Clone BO04062 Report

Search the DGRC for BO04062

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG3358-RA
Protein status:BO04062.pep: validated not full length
Sequenced Size:907

Clone Sequence Records

BO04062.3prime Sequence

905 bp (819 high quality bases) assembled on 2005-12-01

> BO04062.3prime
ATGGTCTAGAAAGCTTGCTTCTTTACTCTCTCCTGTGCCGAAGAACAAGT
CCAATGTGTTTTGGTAGTATAACGCAGCCAGCTGTTCTTTAGGCTCTTGT
TTGATTCCGGCAATAGACTCCAAAACTTGGCTGATTTGGCAAGGCTCACA
GCGTCCGTCTATTAGGGATTCAGCTGTCCATTTCTCTTTCTTCTTGACGG
TGGGAAACTTGGTGGTCACGTGCTTGTGTCCAGCATGCGAGGGTCGAATA
CCACACCACGGGCAGTCGGTTTCTAGCATTATCCTGTCGTTGGGTAGCTT
GCGCACCACTTCTGCGTTTTCATCCGTCTTTAGGGAGCACCCATTGAAGC
CTATGTAGAGACCGCCGAAGGCGAGGATGCGCTGGGCCTCCTCCAAAGTT
CCTGTAAAGCTGTGCACCACTCCGCCGCCGCACTCCTCGATCTTGTTCCG
ATTTCTTTCCAGGATGCCCATGAAGTCCTCGGCAGCATTTCTCATGTGCA
GAAAGAGAGGCAGTTTGAACTCGGCCGCTAGGTCCAGCTGCTTCTCGAAG
TACAGACGCTGGGTTTCCTGGGCGCAGAAGTGCAAGCGATCGTAGTCTAG
ACCACATTCTCCTACGGCCCGCACCTTGGTTCGATTTGCCTTGATCCTGG
ATCGCAACTGGTCATAGTAGCCCTCTGGGTCTGGTACGAATTCCTCGCAC
CGGGTGGGATGTGTTCCCACTGTCGTGTAGATGCGCTCATCCTTGGAGGC
CAGTTCCAGTGCCTCATCCACATCCTTCAGGCAGCCGGCGGTAACGATGA
CTTTCTGCAGTCCCTGTTGCCACGCGCGCTCCAAGACGATGTGCAGGTCG
GGCTCGTGCTTCTGGGTTCCGCCGTAGCAGCCCTGGAACATGTCGACTGA
TAACT

BO04062.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3358-PB 942 CG3358-RB 66..939 892..19 4370 100 Minus
CG3358-PA 876 CG3358-RA 1..873 891..19 4365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3358-RG 968 CG3358-RG 78..951 892..19 4370 100 Minus
CG3358-RF 1216 CG3358-RF 78..951 892..19 4370 100 Minus
CG3358-RE 950 CG3358-RE 60..933 892..19 4370 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6923879..6924486 738..131 3040 100 Minus
2R 25286936 2R 6923505..6923659 892..738 775 100 Minus
2R 25286936 2R 6924551..6924664 132..19 570 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:00:29 has no hits.

BO04062.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:35 Download gff for BO04062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3358-PB 66..942 15..892 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:12 Download gff for BO04062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3358-PB 66..942 15..892 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:34:57 Download gff for BO04062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3358-RE 60..936 15..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:31:43 Download gff for BO04062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3358-RE 60..936 15..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:31:43 Download gff for BO04062.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6924553..6924667 15..130 98   Minus
2R 6923505..6923659 738..892 100 -> Minus
2R 6923880..6924486 131..737 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:34:57 Download gff for BO04062.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2811010..2811164 738..892 100 -> Minus
arm_2R 2811385..2811991 131..737 100 -> Minus
arm_2R 2812058..2812172 15..130 98   Minus

BO04062.5prime Sequence

905 bp (876 high quality bases) assembled on 2006-02-03

> BO04062.5prime
GAAGTTATCAGTCGACATGTTCCAGGGCTGCTACGGCGGAACCCAGAAGC
ACGAGCCCGACCTGCACATCGTCTTGGAGCGCGCGTGGCAACAGGGACTG
CAGAAAGTCATCGTTACCGCCGGCTGCCTGAAGGATGTGGATGAGGCACT
GGAACTGGCCTCCAAGGATGAGCGCATCTACACGACAGTGGGAACACATC
CCACCCGGTGCGAGGAATTCGTACCAGACCCAGAGGGCTACTATGACCAG
TTGCGATCCAGGATCAAGGCAAATCGAACCAAGGTGCGGGCCGTAGGAGA
ATGTGGTCTAGACTACGATCGCTTGCACTTCTGCGCCCAGGAAACCCAGC
GTCTGTACTTCGAGAAGCAGCTGGACCTAGCGGCCGAGTTCAAACTGCCT
CTCTTTCTGCACATGAGAAATGCTGCCGAGGACTTCATGGGCATCCTGGA
AAGAAATCGGAACAAGATCGAGGAGTGCGGCGGCGGAGTGGTGCACAGCT
TTACAGGAACTTTGGAGGAGGCCCAGCGCATCCTCGCCTTCGGCGGTCTC
TACATAGGCTTCAATGGGTGCTCCCTAAAGACGGATGAAAACGCAGAAGT
GGTGCGCAAGCTACCCAACGACAGGATAATGCTAGAAACCGACTGCCCGT
GGTGTGGTATTCGACCCTCGCATGCTGGACACAAGCACGTGACCACCAAG
TTTCCCACCGTCAAGAAGAAAGAGAAATGGACAGCTGAATCCCTAATAGA
CGGACGCTGTGAGCCTTGCCAAATCAGCCAAGTTTTGGAGTCTATTGCCG
GAATCAAACAAGAGCCTAAAGAACAGCTGGCTGCGTTATACTACCAAAAC
ACATTGGACTTGTTCTTCGGCACAGGAGAGAGTAAAGAAGCAAGCTTTCT
AGACC

BO04062.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3358-PB 942 CG3358-RB 66..939 16..889 4370 100 Plus
CG3358-PA 876 CG3358-RA 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3358-RG 968 CG3358-RG 78..951 16..889 4370 100 Plus
CG3358-RF 1216 CG3358-RF 78..951 16..889 4370 100 Plus
CG3358-RE 950 CG3358-RE 60..933 16..889 4370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6923879..6924486 170..777 3040 100 Plus
2R 25286936 2R 6923505..6923659 16..170 775 100 Plus
2R 25286936 2R 6924551..6924664 776..889 570 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:27:40 has no hits.

BO04062.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:36 Download gff for BO04062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3358-PB 66..942 16..893 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:14 Download gff for BO04062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3358-PB 66..942 16..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:02 Download gff for BO04062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3358-RE 60..936 16..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:20 Download gff for BO04062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3358-RE 60..936 16..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:20 Download gff for BO04062.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6923505..6923659 16..170 100 -> Plus
2R 6923880..6924486 171..777 100 -> Plus
2R 6924553..6924667 778..893 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:02 Download gff for BO04062.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2811010..2811164 16..170 100 -> Plus
arm_2R 2811385..2811991 171..777 100 -> Plus
arm_2R 2812058..2812172 778..893 98   Plus

BO04062.complete Sequence

907 bp (907 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629621

> BO04062.complete
GAAGTTATCAGTCGACATGTTCCAGGGCTGCTACGGCGGAACCCAGAAGC
ACGAGCCCGACCTGCACATCGTCTTGGAGCGCGCGTGGCAACAGGGACTG
CAGAAAGTCATCGTTACCGCCGGCTGCCTGAAGGATGTGGATGAGGCACT
GGAACTGGCCTCCAAGGATGAGCGCATCTACACGACAGTGGGAACACATC
CCACCCGGTGCGAGGAATTCGTACCAGACCCAGAGGGCTACTATGACCAG
TTGCGATCCAGGATCAAGGCAAATCGAACCAAGGTGCGGGCCGTAGGAGA
ATGTGGTCTAGACTACGATCGCTTGCACTTCTGCGCCCAGGAAACCCAGC
GTCTGTACTTCGAGAAGCAGCTGGACCTAGCGGCCGAGTTCAAACTGCCT
CTCTTTCTGCACATGAGAAATGCTGCCGAGGACTTCATGGGCATCCTGGA
AAGAAATCGGAACAAGATCGAGGAGTGCGGCGGCGGAGTGGTGCACAGCT
TTACAGGAACTTTGGAGGAGGCCCAGCGCATCCTCGCCTTCGGCGGTCTC
TACATAGGCTTCAATGGGTGCTCCCTAAAGACGGATGAAAACGCAGAAGT
GGTGCGCAAGCTACCCAACGACAGGATAATGCTAGAAACCGACTGCCCGT
GGTGTGGTATTCGACCCTCGCATGCTGGACACAAGCACGTGACCACCAAG
TTTCCCACCGTCAAGAAGAAAGAGAAATGGACAGCTGAATCCCTAATAGA
CGGACGCTGTGAGCCTTGCCAAATCAGCCAAGTTTTGGAGTCTATTGCCG
GAATCAAACAAGAGCCTAAAGAACAGCTGGCTGCGTTATACTACCAAAAC
ACATTGGACTTGTTCTTCGGCACAGGAGAGAGTAAAGAAGCAAGCTTTCT
AGACCAT

BO04062.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3358-RG 876 CG3358-PG 1..873 17..889 4365 100 Plus
CG3358-RF 876 CG3358-PF 1..873 17..889 4365 100 Plus
CG3358-RE 876 CG3358-PE 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3358-RG 968 CG3358-RG 78..951 16..889 4370 100 Plus
CG3358-RF 1216 CG3358-RF 78..951 16..889 4370 100 Plus
CG3358-RE 950 CG3358-RE 60..933 16..889 4370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6923879..6924486 170..777 3040 100 Plus
2R 25286936 2R 6923505..6923659 16..170 775 100 Plus
2R 25286936 2R 6924551..6924664 776..889 570 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:17:13 has no hits.

BO04062.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:44 Download gff for BO04062.complete
Subject Subject Range Query Range Percent Splice Strand
CG3358-RC 45..921 16..893 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:01:10 Download gff for BO04062.complete
Subject Subject Range Query Range Percent Splice Strand
CG3358-RC 73..949 16..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:13 Download gff for BO04062.complete
Subject Subject Range Query Range Percent Splice Strand
CG3358-RE 66..933 22..891 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:44 Download gff for BO04062.complete
Subject Subject Range Query Range Percent Splice Strand
CG3358-RC 73..949 16..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:37 Download gff for BO04062.complete
Subject Subject Range Query Range Percent Splice Strand
CG3358-RE 66..933 22..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:37 Download gff for BO04062.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6923511..6923659 22..170 100 -> Plus
2R 6923880..6924486 171..777 100 -> Plus
2R 6924553..6924664 778..891 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:13 Download gff for BO04062.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2811016..2811164 22..170 100 -> Plus
arm_2R 2811385..2811991 171..777 100 -> Plus
arm_2R 2812058..2812169 778..891 98   Plus

BO04062.pep Sequence

Translation from 16 to 907

> BO04062.pep
MFQGCYGGTQKHEPDLHIVLERAWQQGLQKVIVTAGCLKDVDEALELASK
DERIYTTVGTHPTRCEEFVPDPEGYYDQLRSRIKANRTKVRAVGECGLDY
DRLHFCAQETQRLYFEKQLDLAAEFKLPLFLHMRNAAEDFMGILERNRNK
IEECGGGVVHSFTGTLEEAQRILAFGGLYIGFNGCSLKTDENAEVVRKLP
NDRIMLETDCPWCGIRPSHAGHKHVTTKFPTVKKKEKWTAESLIDGRCEP
CQISQVLESIAGIKQEPKEQLAALYYQNTLDLFFGTGESKEASFLDH

BO04062.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3358-PG 291 CG3358-PG 1..291 1..291 1559 100 Plus
CG3358-PF 291 CG3358-PF 1..291 1..291 1559 100 Plus
CG3358-PE 291 CG3358-PE 1..291 1..291 1559 100 Plus
CG3308-PA 319 CG3308-PA 47..316 10..283 272 31.4 Plus