Clone Sequence Records
BO04064.3prime Sequence
695 bp (668 high quality bases) assembled on 2005-12-01
> BO04064.3prime
ATGGTCTAGAAAGCTTGCTTTGAGGTAGCTGTGCACCACATCGCGCAACT
CCTTGATGACCTGCGACTGATCGGAGGCGCCCACCACGGCGGTTCCCGAG
ACGATCATGTTGGCTCCGGCCTCGGCACAGCAGTGTATAGTCTTGGGTCC
CACACCTCCGTCCACCTCGATGTCCAGGTTGGGGTAGTTTTCGCGCAGCC
ACTTGACCTTCGGCATCATATCGGCCATGAAGGATTGTCCGCCAAAACCG
GGTTCCACGGTCATCACCAGCACAACGTCGGCAATGCTCAAGTACTTCTC
CAGATCTTGTACCTCGGTGCCCGGCTTAATGGCCAGGCCCACCTTCATGC
CCGACTCCTGCACTCGGCGACTGACTCTGACGACATCCTGCACCGGTTCG
ACGTGGAAGGTGTAGAGATTGACACCGGCATCGGCCATGGGCTCTATCCA
CTGCTCCGGATTCTGGACCATCATGTGCGTCTCGAAAAAGGCCGTCTTGA
TCTTGTTGCGCAAGCTCTTGACCATGGGGTGACCAAAGGTGAGATTCGGC
ACAAAAGTGCCGTCCATCACGTCCAGATGCAGGTAGTCCGCTCCATTGTC
CAGTAGTTTCTGTGACTCCGCCGCTAGGTTGGAGAGATCCGCATTGAGAA
TGCTGGGACCGATCTTGGCTTGGACGGGCATGTCGACTGATAACT
BO04064.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30499-PA | 666 | CG30499-RA | 1..663 | 681..19 | 3315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30499-RB | 891 | CG30499-RB | 99..761 | 681..19 | 3315 | 100 | Minus |
CG30499-RA | 1060 | CG30499-RA | 268..930 | 681..19 | 3315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7564564..7564859 | 19..314 | 1480 | 100 | Plus |
2R | 25286936 | 2R | 7565055..7565242 | 310..497 | 940 | 100 | Plus |
2R | 25286936 | 2R | 7565299..7565484 | 496..681 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:01:18 has no hits.
BO04064.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:38 Download gff for
BO04064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-PA | 1..666 | 18..681 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:16 Download gff for
BO04064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-PA | 1..666 | 18..681 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:36:45 Download gff for
BO04064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 263..938 | 11..688 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:52:19 Download gff for
BO04064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 263..938 | 11..688 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:52:19 Download gff for
BO04064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7565299..7565489 | 496..688 | 97 | | Plus |
2R | 7564556..7564857 | 11..312 | 98 | <- | Plus |
2R | 7565058..7565240 | 313..495 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:36:45 Download gff for
BO04064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3452061..3452362 | 11..312 | 98 | <- | Plus |
arm_2R | 3452563..3452745 | 313..495 | 100 | <- | Plus |
arm_2R | 3452804..3452994 | 496..688 | 97 | | Plus |
BO04064.5prime Sequence
695 bp (694 high quality bases) assembled on 2005-12-01
> BO04064.5prime
GAAGTTATCAGTCGACATGCCCGTCCAAGCCAAGATCGGTCCCAGCATTC
TCAATGCGGATCTCTCCAACCTAGCGGCGGAGTCACAGAAACTACTGGAC
AATGGAGCGGACTACCTGCATCTGGACGTGATGGACGGCACTTTTGTGCC
GAATCTCACCTTTGGTCACCCCATGGTCAAGAGCTTGCGCAACAAGATCA
AGACGGCCTTTTTCGAGACGCACATGATGGTCCAGAATCCGGAGCAGTGG
ATAGAGCCCATGGCCGATGCCGGTGTCAATCTCTACACCTTCCACGTCGA
ACCGGTGCAGGATGTCGTCAGAGTCAGTCGCCGAGTGCAGGAGTCGGGCA
TGAAGGTGGGCCTGGCCATTAAGCCGGGCACCGAGGTACAAGATCTGGAG
AAGTACTTGAGCATTGCCGACGTTGTGCTGGTGATGACCGTGGAACCCGG
TTTTGGCGGACAATCCTTCATGGCCGATATGATGCCGAAGGTCAAGTGGC
TGCGCGAAAACTACCCCAACCTGGACATCGAGGTGGACGGAGGTGTGGGA
CCCAAGACTATACACTGCTGTGCCGAGGCCGGAGCCAACATGATCGTCTC
GGGAACCGCCGTGGTGGGCGCCTCCGATCAGTCGCAGGTCATCAAGGAGT
TGCGCGATGTGGTGCACAGCTACCTCAAAGCAAGCTTTCTAGACC
BO04064.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30499-PA | 666 | CG30499-RA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30499-RB | 891 | CG30499-RB | 99..761 | 17..679 | 3315 | 100 | Plus |
CG30499-RA | 1060 | CG30499-RA | 268..930 | 17..679 | 3315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7564564..7564859 | 679..384 | 1480 | 100 | Minus |
2R | 25286936 | 2R | 7565055..7565242 | 388..201 | 940 | 100 | Minus |
2R | 25286936 | 2R | 7565299..7565484 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:04:59 has no hits.
BO04064.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:39 Download gff for
BO04064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-PA | 1..666 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:18 Download gff for
BO04064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-PA | 1..666 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:39:48 Download gff for
BO04064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 263..938 | 10..687 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:39:06 Download gff for
BO04064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 263..938 | 10..687 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:39:06 Download gff for
BO04064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7565299..7565489 | 10..202 | 97 | | Minus |
2R | 7564556..7564857 | 386..687 | 98 | <- | Minus |
2R | 7565058..7565240 | 203..385 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:39:48 Download gff for
BO04064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3452061..3452362 | 386..687 | 98 | <- | Minus |
arm_2R | 3452563..3452745 | 203..385 | 100 | <- | Minus |
arm_2R | 3452804..3452994 | 10..202 | 97 | | Minus |
BO04064.complete Sequence
697 bp (697 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629622
> BO04064.complete
GAAGTTATCAGTCGACATGCCCGTCCAAGCCAAGATCGGTCCCAGCATTC
TCAATGCGGATCTCTCCAACCTAGCGGCGGAGTCACAGAAACTACTGGAC
AATGGAGCGGACTACCTGCATCTGGACGTGATGGACGGCACTTTTGTGCC
GAATCTCACCTTTGGTCACCCCATGGTCAAGAGCTTGCGCAACAAGATCA
AGACGGCCTTTTTCGAGACGCACATGATGGTCCAGAATCCGGAGCAGTGG
ATAGAGCCCATGGCCGATGCCGGTGTCAATCTCTACACCTTCCACGTCGA
ACCGGTGCAGGATGTCGTCAGAGTCAGTCGCCGAGTGCAGGAGTCGGGCA
TGAAGGTGGGCCTGGCCATTAAGCCGGGCACCGAGGTACAAGATCTGGAG
AAGTACTTGAGCATTGCCGACGTTGTGCTGGTGATGACCGTGGAACCCGG
TTTTGGCGGACAATCCTTCATGGCCGATATGATGCCGAAGGTCAAGTGGC
TGCGCGAAAACTACCCCAACCTGGACATCGAGGTGGACGGAGGTGTGGGA
CCCAAGACTATACACTGCTGTGCCGAGGCCGGAGCCAACATGATCGTCTC
GGGAACCGCCGTGGTGGGCGCCTCCGATCAGTCGCAGGTCATCAAGGAGT
TGCGCGATGTGGTGCACAGCTACCTCAAAGCAAGCTTTCTAGACCAT
BO04064.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30499-RB | 666 | CG30499-PB | 1..663 | 17..679 | 3315 | 100 | Plus |
CG30499-RA | 666 | CG30499-PA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30499-RB | 891 | CG30499-RB | 99..761 | 17..679 | 3315 | 100 | Plus |
CG30499-RA | 1060 | CG30499-RA | 268..930 | 17..679 | 3315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7564564..7564859 | 679..384 | 1480 | 100 | Minus |
2R | 25286936 | 2R | 7565055..7565242 | 388..201 | 940 | 100 | Minus |
2R | 25286936 | 2R | 7565299..7565484 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:47:40 has no hits.
BO04064.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:09 Download gff for
BO04064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 1..666 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:00 Download gff for
BO04064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 261..936 | 10..687 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:06 Download gff for
BO04064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 268..930 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:10 Download gff for
BO04064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 261..936 | 10..687 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:08 Download gff for
BO04064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30499-RA | 268..930 | 17..681 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:08 Download gff for
BO04064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7564562..7564857 | 386..681 | 99 | <- | Minus |
2R | 7565058..7565240 | 203..385 | 100 | <- | Minus |
2R | 7565299..7565484 | 17..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:06 Download gff for
BO04064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3452067..3452362 | 386..681 | 99 | <- | Minus |
arm_2R | 3452563..3452745 | 203..385 | 100 | <- | Minus |
arm_2R | 3452804..3452989 | 17..202 | 100 | | Minus |
BO04064.pep Sequence
Translation from 16 to 697
> BO04064.pep
MPVQAKIGPSILNADLSNLAAESQKLLDNGADYLHLDVMDGTFVPNLTFG
HPMVKSLRNKIKTAFFETHMMVQNPEQWIEPMADAGVNLYTFHVEPVQDV
VRVSRRVQESGMKVGLAIKPGTEVQDLEKYLSIADVVLVMTVEPGFGGQS
FMADMMPKVKWLRENYPNLDIEVDGGVGPKTIHCCAEAGANMIVSGTAVV
GASDQSQVIKELRDVVHSYLKASFLDH
BO04064.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30499-PB | 221 | CG30499-PB | 1..221 | 1..221 | 1142 | 100 | Plus |
CG30499-PA | 221 | CG30499-PA | 1..221 | 1..221 | 1142 | 100 | Plus |