Clone BO04061 Report

Search the DGRC for BO04061

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG11986-RA
Protein status:BO04061.pep: validated full length
Sequenced Size:1138

Clone Sequence Records

BO04061.3prime Sequence

934 bp (768 high quality bases) assembled on 2005-12-01

> BO04061.3prime
ATGGTCTAGAAAGCTTGCGCTGCCGCTGCTCTGCGGGGGAGCTGCCGTAC
GATTCCTCTTAAAGTCCCTGAATCTGGGTCGCTTGGCGGGCCTCTCTACG
GGTGAGCCGTCAGCGGAGGTCCCTCCCATGGTCGTAGCTTCTTTTTCCTG
ATCCTCATCGTCGCTCTGTTTTGCTTTGATTTGATCTTCCCGCTTCTTAC
GGGCATTCAGCCAAGACATCATCGTTTTGTTCATCGGTGGCTTTGCGGGC
TTAGCCGCCAATTCGATCGGCTTGTTGCACTCCTCGCTTTTGTTTCGCGA
GTTGTTTACCAGCTTGGTAACACGATGCCACTGCAGTTCGGTAGCCGGAC
GCAATGTAGCCAAGGCCTCCTTGTCGCTAACTCGCTTAAAGTCCAGCCAA
TCATTCATCTGCTGCTCGGTTTCCAGGATCGCTGGCATGCGGTAGTGCAT
CCAGGACATAATTTTGCTGGACTGGAAGGTGATAATACTGTAGCTGTACA
TCTTGTCGCCACTTTCATCCTCCCAGACGTCAAAAAGTCCAGCCATTCGC
AAAAGCTTCACATCCTGGGGCGACCATGTATTCTTGTCGTAGATCTTCAC
ATCCGCCGCCTGGGGTACGAATACCAGGTAAGCCTCACGCTCCGATGGCT
TCTTCGCAGGTCCAGCCGTCTGCCACTCATAGAATCCTTCGCAAATAACT
ACACACCGCTGACCTCGCTTGAAGGGACCGCGATAGAGCTTGGAGTCCAT
CAGGTGTTCCAGACGGCAATTGGTTGGTGGGTAGGCCATGCCGCCGATAG
TCACCCTTGTGCCAAAAGGGAATCATGCCCCACATCATGGGCGTTACCAC
GCGGGCGCACTCTTGATCCTCGGCGTCTGAAAAATGAGCTGCGGACACGA
TCACGGGCGTAATATCAGTAGGGGCTATGTTGTA

BO04061.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11986-PA 1107 CG11986-RA 351..1104 772..19 3770 100 Minus
CG11986-PA 1107 CG11986-RA 190..341 934..783 760 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11986-RA 1262 CG11986-RA 244..1158 934..19 4525 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9015738..9016269 934..402 2585 99.4 Minus
3R 32079331 3R 9016335..9016718 402..19 1920 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:27:32 has no hits.

BO04061.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:33 Download gff for BO04061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11986-PA 191..1107 18..933 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:10 Download gff for BO04061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11986-PA 191..1107 18..933 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:00 Download gff for BO04061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 245..1158 19..933 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:16 Download gff for BO04061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 245..1158 19..933 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:16 Download gff for BO04061.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9015739..9016268 403..933 99 -> Minus
3R 9016335..9016718 19..402 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:00 Download gff for BO04061.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4841461..4841990 403..933 99 -> Minus
arm_3R 4842057..4842440 19..402 100   Minus

BO04061.5prime Sequence

939 bp (831 high quality bases) assembled on 2006-02-03

> BO04061.5prime
GAAGTTATCAGTCGACATGTGTGGACGCACCTGTCTAACTCTAGACCCTG
ATCAGGTAATTTGTGCCTGTAAATATCCAAAAAAATCTACTCGAAAGGAG
CCGGATTTCAAAGAGAAAGATGATATGAAAGATGGGGAAGGATCCGAAAT
GGAGACTCCCGAGTGGAGGGCGGAATACAACCTGGGTAGACGCTACCAGG
CCTCCTACAACATAGCCCCTACTGATATTACGCCCGTGATCGTGTCCGCA
GCTCATTTTTCAGACGCCGAGGATCAAGAGTGCGCCCGCGTGGTAACGCC
CATGATGTGGGGCATGATTCCCTTTTGGCACAAGGGTGACTATCGGCGGC
ATGGCCTTACCACCAACAATTGCCGTCTGGAACACCTGATGGACTCCAAG
CTCTATCGCGGTCCCTTCAAGCGAGGTCAGCGGTGTGTAGTTATTTGCGA
AGGATTCTATGAGTGGCAGACGGCTGGACCTGCGAAGAAGCCATCGGAGC
GTGAGGCTTACCTGGTATTCGTACCCCAGGCGGCGGATGTGAAGATCTAC
GACAAGAATACATGGTCGCCCCAGGATGTGAAGCTTTTGCGAATGGCTGG
ACTTTTTGACGTCTGGGAGGATGAAAGTGGCGACAAGATGTACAGCTACA
GTATTATCACCTTCCAGTCCAGCAAAATTATGTCCTGGATGCACTACCGC
ATGCCAGCGATCCTGGAAACCGAGCAGCAGATGAATGATTGGCTGGACTT
TAAGCGAGTTAGCGACAAGGAGGCCTTGGCTACATTGCGTCCGGCTACCG
AACTGCAGTGGCATCGTGTTACCAAGCTGGTAACAACTCGCGAAACAAAA
GCGAGGAGTGCAACAAGCCGATCGAATTGGCGGCTAAGCCCGCAAGCCAC
CGATGAACAAAACGATGATGTCTTGGCTGAATGCCCCGT

BO04061.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11986-PA 1107 CG11986-RA 1..817 17..833 4085 100 Plus
CG11986-PA 1107 CG11986-RA 817..880 832..895 320 100 Plus
CG11986-PA 1107 CG11986-RA 880..922 894..936 215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11986-RA 1262 CG11986-RA 55..976 17..936 4560 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9015569..9016269 37..737 3505 100 Plus
3R 32079331 3R 9016335..9016536 737..936 910 99 Plus
Blast to na_te.dros performed on 2015-02-11 22:59:21 has no hits.

BO04061.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:34 Download gff for BO04061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11986-PA 1..924 17..939 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:11 Download gff for BO04061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11986-PA 1..924 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:34:55 Download gff for BO04061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 48..978 7..939 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:43 Download gff for BO04061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 48..978 7..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:43 Download gff for BO04061.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9016335..9016538 737..939 98   Plus
3R 9015569..9016268 37..736 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:34:55 Download gff for BO04061.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4841291..4841990 37..736 100 -> Plus
arm_3R 4842057..4842260 737..939 98   Plus

BO04061.complete Sequence

1138 bp (1138 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629620

> BO04061.complete
GAAGTTATCAGTCGACATGTGTGGACGCACCTGTCTAACTCTAGACCCTG
ATCAGGTAATTTGTGCCTGTAAATATCCAAAAAAATCTACTCGAAAGGAG
CCGGATTTCAAAGAGAAAGATGATATGAAAGATGGGGAAGGATCCGAAAT
GGAGACTCCCGAGTGGAGGGCGGAATACAACCTGGGTAGACGCTACCAGG
CCTCCTACAACATAGCCCCTACTGATATTACGCCCGTGATCGTGTCCGCA
GCTCATTTTTCAGACGCCGAGGATCAAGAGTGCGCCCGCGTGGTAACGCC
CATGATGTGGGGCATGATTCCCTTTTGGCACAAGGGTGACTATCGGCGGC
ATGGCCTTACCACCAACAATTGCCGTCTGGAACACCTGATGGACTCCAAG
CTCTATCGCGGTCCCTTCAAGCGAGGTCAGCGGTGTGTAGTTATTTGCGA
AGGATTCTATGAGTGGCAGACGGCTGGACCTGCGAAGAAGCCATCGGAGC
GTGAGGCTTACCTGGTATTCGTACCCCAGGCGGCGGATGTGAAGATCTAC
GACAAGAATACATGGTCGCCCCAGGATGTGAAGCTTTTGCGAATGGCTGG
ACTTTTTGACGTCTGGGAGGATGAAAGTGGCGACAAGATGTACAGCTACA
GTATTATCACCTTCCAGTCCAGCAAAATTATGTCCTGGATGCACTACCGC
ATGCCAGCGATCCTGGAAACCGAGCAGCAGATGAATGATTGGCTGGACTT
TAAGCGAGTTAGCGACAAGGAGGCCTTGGCTACATTGCGTCCGGCTACCG
AACTGCAGTGGCATCGTGTTACCAAGCTGGTAAACAACTCGCGAAACAAA
AGCGAGGAGTGCAACAAGCCGATCGAATTGGCGGCTAAGCCCGCAAAGCC
ACCGATGAACAAAACGATGATGTCTTGGCTGAATGCCCGTAAGAAGCGGG
AAGATCAAATCAAAGCAAAACAGAGCGACGATGAGGATCAGGAAAAAGAA
GCTACGACCATGGGAGGGACCTCCGCTGACGGCTCACCCGTAGAGAGGCC
CGCCAAGCGACCCAGATTCAGGGACTTTAAGAGGAATCGTACGGCAGCTC
CCCCGCAGAGCAGCGGCAGCGCAAGCTTTCTAGACCAT

BO04061.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11986-RA 1107 CG11986-PA 1..1104 17..1120 5520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11986-RA 1262 CG11986-RA 55..1158 17..1120 5520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9015569..9016269 37..737 3505 100 Plus
3R 32079331 3R 9016335..9016718 737..1120 1920 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:09:54 has no hits.

BO04061.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:17 Download gff for BO04061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 1..1107 17..1121 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:44 Download gff for BO04061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 48..1158 7..1120 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:04 Download gff for BO04061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 55..1158 17..1122 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:17 Download gff for BO04061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 48..1158 7..1120 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:16 Download gff for BO04061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 55..1158 17..1122 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:16 Download gff for BO04061.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9015500..9015519 17..36 100 -> Plus
3R 9015569..9016268 37..736 100 -> Plus
3R 9016335..9016718 737..1122 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:04 Download gff for BO04061.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4842057..4842440 737..1122 99   Plus
arm_3R 4841222..4841241 17..36 100 -> Plus
arm_3R 4841291..4841990 37..736 100 -> Plus

BO04061.pep Sequence

Translation from 16 to 1138

> BO04061.pep
MCGRTCLTLDPDQVICACKYPKKSTRKEPDFKEKDDMKDGEGSEMETPEW
RAEYNLGRRYQASYNIAPTDITPVIVSAAHFSDAEDQECARVVTPMMWGM
IPFWHKGDYRRHGLTTNNCRLEHLMDSKLYRGPFKRGQRCVVICEGFYEW
QTAGPAKKPSEREAYLVFVPQAADVKIYDKNTWSPQDVKLLRMAGLFDVW
EDESGDKMYSYSIITFQSSKIMSWMHYRMPAILETEQQMNDWLDFKRVSD
KEALATLRPATELQWHRVTKLVNNSRNKSEECNKPIELAAKPAKPPMNKT
MMSWLNARKKREDQIKAKQSDDEDQEKEATTMGGTSADGSPVERPAKRPR
FRDFKRNRTAAPPQSSGSASFLDH

BO04061.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11986-PA 368 CG11986-PA 1..368 1..368 1993 100 Plus