Clone Sequence Records
BO04062.3prime Sequence
905 bp (819 high quality bases) assembled on 2005-12-01
> BO04062.3prime
ATGGTCTAGAAAGCTTGCTTCTTTACTCTCTCCTGTGCCGAAGAACAAGT
CCAATGTGTTTTGGTAGTATAACGCAGCCAGCTGTTCTTTAGGCTCTTGT
TTGATTCCGGCAATAGACTCCAAAACTTGGCTGATTTGGCAAGGCTCACA
GCGTCCGTCTATTAGGGATTCAGCTGTCCATTTCTCTTTCTTCTTGACGG
TGGGAAACTTGGTGGTCACGTGCTTGTGTCCAGCATGCGAGGGTCGAATA
CCACACCACGGGCAGTCGGTTTCTAGCATTATCCTGTCGTTGGGTAGCTT
GCGCACCACTTCTGCGTTTTCATCCGTCTTTAGGGAGCACCCATTGAAGC
CTATGTAGAGACCGCCGAAGGCGAGGATGCGCTGGGCCTCCTCCAAAGTT
CCTGTAAAGCTGTGCACCACTCCGCCGCCGCACTCCTCGATCTTGTTCCG
ATTTCTTTCCAGGATGCCCATGAAGTCCTCGGCAGCATTTCTCATGTGCA
GAAAGAGAGGCAGTTTGAACTCGGCCGCTAGGTCCAGCTGCTTCTCGAAG
TACAGACGCTGGGTTTCCTGGGCGCAGAAGTGCAAGCGATCGTAGTCTAG
ACCACATTCTCCTACGGCCCGCACCTTGGTTCGATTTGCCTTGATCCTGG
ATCGCAACTGGTCATAGTAGCCCTCTGGGTCTGGTACGAATTCCTCGCAC
CGGGTGGGATGTGTTCCCACTGTCGTGTAGATGCGCTCATCCTTGGAGGC
CAGTTCCAGTGCCTCATCCACATCCTTCAGGCAGCCGGCGGTAACGATGA
CTTTCTGCAGTCCCTGTTGCCACGCGCGCTCCAAGACGATGTGCAGGTCG
GGCTCGTGCTTCTGGGTTCCGCCGTAGCAGCCCTGGAACATGTCGACTGA
TAACT
BO04062.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3358-PB | 942 | CG3358-RB | 66..939 | 892..19 | 4370 | 100 | Minus |
CG3358-PA | 876 | CG3358-RA | 1..873 | 891..19 | 4365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3358-RG | 968 | CG3358-RG | 78..951 | 892..19 | 4370 | 100 | Minus |
CG3358-RF | 1216 | CG3358-RF | 78..951 | 892..19 | 4370 | 100 | Minus |
CG3358-RE | 950 | CG3358-RE | 60..933 | 892..19 | 4370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6923879..6924486 | 738..131 | 3040 | 100 | Minus |
2R | 25286936 | 2R | 6923505..6923659 | 892..738 | 775 | 100 | Minus |
2R | 25286936 | 2R | 6924551..6924664 | 132..19 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:00:29 has no hits.
BO04062.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:35 Download gff for
BO04062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-PB | 66..942 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:12 Download gff for
BO04062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-PB | 66..942 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:34:57 Download gff for
BO04062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RE | 60..936 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:31:43 Download gff for
BO04062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RE | 60..936 | 15..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:31:43 Download gff for
BO04062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6924553..6924667 | 15..130 | 98 | | Minus |
2R | 6923505..6923659 | 738..892 | 100 | -> | Minus |
2R | 6923880..6924486 | 131..737 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:34:57 Download gff for
BO04062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2811010..2811164 | 738..892 | 100 | -> | Minus |
arm_2R | 2811385..2811991 | 131..737 | 100 | -> | Minus |
arm_2R | 2812058..2812172 | 15..130 | 98 | | Minus |
BO04062.5prime Sequence
905 bp (876 high quality bases) assembled on 2006-02-03
> BO04062.5prime
GAAGTTATCAGTCGACATGTTCCAGGGCTGCTACGGCGGAACCCAGAAGC
ACGAGCCCGACCTGCACATCGTCTTGGAGCGCGCGTGGCAACAGGGACTG
CAGAAAGTCATCGTTACCGCCGGCTGCCTGAAGGATGTGGATGAGGCACT
GGAACTGGCCTCCAAGGATGAGCGCATCTACACGACAGTGGGAACACATC
CCACCCGGTGCGAGGAATTCGTACCAGACCCAGAGGGCTACTATGACCAG
TTGCGATCCAGGATCAAGGCAAATCGAACCAAGGTGCGGGCCGTAGGAGA
ATGTGGTCTAGACTACGATCGCTTGCACTTCTGCGCCCAGGAAACCCAGC
GTCTGTACTTCGAGAAGCAGCTGGACCTAGCGGCCGAGTTCAAACTGCCT
CTCTTTCTGCACATGAGAAATGCTGCCGAGGACTTCATGGGCATCCTGGA
AAGAAATCGGAACAAGATCGAGGAGTGCGGCGGCGGAGTGGTGCACAGCT
TTACAGGAACTTTGGAGGAGGCCCAGCGCATCCTCGCCTTCGGCGGTCTC
TACATAGGCTTCAATGGGTGCTCCCTAAAGACGGATGAAAACGCAGAAGT
GGTGCGCAAGCTACCCAACGACAGGATAATGCTAGAAACCGACTGCCCGT
GGTGTGGTATTCGACCCTCGCATGCTGGACACAAGCACGTGACCACCAAG
TTTCCCACCGTCAAGAAGAAAGAGAAATGGACAGCTGAATCCCTAATAGA
CGGACGCTGTGAGCCTTGCCAAATCAGCCAAGTTTTGGAGTCTATTGCCG
GAATCAAACAAGAGCCTAAAGAACAGCTGGCTGCGTTATACTACCAAAAC
ACATTGGACTTGTTCTTCGGCACAGGAGAGAGTAAAGAAGCAAGCTTTCT
AGACC
BO04062.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3358-PB | 942 | CG3358-RB | 66..939 | 16..889 | 4370 | 100 | Plus |
CG3358-PA | 876 | CG3358-RA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3358-RG | 968 | CG3358-RG | 78..951 | 16..889 | 4370 | 100 | Plus |
CG3358-RF | 1216 | CG3358-RF | 78..951 | 16..889 | 4370 | 100 | Plus |
CG3358-RE | 950 | CG3358-RE | 60..933 | 16..889 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:27:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6923879..6924486 | 170..777 | 3040 | 100 | Plus |
2R | 25286936 | 2R | 6923505..6923659 | 16..170 | 775 | 100 | Plus |
2R | 25286936 | 2R | 6924551..6924664 | 776..889 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:27:40 has no hits.
BO04062.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:36 Download gff for
BO04062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-PB | 66..942 | 16..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:14 Download gff for
BO04062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-PB | 66..942 | 16..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:02 Download gff for
BO04062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RE | 60..936 | 16..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:20 Download gff for
BO04062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RE | 60..936 | 16..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:20 Download gff for
BO04062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6923505..6923659 | 16..170 | 100 | -> | Plus |
2R | 6923880..6924486 | 171..777 | 100 | -> | Plus |
2R | 6924553..6924667 | 778..893 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:02 Download gff for
BO04062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2811010..2811164 | 16..170 | 100 | -> | Plus |
arm_2R | 2811385..2811991 | 171..777 | 100 | -> | Plus |
arm_2R | 2812058..2812172 | 778..893 | 98 | | Plus |
BO04062.complete Sequence
907 bp (907 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629621
> BO04062.complete
GAAGTTATCAGTCGACATGTTCCAGGGCTGCTACGGCGGAACCCAGAAGC
ACGAGCCCGACCTGCACATCGTCTTGGAGCGCGCGTGGCAACAGGGACTG
CAGAAAGTCATCGTTACCGCCGGCTGCCTGAAGGATGTGGATGAGGCACT
GGAACTGGCCTCCAAGGATGAGCGCATCTACACGACAGTGGGAACACATC
CCACCCGGTGCGAGGAATTCGTACCAGACCCAGAGGGCTACTATGACCAG
TTGCGATCCAGGATCAAGGCAAATCGAACCAAGGTGCGGGCCGTAGGAGA
ATGTGGTCTAGACTACGATCGCTTGCACTTCTGCGCCCAGGAAACCCAGC
GTCTGTACTTCGAGAAGCAGCTGGACCTAGCGGCCGAGTTCAAACTGCCT
CTCTTTCTGCACATGAGAAATGCTGCCGAGGACTTCATGGGCATCCTGGA
AAGAAATCGGAACAAGATCGAGGAGTGCGGCGGCGGAGTGGTGCACAGCT
TTACAGGAACTTTGGAGGAGGCCCAGCGCATCCTCGCCTTCGGCGGTCTC
TACATAGGCTTCAATGGGTGCTCCCTAAAGACGGATGAAAACGCAGAAGT
GGTGCGCAAGCTACCCAACGACAGGATAATGCTAGAAACCGACTGCCCGT
GGTGTGGTATTCGACCCTCGCATGCTGGACACAAGCACGTGACCACCAAG
TTTCCCACCGTCAAGAAGAAAGAGAAATGGACAGCTGAATCCCTAATAGA
CGGACGCTGTGAGCCTTGCCAAATCAGCCAAGTTTTGGAGTCTATTGCCG
GAATCAAACAAGAGCCTAAAGAACAGCTGGCTGCGTTATACTACCAAAAC
ACATTGGACTTGTTCTTCGGCACAGGAGAGAGTAAAGAAGCAAGCTTTCT
AGACCAT
BO04062.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3358-RG | 876 | CG3358-PG | 1..873 | 17..889 | 4365 | 100 | Plus |
CG3358-RF | 876 | CG3358-PF | 1..873 | 17..889 | 4365 | 100 | Plus |
CG3358-RE | 876 | CG3358-PE | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3358-RG | 968 | CG3358-RG | 78..951 | 16..889 | 4370 | 100 | Plus |
CG3358-RF | 1216 | CG3358-RF | 78..951 | 16..889 | 4370 | 100 | Plus |
CG3358-RE | 950 | CG3358-RE | 60..933 | 16..889 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:17:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6923879..6924486 | 170..777 | 3040 | 100 | Plus |
2R | 25286936 | 2R | 6923505..6923659 | 16..170 | 775 | 100 | Plus |
2R | 25286936 | 2R | 6924551..6924664 | 776..889 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:17:13 has no hits.
BO04062.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:44 Download gff for
BO04062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RC | 45..921 | 16..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:01:10 Download gff for
BO04062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RC | 73..949 | 16..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:13 Download gff for
BO04062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RE | 66..933 | 22..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:44 Download gff for
BO04062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RC | 73..949 | 16..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:37 Download gff for
BO04062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3358-RE | 66..933 | 22..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:37 Download gff for
BO04062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6923511..6923659 | 22..170 | 100 | -> | Plus |
2R | 6923880..6924486 | 171..777 | 100 | -> | Plus |
2R | 6924553..6924664 | 778..891 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:13 Download gff for
BO04062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2811016..2811164 | 22..170 | 100 | -> | Plus |
arm_2R | 2811385..2811991 | 171..777 | 100 | -> | Plus |
arm_2R | 2812058..2812169 | 778..891 | 98 | | Plus |
BO04062.pep Sequence
Translation from 16 to 907
> BO04062.pep
MFQGCYGGTQKHEPDLHIVLERAWQQGLQKVIVTAGCLKDVDEALELASK
DERIYTTVGTHPTRCEEFVPDPEGYYDQLRSRIKANRTKVRAVGECGLDY
DRLHFCAQETQRLYFEKQLDLAAEFKLPLFLHMRNAAEDFMGILERNRNK
IEECGGGVVHSFTGTLEEAQRILAFGGLYIGFNGCSLKTDENAEVVRKLP
NDRIMLETDCPWCGIRPSHAGHKHVTTKFPTVKKKEKWTAESLIDGRCEP
CQISQVLESIAGIKQEPKEQLAALYYQNTLDLFFGTGESKEASFLDH
BO04062.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3358-PG | 291 | CG3358-PG | 1..291 | 1..291 | 1559 | 100 | Plus |
CG3358-PF | 291 | CG3358-PF | 1..291 | 1..291 | 1559 | 100 | Plus |
CG3358-PE | 291 | CG3358-PE | 1..291 | 1..291 | 1559 | 100 | Plus |
CG3308-PA | 319 | CG3308-PA | 47..316 | 10..283 | 272 | 31.4 | Plus |