Clone BO04059 Report

Search the DGRC for BO04059

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptMED9-RC
Protein status:BO04059.pep: validated full length
Sequenced Size:466

Clone Sequence Records

BO04059.3prime Sequence

464 bp (463 high quality bases) assembled on 2005-12-01

> BO04059.3prime
ATGGTCTAGAAAGCTTGCGAACTCTGTGTCCTTGTATTTGCGAATTAGCT
GCTGCTTAAGCTTCAGCTGATTTCGCAGTAGTTCCAGTCTCTGTTGCTGC
TCCTCCTTATTGAAATCGATCCCGGGGAGCTGGCGGATTTGCTCGCGTGC
CGATTCGAAGCGTTTTTGAAGTTCAAAGATCTTGTGGTTGCAATCCTGGG
ACTCGCGCAGCTTAACGGCGTTCTCCAGAGGATCCTTTTCCACGCAGCGC
ACAATGTCGTAGATTATCGGCAGAATCTCAATGTCCAACTGGTCAACCGT
CAGATGGCACTGGCCGCCGATTCCGTTGGATGTTTGCGTCTCCTGCGATA
TGGTCGGCTCGAAGGGGGAGTTCGAAGTCTGAACCAGGCCGTCGGCGGTT
AGGATGGGTTTTCTGTCCTCGATCTGATTGTTTGGCGACAAATCCATCAT
GTCGACTGATAACT

BO04059.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5134-PC 435 MED9-RC 1..432 450..19 2160 100 Minus
CG5134-PB 528 MED9-RB 1..272 450..179 1360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
MED9-RC 871 CG42517-RC 63..494 450..19 2160 100 Minus
CG42518-RA 871 CG42518-RA 63..494 450..19 2160 100 Minus
CG42518-RB 825 CG42518-RB 43..448 424..19 2030 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18167317..18167522 450..245 1030 100 Minus
2R 25286936 2R 18167771..18167934 182..19 820 100 Minus
2R 25286936 2R 18167657..18167721 245..181 325 100 Minus
Blast to na_te.dros performed 2015-02-09 18:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6854 112..48 115 66.2 Minus
roo 9092 roo DM_ROO 9092bp 1089..1150 107..46 112 64.5 Minus
roo 9092 roo DM_ROO 9092bp 1128..1204 101..23 111 62 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6810..6865 104..49 109 66.1 Minus

BO04059.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:30 Download gff for BO04059.3prime
Subject Subject Range Query Range Percent Splice Strand
MED9-PC 1..435 18..450 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:06 Download gff for BO04059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5134-PC 1..435 18..450 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:57:50 Download gff for BO04059.3prime
Subject Subject Range Query Range Percent Splice Strand
MED9-RC 63..499 13..450 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:03 Download gff for BO04059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42518-RA 63..499 13..450 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:03 Download gff for BO04059.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18167317..18167522 245..450 100 -> Minus
2R 18167658..18167721 181..244 100 -> Minus
2R 18167773..18167939 13..180 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:57:50 Download gff for BO04059.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14054822..14055027 245..450 100 -> Minus
arm_2R 14055163..14055226 181..244 100 -> Minus
arm_2R 14055278..14055444 13..180 98   Minus

BO04059.5prime Sequence

464 bp (463 high quality bases) assembled on 2005-12-01

> BO04059.5prime
GAAGTTATCAGTCGACATGATGGATTTGTCGCCAAACAATCAGATCGAGG
ACAGAAAACCCATCCTAACCGCCGACGGCCTGGTTCAGACTTCGAACTCC
CCCTTCGAGCCGACCATATCGCAGGAGACGCAAACATCCAACGGAATCGG
CGGCCAGTGCCATCTGACGGTTGACCAGTTGGACATTGAGATTCTGCCGA
TAATCTACGACATTGTGCGCTGCGTGGAAAAGGATCCTCTGGAGAACGCC
GTTAAGCTGCGCGAGTCCCAGGATTGCAACCACAAGATCTTTGAACTTCA
AAAACGCTTCGAATCGGCACGCGAGCAAATCCGCCAGCTCCCCGGGATCG
ATTTCAATAAGGAGGAGCAGCAACAGAGACTGGAACTACTGCGAAATCAG
CTGAAGCTTAAGCAGCAGCTAATTCGCAAATACAAGGACACAGAGTTCGC
AAGCTTTCTAGACC

BO04059.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5134-PC 435 MED9-RC 1..432 17..448 2160 100 Plus
CG5134-PB 528 MED9-RB 1..272 17..288 1360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
MED9-RC 871 CG42517-RC 63..494 17..448 2160 100 Plus
CG42518-RA 871 CG42518-RA 63..494 17..448 2160 100 Plus
CG42518-RB 825 CG42518-RB 43..448 43..448 2030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18167317..18167522 17..222 1030 100 Plus
2R 25286936 2R 18167771..18167934 285..448 820 100 Plus
2R 25286936 2R 18167657..18167721 222..286 325 100 Plus
Blast to na_te.dros performed 2015-02-04 19:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6854 355..419 115 66.2 Plus
roo 9092 roo DM_ROO 9092bp 1089..1150 360..421 112 64.5 Plus
roo 9092 roo DM_ROO 9092bp 1128..1204 366..444 111 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6810..6865 363..418 109 66.1 Plus

BO04059.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:31 Download gff for BO04059.5prime
Subject Subject Range Query Range Percent Splice Strand
MED9-PC 1..435 17..449 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:07 Download gff for BO04059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5134-PC 1..435 17..449 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:18 Download gff for BO04059.5prime
Subject Subject Range Query Range Percent Splice Strand
MED9-RC 63..499 17..454 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:23 Download gff for BO04059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42518-RA 63..499 17..454 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:23 Download gff for BO04059.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18167317..18167522 17..222 100 -> Plus
2R 18167658..18167721 223..286 100 -> Plus
2R 18167773..18167939 287..454 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:18 Download gff for BO04059.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14054822..14055027 17..222 100 -> Plus
arm_2R 14055163..14055226 223..286 100 -> Plus
arm_2R 14055278..14055444 287..454 98   Plus

BO04059.complete Sequence

466 bp (466 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629619

> BO04059.complete
GAAGTTATCAGTCGACATGATGGATTTGTCGCCAAACAATCAGATCGAGG
ACAGAAAACCCATCCTAACCGCCGACGGCCTGGTTCAGACTTCGAACTCC
CCCTTCGAGCCGACCATATCGCAGGAGACGCAAACATCCAACGGAATCGG
CGGCCAGTGCCATCTGACGGTTGACCAGTTGGACATTGAGATTCTGCCGA
TAATCTACGACATTGTGCGCTGCGTGGAAAAGGATCCTCTGGAGAACGCC
GTTAAGCTGCGCGAGTCCCAGGATTGCAACCACAAGATCTTTGAACTTCA
AAAACGCTTCGAATCGGCACGCGAGCAAATCCGCCAGCTCCCCGGGATCG
ATTTCAATAAGGAGGAGCAGCAACAGAGACTGGAACTACTGCGAAATCAG
CTGAAGCTTAAGCAGCAGCTAATTCGCAAATACAAGGACACAGAGTTCGC
AAGCTTTCTAGACCAT

BO04059.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
MED9-RC 435 CG42517-PC 1..432 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
MED9-RC 871 CG42517-RC 63..494 17..448 2160 100 Plus
CG42518-RA 871 CG42518-RA 63..494 17..448 2160 100 Plus
CG42518-RB 825 CG42518-RB 43..448 43..448 2030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18167317..18167522 17..222 1030 100 Plus
2R 25286936 2R 18167771..18167934 285..448 820 100 Plus
2R 25286936 2R 18167657..18167721 222..286 325 100 Plus
Blast to na_te.dros performed 2014-11-27 14:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6854 355..419 115 66.2 Plus
roo 9092 roo DM_ROO 9092bp 1089..1150 360..421 112 64.5 Plus
roo 9092 roo DM_ROO 9092bp 1128..1204 366..444 111 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6810..6865 363..418 109 66.1 Plus

BO04059.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:27 Download gff for BO04059.complete
Subject Subject Range Query Range Percent Splice Strand
MED9-RC 1..435 17..449 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:05 Download gff for BO04059.complete
Subject Subject Range Query Range Percent Splice Strand
MED9-RC 41..477 17..454 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:26 Download gff for BO04059.complete
Subject Subject Range Query Range Percent Splice Strand
MED9-RC 63..494 17..450 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:27 Download gff for BO04059.complete
Subject Subject Range Query Range Percent Splice Strand
MED9-RC 41..477 17..454 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:49 Download gff for BO04059.complete
Subject Subject Range Query Range Percent Splice Strand
CG42518-RA 63..494 17..450 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:49 Download gff for BO04059.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18167317..18167522 17..222 100 -> Plus
2R 18167658..18167721 223..286 100 -> Plus
2R 18167773..18167934 287..450 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:26 Download gff for BO04059.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14055278..14055439 287..450 98   Plus
arm_2R 14054822..14055027 17..222 100 -> Plus
arm_2R 14055163..14055226 223..286 100 -> Plus

BO04059.pep Sequence

Translation from 16 to 466

> BO04059.pep
MMDLSPNNQIEDRKPILTADGLVQTSNSPFEPTISQETQTSNGIGGQCHL
TVDQLDIEILPIIYDIVRCVEKDPLENAVKLRESQDCNHKIFELQKRFES
AREQIRQLPGIDFNKEEQQQRLELLRNQLKLKQQLIRKYKDTEFASFLDH

BO04059.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
MED9-PC 144 CG42517-PC 1..144 1..144 740 100 Plus