTGCTG
GTGCAGCTCCCGCAACGGCCAGCTGCTCATCCATGGCCTCCTGGAGCGGA
TCCTCATCATCGTTGACCTCGTCGCTGGATTTCAGTGTGCTCCTACTCAG
ATCACCCGAATTTCGGTGATTAATCGGATGGTGGTGATGCTGCAGGAATT
TCAAATGCGGCAGAAGACTCCAATCGGAGCCAGTGCCTCCGGCCTTTTCT
TTGGCCAGCTCCCGACGCTGTTTGGCCACCAGATGATTCCAACGACTGAC
ACAGGCACTAGCTTCTGAATTTAATGAAGTGGCGATGCTGCTCCAGATTT
CCGGATGTCGCTTCTTATGCGCTTCGTAGGGTGCGTTTCTAAGTTCGCGC
TCATAAAGCTTGGGATTAGCCCTAACCAGCTCAATAAGTCGCGTGTCGAA
CTGCGACATGTCGACTGATAACT
BO04058.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-PA | 594 | CG6683-RA | 1..591 | 609..19 | 2955 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-RA | 990 | CG6683-RA | 75..665 | 609..19 | 2955 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8514199..8514643 | 19..463 | 2225 | 100 | Plus |
| 3L | 28110227 | 3L | 8514700..8514847 | 462..609 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:27:55 has no hits.
BO04058.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:28 Download gff for
BO04058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-PA | 1..594 | 18..609 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:03 Download gff for
BO04058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-PA | 1..594 | 18..609 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:52:46 Download gff for
BO04058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 67..675 | 11..619 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:42 Download gff for
BO04058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 67..675 | 11..619 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:42 Download gff for
BO04058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8514189..8514641 | 11..461 | 99 | <- | Plus |
| 3L | 8514700..8514855 | 462..619 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:52:46 Download gff for
BO04058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8507289..8507741 | 11..461 | 99 | <- | Plus |
| arm_3L | 8507800..8507955 | 462..619 | 97 | | Plus |
BO04058.5prime Sequence
623 bp (622 high quality bases) assembled on 2005-11-29
> BO04058.5prime
GAAGTTATCAGTCGACATGTCGCAGTTCGACACGCGACTTATTGAGCTGG
TTAGGGCTAATCCCAAGCTTTATGAGCGCGAACTTAGAAACGCACCCTAC
GAAGCGCATAAGAAGCGACATCCGGAAATCTGGAGCAGCATCGCCACTTC
ATTAAATTCAGAAGCTAGTGCCTGTGTCAGTCGTTGGAATCATCTGGTGG
CCAAACAGCGTCGGGAGCTGGCCAAAGAAAAGGCCGGAGGCACTGGCTCC
GATTGGAGTCTTCTGCCGCATTTGAAATTCCTGCAGCATCACCACCATCC
GATTAATCACCGAAATTCGGGTGATCTGAGTAGGAGCACACTGAAATCCA
GCGACGAGGTCAACGATGATGAGGATCCGCTCCAGGAGGCCATGGATGAG
CAGCTGGCCGTTGCGGGAGCTGCACCAGCACCACCCACAAATCCTGCCCA
TGCAACGCCAGTGGCTCAAGCAGAAAAGAGGATAGAAGCCCTGCTTGAAG
GACTGGGCGAAGCAAACCGAATTAAGGCGGAGAAACGCATTCTGGCCTAC
CTATGCAAATGCAATCTGCGCGCCCTGAACGACGAGCAAATCGATGATAT
AGTTATTGCAAGCTTTCTAGACC
BO04058.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-PA | 594 | CG6683-RA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-RA | 990 | CG6683-RA | 75..665 | 17..607 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8514199..8514643 | 607..163 | 2225 | 100 | Minus |
| 3L | 28110227 | 3L | 8514700..8514847 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:40:58 has no hits.
BO04058.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:29 Download gff for
BO04058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-PA | 1..594 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:04 Download gff for
BO04058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-PA | 1..594 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:39:43 Download gff for
BO04058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 67..675 | 7..615 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:20 Download gff for
BO04058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 67..675 | 7..615 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:20 Download gff for
BO04058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8514189..8514641 | 165..615 | 99 | <- | Minus |
| 3L | 8514700..8514855 | 7..164 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:39:43 Download gff for
BO04058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8507289..8507741 | 165..615 | 99 | <- | Minus |
| arm_3L | 8507800..8507955 | 7..164 | 97 | | Minus |
BO04058.complete Sequence
625 bp (625 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629618
> BO04058.complete
GAAGTTATCAGTCGACATGTCGCAGTTCGACACGCGACTTATTGAGCTGG
TTAGGGCTAATCCCAAGCTTTATGAGCGCGAACTTAGAAACGCACCCTAC
GAAGCGCATAAGAAGCGACATCCGGAAATCTGGAGCAGCATCGCCACTTC
ATTAAATTCAGAAGCTAGTGCCTGTGTCAGTCGTTGGAATCATCTGGTGG
CCAAACAGCGTCGGGAGCTGGCCAAAGAAAAGGCCGGAGGCACTGGCTCC
GATTGGAGTCTTCTGCCGCATTTGAAATTCCTGCAGCATCACCACCATCC
GATTAATCACCGAAATTCGGGTGATCTGAGTAGGAGCACACTGAAATCCA
GCGACGAGGTCAACGATGATGAGGATCCGCTCCAGGAGGCCATGGATGAG
CAGCTGGCCGTTGCGGGAGCTGCACCAGCACCACCCACAAATCCTGCCCA
TGCAACGCCAGTGGCTCAAGCAGAAAAGAGGATAGAAGCCCTGCTTGAAG
GACTGGGCGAAGCAAACCGAATTAAGGCGGAGAAACGCATTCTGGCCTAC
CTATGCAAATGCAATCTGCGCGCCCTGAACGACGAGCAAATCGATGATAT
AGTTATTGCAAGCTTTCTAGACCAT
BO04058.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-RA | 594 | CG6683-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-RA | 990 | CG6683-RA | 75..665 | 17..607 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8514199..8514643 | 607..163 | 2225 | 100 | Minus |
| 3L | 28110227 | 3L | 8514700..8514847 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:59:11 has no hits.
BO04058.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:26 Download gff for
BO04058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 1..594 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:23 Download gff for
BO04058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 37..645 | 7..615 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:56 Download gff for
BO04058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 75..665 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:26 Download gff for
BO04058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 37..645 | 7..615 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:27 Download gff for
BO04058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 75..665 | 17..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:27 Download gff for
BO04058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8514197..8514641 | 165..609 | 99 | <- | Minus |
| 3L | 8514700..8514847 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:56 Download gff for
BO04058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8507297..8507741 | 165..609 | 99 | <- | Minus |
| arm_3L | 8507800..8507947 | 17..164 | 100 | | Minus |
BO04058.pep Sequence
Translation from 16 to 625
> BO04058.pep
MSQFDTRLIELVRANPKLYERELRNAPYEAHKKRHPEIWSSIATSLNSEA
SACVSRWNHLVAKQRRELAKEKAGGTGSDWSLLPHLKFLQHHHHPINHRN
SGDLSRSTLKSSDEVNDDEDPLQEAMDEQLAVAGAAPAPPTNPAHATPVA
QAEKRIEALLEGLGEANRIKAEKRILAYLCKCNLRALNDEQIDDIVIASF
LDH
BO04058.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-PA | 197 | CG6683-PA | 1..197 | 1..197 | 1027 | 100 | Plus |
| CG9948-PC | 218 | CG9948-PC | 11..218 | 4..197 | 205 | 28.8 | Plus |
| CG9948-PB | 218 | CG9948-PB | 11..218 | 4..197 | 205 | 28.8 | Plus |
| CG9948-PA | 218 | CG9948-PA | 11..218 | 4..197 | 205 | 28.8 | Plus |
