Clone BO04064 Report

Search the DGRC for BO04064

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG30499-RA
Protein status:BO04064.pep: validated full length
Sequenced Size:697

Clone Sequence Records

BO04064.3prime Sequence

695 bp (668 high quality bases) assembled on 2005-12-01

> BO04064.3prime
ATGGTCTAGAAAGCTTGCTTTGAGGTAGCTGTGCACCACATCGCGCAACT
CCTTGATGACCTGCGACTGATCGGAGGCGCCCACCACGGCGGTTCCCGAG
ACGATCATGTTGGCTCCGGCCTCGGCACAGCAGTGTATAGTCTTGGGTCC
CACACCTCCGTCCACCTCGATGTCCAGGTTGGGGTAGTTTTCGCGCAGCC
ACTTGACCTTCGGCATCATATCGGCCATGAAGGATTGTCCGCCAAAACCG
GGTTCCACGGTCATCACCAGCACAACGTCGGCAATGCTCAAGTACTTCTC
CAGATCTTGTACCTCGGTGCCCGGCTTAATGGCCAGGCCCACCTTCATGC
CCGACTCCTGCACTCGGCGACTGACTCTGACGACATCCTGCACCGGTTCG
ACGTGGAAGGTGTAGAGATTGACACCGGCATCGGCCATGGGCTCTATCCA
CTGCTCCGGATTCTGGACCATCATGTGCGTCTCGAAAAAGGCCGTCTTGA
TCTTGTTGCGCAAGCTCTTGACCATGGGGTGACCAAAGGTGAGATTCGGC
ACAAAAGTGCCGTCCATCACGTCCAGATGCAGGTAGTCCGCTCCATTGTC
CAGTAGTTTCTGTGACTCCGCCGCTAGGTTGGAGAGATCCGCATTGAGAA
TGCTGGGACCGATCTTGGCTTGGACGGGCATGTCGACTGATAACT

BO04064.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG30499-PA 666 CG30499-RA 1..663 681..19 3315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG30499-RB 891 CG30499-RB 99..761 681..19 3315 100 Minus
CG30499-RA 1060 CG30499-RA 268..930 681..19 3315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7564564..7564859 19..314 1480 100 Plus
2R 25286936 2R 7565055..7565242 310..497 940 100 Plus
2R 25286936 2R 7565299..7565484 496..681 930 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:01:18 has no hits.

BO04064.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:38 Download gff for BO04064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30499-PA 1..666 18..681 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:16 Download gff for BO04064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30499-PA 1..666 18..681 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:36:45 Download gff for BO04064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 263..938 11..688 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:52:19 Download gff for BO04064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 263..938 11..688 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:52:19 Download gff for BO04064.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7565299..7565489 496..688 97   Plus
2R 7564556..7564857 11..312 98 <- Plus
2R 7565058..7565240 313..495 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:36:45 Download gff for BO04064.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3452061..3452362 11..312 98 <- Plus
arm_2R 3452563..3452745 313..495 100 <- Plus
arm_2R 3452804..3452994 496..688 97   Plus

BO04064.5prime Sequence

695 bp (694 high quality bases) assembled on 2005-12-01

> BO04064.5prime
GAAGTTATCAGTCGACATGCCCGTCCAAGCCAAGATCGGTCCCAGCATTC
TCAATGCGGATCTCTCCAACCTAGCGGCGGAGTCACAGAAACTACTGGAC
AATGGAGCGGACTACCTGCATCTGGACGTGATGGACGGCACTTTTGTGCC
GAATCTCACCTTTGGTCACCCCATGGTCAAGAGCTTGCGCAACAAGATCA
AGACGGCCTTTTTCGAGACGCACATGATGGTCCAGAATCCGGAGCAGTGG
ATAGAGCCCATGGCCGATGCCGGTGTCAATCTCTACACCTTCCACGTCGA
ACCGGTGCAGGATGTCGTCAGAGTCAGTCGCCGAGTGCAGGAGTCGGGCA
TGAAGGTGGGCCTGGCCATTAAGCCGGGCACCGAGGTACAAGATCTGGAG
AAGTACTTGAGCATTGCCGACGTTGTGCTGGTGATGACCGTGGAACCCGG
TTTTGGCGGACAATCCTTCATGGCCGATATGATGCCGAAGGTCAAGTGGC
TGCGCGAAAACTACCCCAACCTGGACATCGAGGTGGACGGAGGTGTGGGA
CCCAAGACTATACACTGCTGTGCCGAGGCCGGAGCCAACATGATCGTCTC
GGGAACCGCCGTGGTGGGCGCCTCCGATCAGTCGCAGGTCATCAAGGAGT
TGCGCGATGTGGTGCACAGCTACCTCAAAGCAAGCTTTCTAGACC

BO04064.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG30499-PA 666 CG30499-RA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG30499-RB 891 CG30499-RB 99..761 17..679 3315 100 Plus
CG30499-RA 1060 CG30499-RA 268..930 17..679 3315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7564564..7564859 679..384 1480 100 Minus
2R 25286936 2R 7565055..7565242 388..201 940 100 Minus
2R 25286936 2R 7565299..7565484 202..17 930 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:04:59 has no hits.

BO04064.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:39 Download gff for BO04064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30499-PA 1..666 17..680 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:18 Download gff for BO04064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30499-PA 1..666 17..680 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:39:48 Download gff for BO04064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 263..938 10..687 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:39:06 Download gff for BO04064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 263..938 10..687 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:39:06 Download gff for BO04064.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7565299..7565489 10..202 97   Minus
2R 7564556..7564857 386..687 98 <- Minus
2R 7565058..7565240 203..385 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:39:48 Download gff for BO04064.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3452061..3452362 386..687 98 <- Minus
arm_2R 3452563..3452745 203..385 100 <- Minus
arm_2R 3452804..3452994 10..202 97   Minus

BO04064.complete Sequence

697 bp (697 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629622

> BO04064.complete
GAAGTTATCAGTCGACATGCCCGTCCAAGCCAAGATCGGTCCCAGCATTC
TCAATGCGGATCTCTCCAACCTAGCGGCGGAGTCACAGAAACTACTGGAC
AATGGAGCGGACTACCTGCATCTGGACGTGATGGACGGCACTTTTGTGCC
GAATCTCACCTTTGGTCACCCCATGGTCAAGAGCTTGCGCAACAAGATCA
AGACGGCCTTTTTCGAGACGCACATGATGGTCCAGAATCCGGAGCAGTGG
ATAGAGCCCATGGCCGATGCCGGTGTCAATCTCTACACCTTCCACGTCGA
ACCGGTGCAGGATGTCGTCAGAGTCAGTCGCCGAGTGCAGGAGTCGGGCA
TGAAGGTGGGCCTGGCCATTAAGCCGGGCACCGAGGTACAAGATCTGGAG
AAGTACTTGAGCATTGCCGACGTTGTGCTGGTGATGACCGTGGAACCCGG
TTTTGGCGGACAATCCTTCATGGCCGATATGATGCCGAAGGTCAAGTGGC
TGCGCGAAAACTACCCCAACCTGGACATCGAGGTGGACGGAGGTGTGGGA
CCCAAGACTATACACTGCTGTGCCGAGGCCGGAGCCAACATGATCGTCTC
GGGAACCGCCGTGGTGGGCGCCTCCGATCAGTCGCAGGTCATCAAGGAGT
TGCGCGATGTGGTGCACAGCTACCTCAAAGCAAGCTTTCTAGACCAT

BO04064.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG30499-RB 666 CG30499-PB 1..663 17..679 3315 100 Plus
CG30499-RA 666 CG30499-PA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG30499-RB 891 CG30499-RB 99..761 17..679 3315 100 Plus
CG30499-RA 1060 CG30499-RA 268..930 17..679 3315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7564564..7564859 679..384 1480 100 Minus
2R 25286936 2R 7565055..7565242 388..201 940 100 Minus
2R 25286936 2R 7565299..7565484 202..17 930 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:47:40 has no hits.

BO04064.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:09 Download gff for BO04064.complete
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 1..666 17..680 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:00 Download gff for BO04064.complete
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 261..936 10..687 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:06 Download gff for BO04064.complete
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 268..930 17..681 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:10 Download gff for BO04064.complete
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 261..936 10..687 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:08 Download gff for BO04064.complete
Subject Subject Range Query Range Percent Splice Strand
CG30499-RA 268..930 17..681 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:08 Download gff for BO04064.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7564562..7564857 386..681 99 <- Minus
2R 7565058..7565240 203..385 100 <- Minus
2R 7565299..7565484 17..202 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:06 Download gff for BO04064.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3452067..3452362 386..681 99 <- Minus
arm_2R 3452563..3452745 203..385 100 <- Minus
arm_2R 3452804..3452989 17..202 100   Minus

BO04064.pep Sequence

Translation from 16 to 697

> BO04064.pep
MPVQAKIGPSILNADLSNLAAESQKLLDNGADYLHLDVMDGTFVPNLTFG
HPMVKSLRNKIKTAFFETHMMVQNPEQWIEPMADAGVNLYTFHVEPVQDV
VRVSRRVQESGMKVGLAIKPGTEVQDLEKYLSIADVVLVMTVEPGFGGQS
FMADMMPKVKWLRENYPNLDIEVDGGVGPKTIHCCAEAGANMIVSGTAVV
GASDQSQVIKELRDVVHSYLKASFLDH

BO04064.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG30499-PB 221 CG30499-PB 1..221 1..221 1142 100 Plus
CG30499-PA 221 CG30499-PA 1..221 1..221 1142 100 Plus