Clone Sequence Records
BO04061.3prime Sequence
934 bp (768 high quality bases) assembled on 2005-12-01
> BO04061.3prime
ATGGTCTAGAAAGCTTGCGCTGCCGCTGCTCTGCGGGGGAGCTGCCGTAC
GATTCCTCTTAAAGTCCCTGAATCTGGGTCGCTTGGCGGGCCTCTCTACG
GGTGAGCCGTCAGCGGAGGTCCCTCCCATGGTCGTAGCTTCTTTTTCCTG
ATCCTCATCGTCGCTCTGTTTTGCTTTGATTTGATCTTCCCGCTTCTTAC
GGGCATTCAGCCAAGACATCATCGTTTTGTTCATCGGTGGCTTTGCGGGC
TTAGCCGCCAATTCGATCGGCTTGTTGCACTCCTCGCTTTTGTTTCGCGA
GTTGTTTACCAGCTTGGTAACACGATGCCACTGCAGTTCGGTAGCCGGAC
GCAATGTAGCCAAGGCCTCCTTGTCGCTAACTCGCTTAAAGTCCAGCCAA
TCATTCATCTGCTGCTCGGTTTCCAGGATCGCTGGCATGCGGTAGTGCAT
CCAGGACATAATTTTGCTGGACTGGAAGGTGATAATACTGTAGCTGTACA
TCTTGTCGCCACTTTCATCCTCCCAGACGTCAAAAAGTCCAGCCATTCGC
AAAAGCTTCACATCCTGGGGCGACCATGTATTCTTGTCGTAGATCTTCAC
ATCCGCCGCCTGGGGTACGAATACCAGGTAAGCCTCACGCTCCGATGGCT
TCTTCGCAGGTCCAGCCGTCTGCCACTCATAGAATCCTTCGCAAATAACT
ACACACCGCTGACCTCGCTTGAAGGGACCGCGATAGAGCTTGGAGTCCAT
CAGGTGTTCCAGACGGCAATTGGTTGGTGGGTAGGCCATGCCGCCGATAG
TCACCCTTGTGCCAAAAGGGAATCATGCCCCACATCATGGGCGTTACCAC
GCGGGCGCACTCTTGATCCTCGGCGTCTGAAAAATGAGCTGCGGACACGA
TCACGGGCGTAATATCAGTAGGGGCTATGTTGTA
BO04061.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11986-PA | 1107 | CG11986-RA | 351..1104 | 772..19 | 3770 | 100 | Minus |
CG11986-PA | 1107 | CG11986-RA | 190..341 | 934..783 | 760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:27:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11986-RA | 1262 | CG11986-RA | 244..1158 | 934..19 | 4525 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:27:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9015738..9016269 | 934..402 | 2585 | 99.4 | Minus |
3R | 32079331 | 3R | 9016335..9016718 | 402..19 | 1920 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:27:32 has no hits.
BO04061.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:33 Download gff for
BO04061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11986-PA | 191..1107 | 18..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:10 Download gff for
BO04061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11986-PA | 191..1107 | 18..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:00 Download gff for
BO04061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11986-RA | 245..1158 | 19..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:16 Download gff for
BO04061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11986-RA | 245..1158 | 19..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:16 Download gff for
BO04061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9015739..9016268 | 403..933 | 99 | -> | Minus |
3R | 9016335..9016718 | 19..402 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:00 Download gff for
BO04061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4841461..4841990 | 403..933 | 99 | -> | Minus |
arm_3R | 4842057..4842440 | 19..402 | 100 | | Minus |
BO04061.5prime Sequence
939 bp (831 high quality bases) assembled on 2006-02-03
> BO04061.5prime
GAAGTTATCAGTCGACATGTGTGGACGCACCTGTCTAACTCTAGACCCTG
ATCAGGTAATTTGTGCCTGTAAATATCCAAAAAAATCTACTCGAAAGGAG
CCGGATTTCAAAGAGAAAGATGATATGAAAGATGGGGAAGGATCCGAAAT
GGAGACTCCCGAGTGGAGGGCGGAATACAACCTGGGTAGACGCTACCAGG
CCTCCTACAACATAGCCCCTACTGATATTACGCCCGTGATCGTGTCCGCA
GCTCATTTTTCAGACGCCGAGGATCAAGAGTGCGCCCGCGTGGTAACGCC
CATGATGTGGGGCATGATTCCCTTTTGGCACAAGGGTGACTATCGGCGGC
ATGGCCTTACCACCAACAATTGCCGTCTGGAACACCTGATGGACTCCAAG
CTCTATCGCGGTCCCTTCAAGCGAGGTCAGCGGTGTGTAGTTATTTGCGA
AGGATTCTATGAGTGGCAGACGGCTGGACCTGCGAAGAAGCCATCGGAGC
GTGAGGCTTACCTGGTATTCGTACCCCAGGCGGCGGATGTGAAGATCTAC
GACAAGAATACATGGTCGCCCCAGGATGTGAAGCTTTTGCGAATGGCTGG
ACTTTTTGACGTCTGGGAGGATGAAAGTGGCGACAAGATGTACAGCTACA
GTATTATCACCTTCCAGTCCAGCAAAATTATGTCCTGGATGCACTACCGC
ATGCCAGCGATCCTGGAAACCGAGCAGCAGATGAATGATTGGCTGGACTT
TAAGCGAGTTAGCGACAAGGAGGCCTTGGCTACATTGCGTCCGGCTACCG
AACTGCAGTGGCATCGTGTTACCAAGCTGGTAACAACTCGCGAAACAAAA
GCGAGGAGTGCAACAAGCCGATCGAATTGGCGGCTAAGCCCGCAAGCCAC
CGATGAACAAAACGATGATGTCTTGGCTGAATGCCCCGT
BO04061.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11986-PA | 1107 | CG11986-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
CG11986-PA | 1107 | CG11986-RA | 817..880 | 832..895 | 320 | 100 | Plus |
CG11986-PA | 1107 | CG11986-RA | 880..922 | 894..936 | 215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:59:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11986-RA | 1262 | CG11986-RA | 55..976 | 17..936 | 4560 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9015569..9016269 | 37..737 | 3505 | 100 | Plus |
3R | 32079331 | 3R | 9016335..9016536 | 737..936 | 910 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:59:21 has no hits.
BO04061.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:34 Download gff for
BO04061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11986-PA | 1..924 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:11 Download gff for
BO04061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11986-PA | 1..924 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:34:55 Download gff for
BO04061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11986-RA | 48..978 | 7..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:43 Download gff for
BO04061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11986-RA | 48..978 | 7..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:43 Download gff for
BO04061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9016335..9016538 | 737..939 | 98 | | Plus |
3R | 9015569..9016268 | 37..736 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:34:55 Download gff for
BO04061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4841291..4841990 | 37..736 | 100 | -> | Plus |
arm_3R | 4842057..4842260 | 737..939 | 98 | | Plus |
BO04061.complete Sequence
1138 bp (1138 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629620
> BO04061.complete
GAAGTTATCAGTCGACATGTGTGGACGCACCTGTCTAACTCTAGACCCTG
ATCAGGTAATTTGTGCCTGTAAATATCCAAAAAAATCTACTCGAAAGGAG
CCGGATTTCAAAGAGAAAGATGATATGAAAGATGGGGAAGGATCCGAAAT
GGAGACTCCCGAGTGGAGGGCGGAATACAACCTGGGTAGACGCTACCAGG
CCTCCTACAACATAGCCCCTACTGATATTACGCCCGTGATCGTGTCCGCA
GCTCATTTTTCAGACGCCGAGGATCAAGAGTGCGCCCGCGTGGTAACGCC
CATGATGTGGGGCATGATTCCCTTTTGGCACAAGGGTGACTATCGGCGGC
ATGGCCTTACCACCAACAATTGCCGTCTGGAACACCTGATGGACTCCAAG
CTCTATCGCGGTCCCTTCAAGCGAGGTCAGCGGTGTGTAGTTATTTGCGA
AGGATTCTATGAGTGGCAGACGGCTGGACCTGCGAAGAAGCCATCGGAGC
GTGAGGCTTACCTGGTATTCGTACCCCAGGCGGCGGATGTGAAGATCTAC
GACAAGAATACATGGTCGCCCCAGGATGTGAAGCTTTTGCGAATGGCTGG
ACTTTTTGACGTCTGGGAGGATGAAAGTGGCGACAAGATGTACAGCTACA
GTATTATCACCTTCCAGTCCAGCAAAATTATGTCCTGGATGCACTACCGC
ATGCCAGCGATCCTGGAAACCGAGCAGCAGATGAATGATTGGCTGGACTT
TAAGCGAGTTAGCGACAAGGAGGCCTTGGCTACATTGCGTCCGGCTACCG
AACTGCAGTGGCATCGTGTTACCAAGCTGGTAAACAACTCGCGAAACAAA
AGCGAGGAGTGCAACAAGCCGATCGAATTGGCGGCTAAGCCCGCAAAGCC
ACCGATGAACAAAACGATGATGTCTTGGCTGAATGCCCGTAAGAAGCGGG
AAGATCAAATCAAAGCAAAACAGAGCGACGATGAGGATCAGGAAAAAGAA
GCTACGACCATGGGAGGGACCTCCGCTGACGGCTCACCCGTAGAGAGGCC
CGCCAAGCGACCCAGATTCAGGGACTTTAAGAGGAATCGTACGGCAGCTC
CCCCGCAGAGCAGCGGCAGCGCAAGCTTTCTAGACCAT
BO04061.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11986-RA | 1107 | CG11986-PA | 1..1104 | 17..1120 | 5520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11986-RA | 1262 | CG11986-RA | 55..1158 | 17..1120 | 5520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9015569..9016269 | 37..737 | 3505 | 100 | Plus |
3R | 32079331 | 3R | 9016335..9016718 | 737..1120 | 1920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:09:54 has no hits.
BO04061.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:17 Download gff for
BO04061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11986-RA | 1..1107 | 17..1121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:44 Download gff for
BO04061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11986-RA | 48..1158 | 7..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:04 Download gff for
BO04061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11986-RA | 55..1158 | 17..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:17 Download gff for
BO04061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11986-RA | 48..1158 | 7..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:16 Download gff for
BO04061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11986-RA | 55..1158 | 17..1122 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:16 Download gff for
BO04061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9015500..9015519 | 17..36 | 100 | -> | Plus |
3R | 9015569..9016268 | 37..736 | 100 | -> | Plus |
3R | 9016335..9016718 | 737..1122 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:04 Download gff for
BO04061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4842057..4842440 | 737..1122 | 99 | | Plus |
arm_3R | 4841222..4841241 | 17..36 | 100 | -> | Plus |
arm_3R | 4841291..4841990 | 37..736 | 100 | -> | Plus |
BO04061.pep Sequence
Translation from 16 to 1138
> BO04061.pep
MCGRTCLTLDPDQVICACKYPKKSTRKEPDFKEKDDMKDGEGSEMETPEW
RAEYNLGRRYQASYNIAPTDITPVIVSAAHFSDAEDQECARVVTPMMWGM
IPFWHKGDYRRHGLTTNNCRLEHLMDSKLYRGPFKRGQRCVVICEGFYEW
QTAGPAKKPSEREAYLVFVPQAADVKIYDKNTWSPQDVKLLRMAGLFDVW
EDESGDKMYSYSIITFQSSKIMSWMHYRMPAILETEQQMNDWLDFKRVSD
KEALATLRPATELQWHRVTKLVNNSRNKSEECNKPIELAAKPAKPPMNKT
MMSWLNARKKREDQIKAKQSDDEDQEKEATTMGGTSADGSPVERPAKRPR
FRDFKRNRTAAPPQSSGSASFLDH
BO04061.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11986-PA | 368 | CG11986-PA | 1..368 | 1..368 | 1993 | 100 | Plus |