Clone Sequence Records
BO04065.3prime Sequence
823 bp (806 high quality bases) assembled on 2005-12-01
> BO04065.3prime
ATGGTCTAGAAAGCTTGCTGTTCTCAGCGTAGGCCGCCTTGAGCGCCGTA
TTCTAGCTAAGGGTAAATAATCATCAATTTCCACTCGCTTCAGCCGGATG
CGACACCTTTTAATGTAGTATTTCGCGCTTTTAAGAGGAACGAAGCGTGG
TGTTTCTATCGGTCGTTCGTCACATTTTGTTGTATCTTTAATTTTAGGTT
CAATAGCTGTTTCTATTTTGATTTTGACATCATTTGATCCTTTGCAAGCA
TTATTATATCTGATTCTTTTATTGGCACTTGCGACATTGGGTCTTATTTT
GTGTGGGCTAATGCCGAATCTGTCCATGGCCGGACTGAGTAAATTGTCTG
CTGGGAGCTCTTTCACCCGTATCGCTTTAAGAAATTCGTCGTATTCGCTC
TGAACCGTCTCCAGGTCCTTAGGACCCAGCTTTCGAGTAGCTTTCTCTTG
GCGCTCTTGCTCCAGGATGAGGGCGAGGACCTCCACTTCTAAATGCCGGC
GTTCCGCTTGCGCCATAGATTTCACGAAAGGCAACTGACTGAGAAGAAAC
TCCTGACACTTGGTTTTCGGCACATCCGCCGGATTCGGGGCTTGCATGCG
AATGTGCACATCGTGCATCACCCGCCACAGAGGTTCAGGGATTTGCCCTT
TGGAACCGGCCAAGGCTCTGACCAGCGGGCGCAGCTTCACCCAACGCAGC
TTCAGTTCACTTACGGAGAACGGAGTACTCAGCTCAACGTGCTCGTAGCT
TTGGTTAAAGGACTTGGCCAGCTGATCCCAACCCCAGGAGTCGTAGTCAA
CGTCCATTTTGGGCTCCACCTGC
BO04065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18468-PA | 1005 | CG18468-RA | 198..1002 | 823..19 | 4025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lhr-RA | 1188 | CG18468-RA | 326..1130 | 823..19 | 4025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17431357..17432161 | 823..19 | 4025 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:39:14 has no hits.
BO04065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:40 Download gff for
BO04065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18468-PA | 198..1005 | 16..823 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:19 Download gff for
BO04065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18468-PA | 198..1005 | 16..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:25 Download gff for
BO04065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lhr-RA | 326..1139 | 8..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:44 Download gff for
BO04065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lhr-RA | 326..1139 | 8..823 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:44 Download gff for
BO04065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17431357..17432170 | 8..823 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:25 Download gff for
BO04065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13318862..13319675 | 8..823 | 99 | | Minus |
BO04065.5prime Sequence
846 bp (774 high quality bases) assembled on 2005-12-01
> BO04065.5prime
GAAGTTATCAGTCGACATGTGTTGTAGAACGTTGGAGAAACACAGTGCGA
AAAATATTAAAATGAGTACCGACAGCGCCGAGGAAACGGTGATCCATTCC
ACTGTTCCCCATTTGGAGATTAACATATCAAACACCAACATCAGCGGCCA
GATTGTTTTAAACGACTTGCTGCTCATGGAGATGCTCGCCCGGTATCCCT
TCCTTATCATCCCGCAGGTGGAGCCCAAAATGGACGTTGACTACGACTCC
TGGGGTTGGGATCAGCTGGCCAAGTCCTTTAACCAAAGCTACGAGCACGT
TGAGCTGAGTACTCCGTTCTCCGTAAGTGAACTGAAGCTGCGTTGGGTGA
AGCTGCGCCCGCTGGTCAGAGCCTTGGCCGGTTCCAAAGGGCAAATCCCT
GAACCTCTGTGGCGGGTGATGCACGATGTGCACATTCGCATGCAAGCCCC
GAATCCGGCGGATGTGCCGAAAACCAAGTGTCAGGAGTTTCTTCTCAGTC
AGTTGCCTTTCGTGAAATCTATGGCGCAAGCGGAACGCCGGCATTTAGAA
GTGGAGGTCCTCGCCCTCATCCTGGAGCAAGAGCGCCAAGAGAAAGCTAC
TCGAAAGCTGGGTCCTAAGGACCTGGAGACGGTTCAGAGCGAATACGACG
AATTTCTTAAAGCGATACGGGTGAAAGAGCTCCCAGCAGACAATTTACTC
AGTCCGGCCATGGACAGATTCGGCATTAGCCCACACAAAATAAGACCCAA
TGTCGCAAGTGCCAATAAAAGAATCAGATATAATAATGCTTGCAAAGGAT
CAAATGATGTCAAAATCAAAATAGAAACAGCTATTGAACCTAAAAT
BO04065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18468-PA | 1005 | CG18468-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lhr-RA | 1188 | CG18468-RA | 129..958 | 17..846 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17431160..17431989 | 17..846 | 4150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:49:36 has no hits.
BO04065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:41 Download gff for
BO04065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18468-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:21 Download gff for
BO04065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18468-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:51 Download gff for
BO04065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lhr-RA | 124..958 | 9..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:26:01 Download gff for
BO04065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lhr-RA | 124..958 | 9..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:26:01 Download gff for
BO04065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17431155..17431989 | 9..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:51 Download gff for
BO04065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13318660..13319494 | 9..846 | 99 | | Plus |
BO04065.complete Sequence
1036 bp (1036 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629623
> BO04065.complete
GAAGTTATCAGTCGACATGTGTTGTAGAACGTTGGAGAAACACAGTGCGA
AAAATATTAAAATGAGTACCGACAGCGCCGAGGAAACGGTGATCCATTCC
ACTGTTCCCCATTTGGAGATTAACATATCAAACACCAACATCAGCGGCCA
GATTGTTTTAAACGACTTGCTGCTCATGGAGATGCTCGCCCGGTATCCCT
TCCTTATCATCCCGCAGGTGGAGCCCAAAATGGACGTTGACTACGACTCC
TGGGGTTGGGATCAGCTGGCCAAGTCCTTTAACCAAAGCTACGAGCACGT
TGAGCTGAGTACTCCGTTCTCCGTAAGTGAACTGAAGCTGCGTTGGGTGA
AGCTGCGCCCGCTGGTCAGAGCCTTGGCCGGTTCCAAAGGGCAAATCCCT
GAACCTCTGTGGCGGGTGATGCACGATGTGCACATTCGCATGCAAGCCCC
GAATCCGGCGGATGTGCCGAAAACCAAGTGTCAGGAGTTTCTTCTCAGTC
AGTTGCCTTTCGTGAAATCTATGGCGCAAGCGGAACGCCGGCATTTAGAA
GTGGAGGTCCTCGCCCTCATCCTGGAGCAAGAGCGCCAAGAGAAAGCTAC
TCGAAAGCTGGGTCCTAAGGACCTGGAGACGGTTCAGAGCGAATACGACG
AATTTCTTAAAGCGATACGGGTGAAAGAGCTCCCAGCAGACAATTTACTC
AGTCCGGCCATGGACAGATTCGGCATTAGCCCACACAAAATAAGACCCAA
TGTCGCAAGTGCCAATAAAAGAATCAGATATAATAATGCTTGCAAAGGAT
CAAATGATGTCAAAATCAAAATAGAAACAGCTATTGAACCTAAAATTAAA
GATACAACAAAATGTGACGAACGACCGATAGAAACACCACGCTTCGTTCC
TCTTAAAAGCGCGAAATACTACATTAAAAGGTGTCGCATCCGGCTGAAGC
GAGTGGAAATTGATGATTATTTACCCTTAGCTAGAATACGGCGCTCAAGG
CGGCCTACGCTGAGAACAGCAAGCTTTCTAGACCAT
BO04065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lhr-RA | 1005 | CG18468-PA | 1..1002 | 17..1018 | 5010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lhr-RA | 1188 | CG18468-RA | 129..1130 | 17..1018 | 5010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17431160..17432161 | 17..1018 | 5010 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:39:08 has no hits.
BO04065.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:24 Download gff for
BO04065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lhr-RA | 1..1005 | 17..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:44 Download gff for
BO04065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lhr-RA | 105..1120 | 9..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:33 Download gff for
BO04065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lhr-RA | 129..1130 | 17..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:24 Download gff for
BO04065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lhr-RA | 105..1120 | 9..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:27 Download gff for
BO04065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lhr-RA | 129..1130 | 17..1020 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:27 Download gff for
BO04065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17431160..17432161 | 17..1020 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:33 Download gff for
BO04065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13318665..13319666 | 17..1020 | 99 | | Plus |
BO04065.pep Sequence
Translation from 16 to 1036
> BO04065.pep
MCCRTLEKHSAKNIKMSTDSAEETVIHSTVPHLEINISNTNISGQIVLND
LLLMEMLARYPFLIIPQVEPKMDVDYDSWGWDQLAKSFNQSYEHVELSTP
FSVSELKLRWVKLRPLVRALAGSKGQIPEPLWRVMHDVHIRMQAPNPADV
PKTKCQEFLLSQLPFVKSMAQAERRHLEVEVLALILEQERQEKATRKLGP
KDLETVQSEYDEFLKAIRVKELPADNLLSPAMDRFGISPHKIRPNVASAN
KRIRYNNACKGSNDVKIKIETAIEPKIKDTTKCDERPIETPRFVPLKSAK
YYIKRCRIRLKRVEIDDYLPLARIRRSRRPTLRTASFLDH
BO04065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lhr-PA | 334 | CG18468-PA | 1..334 | 1..334 | 1727 | 100 | Plus |