Clone BO04065 Report

Search the DGRC for BO04065

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptLhr-RA
Protein status:BO04065.pep: validated full length
Sequenced Size:1036

Clone Sequence Records

BO04065.3prime Sequence

823 bp (806 high quality bases) assembled on 2005-12-01

> BO04065.3prime
ATGGTCTAGAAAGCTTGCTGTTCTCAGCGTAGGCCGCCTTGAGCGCCGTA
TTCTAGCTAAGGGTAAATAATCATCAATTTCCACTCGCTTCAGCCGGATG
CGACACCTTTTAATGTAGTATTTCGCGCTTTTAAGAGGAACGAAGCGTGG
TGTTTCTATCGGTCGTTCGTCACATTTTGTTGTATCTTTAATTTTAGGTT
CAATAGCTGTTTCTATTTTGATTTTGACATCATTTGATCCTTTGCAAGCA
TTATTATATCTGATTCTTTTATTGGCACTTGCGACATTGGGTCTTATTTT
GTGTGGGCTAATGCCGAATCTGTCCATGGCCGGACTGAGTAAATTGTCTG
CTGGGAGCTCTTTCACCCGTATCGCTTTAAGAAATTCGTCGTATTCGCTC
TGAACCGTCTCCAGGTCCTTAGGACCCAGCTTTCGAGTAGCTTTCTCTTG
GCGCTCTTGCTCCAGGATGAGGGCGAGGACCTCCACTTCTAAATGCCGGC
GTTCCGCTTGCGCCATAGATTTCACGAAAGGCAACTGACTGAGAAGAAAC
TCCTGACACTTGGTTTTCGGCACATCCGCCGGATTCGGGGCTTGCATGCG
AATGTGCACATCGTGCATCACCCGCCACAGAGGTTCAGGGATTTGCCCTT
TGGAACCGGCCAAGGCTCTGACCAGCGGGCGCAGCTTCACCCAACGCAGC
TTCAGTTCACTTACGGAGAACGGAGTACTCAGCTCAACGTGCTCGTAGCT
TTGGTTAAAGGACTTGGCCAGCTGATCCCAACCCCAGGAGTCGTAGTCAA
CGTCCATTTTGGGCTCCACCTGC

BO04065.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG18468-PA 1005 CG18468-RA 198..1002 823..19 4025 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Lhr-RA 1188 CG18468-RA 326..1130 823..19 4025 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17431357..17432161 823..19 4025 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:39:14 has no hits.

BO04065.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:40 Download gff for BO04065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18468-PA 198..1005 16..823 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:19 Download gff for BO04065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18468-PA 198..1005 16..823 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:25 Download gff for BO04065.3prime
Subject Subject Range Query Range Percent Splice Strand
Lhr-RA 326..1139 8..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:44 Download gff for BO04065.3prime
Subject Subject Range Query Range Percent Splice Strand
Lhr-RA 326..1139 8..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:44 Download gff for BO04065.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17431357..17432170 8..823 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:25 Download gff for BO04065.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13318862..13319675 8..823 99   Minus

BO04065.5prime Sequence

846 bp (774 high quality bases) assembled on 2005-12-01

> BO04065.5prime
GAAGTTATCAGTCGACATGTGTTGTAGAACGTTGGAGAAACACAGTGCGA
AAAATATTAAAATGAGTACCGACAGCGCCGAGGAAACGGTGATCCATTCC
ACTGTTCCCCATTTGGAGATTAACATATCAAACACCAACATCAGCGGCCA
GATTGTTTTAAACGACTTGCTGCTCATGGAGATGCTCGCCCGGTATCCCT
TCCTTATCATCCCGCAGGTGGAGCCCAAAATGGACGTTGACTACGACTCC
TGGGGTTGGGATCAGCTGGCCAAGTCCTTTAACCAAAGCTACGAGCACGT
TGAGCTGAGTACTCCGTTCTCCGTAAGTGAACTGAAGCTGCGTTGGGTGA
AGCTGCGCCCGCTGGTCAGAGCCTTGGCCGGTTCCAAAGGGCAAATCCCT
GAACCTCTGTGGCGGGTGATGCACGATGTGCACATTCGCATGCAAGCCCC
GAATCCGGCGGATGTGCCGAAAACCAAGTGTCAGGAGTTTCTTCTCAGTC
AGTTGCCTTTCGTGAAATCTATGGCGCAAGCGGAACGCCGGCATTTAGAA
GTGGAGGTCCTCGCCCTCATCCTGGAGCAAGAGCGCCAAGAGAAAGCTAC
TCGAAAGCTGGGTCCTAAGGACCTGGAGACGGTTCAGAGCGAATACGACG
AATTTCTTAAAGCGATACGGGTGAAAGAGCTCCCAGCAGACAATTTACTC
AGTCCGGCCATGGACAGATTCGGCATTAGCCCACACAAAATAAGACCCAA
TGTCGCAAGTGCCAATAAAAGAATCAGATATAATAATGCTTGCAAAGGAT
CAAATGATGTCAAAATCAAAATAGAAACAGCTATTGAACCTAAAAT

BO04065.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG18468-PA 1005 CG18468-RA 1..830 17..846 4150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
Lhr-RA 1188 CG18468-RA 129..958 17..846 4150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17431160..17431989 17..846 4150 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:49:36 has no hits.

BO04065.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:41 Download gff for BO04065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18468-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:21 Download gff for BO04065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18468-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:51 Download gff for BO04065.5prime
Subject Subject Range Query Range Percent Splice Strand
Lhr-RA 124..958 9..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:26:01 Download gff for BO04065.5prime
Subject Subject Range Query Range Percent Splice Strand
Lhr-RA 124..958 9..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:26:01 Download gff for BO04065.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17431155..17431989 9..846 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:51 Download gff for BO04065.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13318660..13319494 9..846 99   Plus

BO04065.complete Sequence

1036 bp (1036 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629623

> BO04065.complete
GAAGTTATCAGTCGACATGTGTTGTAGAACGTTGGAGAAACACAGTGCGA
AAAATATTAAAATGAGTACCGACAGCGCCGAGGAAACGGTGATCCATTCC
ACTGTTCCCCATTTGGAGATTAACATATCAAACACCAACATCAGCGGCCA
GATTGTTTTAAACGACTTGCTGCTCATGGAGATGCTCGCCCGGTATCCCT
TCCTTATCATCCCGCAGGTGGAGCCCAAAATGGACGTTGACTACGACTCC
TGGGGTTGGGATCAGCTGGCCAAGTCCTTTAACCAAAGCTACGAGCACGT
TGAGCTGAGTACTCCGTTCTCCGTAAGTGAACTGAAGCTGCGTTGGGTGA
AGCTGCGCCCGCTGGTCAGAGCCTTGGCCGGTTCCAAAGGGCAAATCCCT
GAACCTCTGTGGCGGGTGATGCACGATGTGCACATTCGCATGCAAGCCCC
GAATCCGGCGGATGTGCCGAAAACCAAGTGTCAGGAGTTTCTTCTCAGTC
AGTTGCCTTTCGTGAAATCTATGGCGCAAGCGGAACGCCGGCATTTAGAA
GTGGAGGTCCTCGCCCTCATCCTGGAGCAAGAGCGCCAAGAGAAAGCTAC
TCGAAAGCTGGGTCCTAAGGACCTGGAGACGGTTCAGAGCGAATACGACG
AATTTCTTAAAGCGATACGGGTGAAAGAGCTCCCAGCAGACAATTTACTC
AGTCCGGCCATGGACAGATTCGGCATTAGCCCACACAAAATAAGACCCAA
TGTCGCAAGTGCCAATAAAAGAATCAGATATAATAATGCTTGCAAAGGAT
CAAATGATGTCAAAATCAAAATAGAAACAGCTATTGAACCTAAAATTAAA
GATACAACAAAATGTGACGAACGACCGATAGAAACACCACGCTTCGTTCC
TCTTAAAAGCGCGAAATACTACATTAAAAGGTGTCGCATCCGGCTGAAGC
GAGTGGAAATTGATGATTATTTACCCTTAGCTAGAATACGGCGCTCAAGG
CGGCCTACGCTGAGAACAGCAAGCTTTCTAGACCAT

BO04065.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Lhr-RA 1005 CG18468-PA 1..1002 17..1018 5010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Lhr-RA 1188 CG18468-RA 129..1130 17..1018 5010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17431160..17432161 17..1018 5010 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:39:08 has no hits.

BO04065.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:24 Download gff for BO04065.complete
Subject Subject Range Query Range Percent Splice Strand
Lhr-RA 1..1005 17..1021 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:44 Download gff for BO04065.complete
Subject Subject Range Query Range Percent Splice Strand
Lhr-RA 105..1120 9..1029 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:33 Download gff for BO04065.complete
Subject Subject Range Query Range Percent Splice Strand
Lhr-RA 129..1130 17..1020 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:24 Download gff for BO04065.complete
Subject Subject Range Query Range Percent Splice Strand
Lhr-RA 105..1120 9..1029 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:27 Download gff for BO04065.complete
Subject Subject Range Query Range Percent Splice Strand
Lhr-RA 129..1130 17..1020 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:27 Download gff for BO04065.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17431160..17432161 17..1020 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:33 Download gff for BO04065.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13318665..13319666 17..1020 99   Plus

BO04065.pep Sequence

Translation from 16 to 1036

> BO04065.pep
MCCRTLEKHSAKNIKMSTDSAEETVIHSTVPHLEINISNTNISGQIVLND
LLLMEMLARYPFLIIPQVEPKMDVDYDSWGWDQLAKSFNQSYEHVELSTP
FSVSELKLRWVKLRPLVRALAGSKGQIPEPLWRVMHDVHIRMQAPNPADV
PKTKCQEFLLSQLPFVKSMAQAERRHLEVEVLALILEQERQEKATRKLGP
KDLETVQSEYDEFLKAIRVKELPADNLLSPAMDRFGISPHKIRPNVASAN
KRIRYNNACKGSNDVKIKIETAIEPKIKDTTKCDERPIETPRFVPLKSAK
YYIKRCRIRLKRVEIDDYLPLARIRRSRRPTLRTASFLDH

BO04065.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Lhr-PA 334 CG18468-PA 1..334 1..334 1727 100 Plus