Clone Sequence Records
BO04059.3prime Sequence
464 bp (463 high quality bases) assembled on 2005-12-01
> BO04059.3prime
ATGGTCTAGAAAGCTTGCGAACTCTGTGTCCTTGTATTTGCGAATTAGCT
GCTGCTTAAGCTTCAGCTGATTTCGCAGTAGTTCCAGTCTCTGTTGCTGC
TCCTCCTTATTGAAATCGATCCCGGGGAGCTGGCGGATTTGCTCGCGTGC
CGATTCGAAGCGTTTTTGAAGTTCAAAGATCTTGTGGTTGCAATCCTGGG
ACTCGCGCAGCTTAACGGCGTTCTCCAGAGGATCCTTTTCCACGCAGCGC
ACAATGTCGTAGATTATCGGCAGAATCTCAATGTCCAACTGGTCAACCGT
CAGATGGCACTGGCCGCCGATTCCGTTGGATGTTTGCGTCTCCTGCGATA
TGGTCGGCTCGAAGGGGGAGTTCGAAGTCTGAACCAGGCCGTCGGCGGTT
AGGATGGGTTTTCTGTCCTCGATCTGATTGTTTGGCGACAAATCCATCAT
GTCGACTGATAACT
BO04059.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5134-PC | 435 | MED9-RC | 1..432 | 450..19 | 2160 | 100 | Minus |
CG5134-PB | 528 | MED9-RB | 1..272 | 450..179 | 1360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:31:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED9-RC | 871 | CG42517-RC | 63..494 | 450..19 | 2160 | 100 | Minus |
CG42518-RA | 871 | CG42518-RA | 63..494 | 450..19 | 2160 | 100 | Minus |
CG42518-RB | 825 | CG42518-RB | 43..448 | 424..19 | 2030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18167317..18167522 | 450..245 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 18167771..18167934 | 182..19 | 820 | 100 | Minus |
2R | 25286936 | 2R | 18167657..18167721 | 245..181 | 325 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 18:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6854 | 112..48 | 115 | 66.2 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1150 | 107..46 | 112 | 64.5 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1128..1204 | 101..23 | 111 | 62 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6865 | 104..49 | 109 | 66.1 | Minus |
BO04059.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:30 Download gff for
BO04059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED9-PC | 1..435 | 18..450 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:06 Download gff for
BO04059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5134-PC | 1..435 | 18..450 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:57:50 Download gff for
BO04059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED9-RC | 63..499 | 13..450 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:03 Download gff for
BO04059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42518-RA | 63..499 | 13..450 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:03 Download gff for
BO04059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18167317..18167522 | 245..450 | 100 | -> | Minus |
2R | 18167658..18167721 | 181..244 | 100 | -> | Minus |
2R | 18167773..18167939 | 13..180 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:57:50 Download gff for
BO04059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14054822..14055027 | 245..450 | 100 | -> | Minus |
arm_2R | 14055163..14055226 | 181..244 | 100 | -> | Minus |
arm_2R | 14055278..14055444 | 13..180 | 98 | | Minus |
BO04059.5prime Sequence
464 bp (463 high quality bases) assembled on 2005-12-01
> BO04059.5prime
GAAGTTATCAGTCGACATGATGGATTTGTCGCCAAACAATCAGATCGAGG
ACAGAAAACCCATCCTAACCGCCGACGGCCTGGTTCAGACTTCGAACTCC
CCCTTCGAGCCGACCATATCGCAGGAGACGCAAACATCCAACGGAATCGG
CGGCCAGTGCCATCTGACGGTTGACCAGTTGGACATTGAGATTCTGCCGA
TAATCTACGACATTGTGCGCTGCGTGGAAAAGGATCCTCTGGAGAACGCC
GTTAAGCTGCGCGAGTCCCAGGATTGCAACCACAAGATCTTTGAACTTCA
AAAACGCTTCGAATCGGCACGCGAGCAAATCCGCCAGCTCCCCGGGATCG
ATTTCAATAAGGAGGAGCAGCAACAGAGACTGGAACTACTGCGAAATCAG
CTGAAGCTTAAGCAGCAGCTAATTCGCAAATACAAGGACACAGAGTTCGC
AAGCTTTCTAGACC
BO04059.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5134-PC | 435 | MED9-RC | 1..432 | 17..448 | 2160 | 100 | Plus |
CG5134-PB | 528 | MED9-RB | 1..272 | 17..288 | 1360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED9-RC | 871 | CG42517-RC | 63..494 | 17..448 | 2160 | 100 | Plus |
CG42518-RA | 871 | CG42518-RA | 63..494 | 17..448 | 2160 | 100 | Plus |
CG42518-RB | 825 | CG42518-RB | 43..448 | 43..448 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18167317..18167522 | 17..222 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 18167771..18167934 | 285..448 | 820 | 100 | Plus |
2R | 25286936 | 2R | 18167657..18167721 | 222..286 | 325 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 19:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6854 | 355..419 | 115 | 66.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1150 | 360..421 | 112 | 64.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1128..1204 | 366..444 | 111 | 62 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6865 | 363..418 | 109 | 66.1 | Plus |
BO04059.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:31 Download gff for
BO04059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED9-PC | 1..435 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:07 Download gff for
BO04059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5134-PC | 1..435 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:18 Download gff for
BO04059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED9-RC | 63..499 | 17..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:23 Download gff for
BO04059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42518-RA | 63..499 | 17..454 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:23 Download gff for
BO04059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18167317..18167522 | 17..222 | 100 | -> | Plus |
2R | 18167658..18167721 | 223..286 | 100 | -> | Plus |
2R | 18167773..18167939 | 287..454 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:18 Download gff for
BO04059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14054822..14055027 | 17..222 | 100 | -> | Plus |
arm_2R | 14055163..14055226 | 223..286 | 100 | -> | Plus |
arm_2R | 14055278..14055444 | 287..454 | 98 | | Plus |
BO04059.complete Sequence
466 bp (466 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629619
> BO04059.complete
GAAGTTATCAGTCGACATGATGGATTTGTCGCCAAACAATCAGATCGAGG
ACAGAAAACCCATCCTAACCGCCGACGGCCTGGTTCAGACTTCGAACTCC
CCCTTCGAGCCGACCATATCGCAGGAGACGCAAACATCCAACGGAATCGG
CGGCCAGTGCCATCTGACGGTTGACCAGTTGGACATTGAGATTCTGCCGA
TAATCTACGACATTGTGCGCTGCGTGGAAAAGGATCCTCTGGAGAACGCC
GTTAAGCTGCGCGAGTCCCAGGATTGCAACCACAAGATCTTTGAACTTCA
AAAACGCTTCGAATCGGCACGCGAGCAAATCCGCCAGCTCCCCGGGATCG
ATTTCAATAAGGAGGAGCAGCAACAGAGACTGGAACTACTGCGAAATCAG
CTGAAGCTTAAGCAGCAGCTAATTCGCAAATACAAGGACACAGAGTTCGC
AAGCTTTCTAGACCAT
BO04059.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED9-RC | 435 | CG42517-PC | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED9-RC | 871 | CG42517-RC | 63..494 | 17..448 | 2160 | 100 | Plus |
CG42518-RA | 871 | CG42518-RA | 63..494 | 17..448 | 2160 | 100 | Plus |
CG42518-RB | 825 | CG42518-RB | 43..448 | 43..448 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18167317..18167522 | 17..222 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 18167771..18167934 | 285..448 | 820 | 100 | Plus |
2R | 25286936 | 2R | 18167657..18167721 | 222..286 | 325 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6854 | 355..419 | 115 | 66.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1150 | 360..421 | 112 | 64.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1128..1204 | 366..444 | 111 | 62 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6865 | 363..418 | 109 | 66.1 | Plus |
BO04059.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:27 Download gff for
BO04059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED9-RC | 1..435 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:05 Download gff for
BO04059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED9-RC | 41..477 | 17..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:26 Download gff for
BO04059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED9-RC | 63..494 | 17..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:27 Download gff for
BO04059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED9-RC | 41..477 | 17..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:49 Download gff for
BO04059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42518-RA | 63..494 | 17..450 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:49 Download gff for
BO04059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18167317..18167522 | 17..222 | 100 | -> | Plus |
2R | 18167658..18167721 | 223..286 | 100 | -> | Plus |
2R | 18167773..18167934 | 287..450 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:26 Download gff for
BO04059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14055278..14055439 | 287..450 | 98 | | Plus |
arm_2R | 14054822..14055027 | 17..222 | 100 | -> | Plus |
arm_2R | 14055163..14055226 | 223..286 | 100 | -> | Plus |
BO04059.pep Sequence
Translation from 16 to 466
> BO04059.pep
MMDLSPNNQIEDRKPILTADGLVQTSNSPFEPTISQETQTSNGIGGQCHL
TVDQLDIEILPIIYDIVRCVEKDPLENAVKLRESQDCNHKIFELQKRFES
AREQIRQLPGIDFNKEEQQQRLELLRNQLKLKQQLIRKYKDTEFASFLDH
BO04059.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED9-PC | 144 | CG42517-PC | 1..144 | 1..144 | 740 | 100 | Plus |