Clone Sequence Records
BO04067.3prime Sequence
704 bp (703 high quality bases) assembled on 2005-12-01
> BO04067.3prime
ATGGTCTAGAAAGCTTGCAAGCACAAGAGGCACGGCCTCTGCCACCGGCT
GGTTGATCTCCTGGTGGCGTTGCAGTAATCCCAAGCACTGGTGCAGGCAC
TGGGTGCTGGCCGTGGAGATCGCCTTGAGCAAAAGAAGATCGGGATCCGT
TGGCGAGAAGGAAGCGCAGTCGATGCTCTCGATGGCCCTGGCCAGAGAAG
CGTTGCATTGTTCCGTGAGAAACAGAGCTTGGCGCGCTGAAACCATGGCA
TCGGAGGCGGCAAGCAATTCCCGCGGAGGAAGCGGCGACGAGTTGCTGAT
GTCCATCGCCTTCATGTGACTCTCGACCACCGCCCGCAGGCCATCCACCC
ACTCCTGACGGGCCCTGGCATCGTTGGCCCTCAGCTTTACCGTATCGCCG
GAGGCGCAGGCGATGGCGAACGTCCTAGAGTCCTCGTCACTCGGGTACAC
CACTGCGCCGGCCAGCTGCACCTGGCCCCTGGGAGCACTGGCCAGGACGT
GGGGCGAGGGCGCGATGTCGTCGCCCACCGTCGACGAGTCGCACAGGTAG
TAGCTCAGCGATCCTGTCTTGGCGTCCACCGTAAACCAACGGTACTGCCA
TCCCTTCATCACATTGGTGTATTTGCTGAGCTGACCGCAGAGTTTCAGTT
TGGCCGATTCACGAATGATCCTGTTCAAGTTGCTCTCCATGTCGACTGAT
AACT
BO04067.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9205-PA | 675 | CG9205-RA | 1..672 | 690..19 | 3360 | 100 | Minus |
CG9205-PB | 675 | CG9205-RB | 1..672 | 690..19 | 3360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9205-RB | 941 | CG9205-RB | 190..861 | 690..19 | 3360 | 100 | Minus |
CG9205-RA | 1105 | CG9205-RA | 354..1025 | 690..19 | 3360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1035559..1035956 | 603..206 | 1990 | 100 | Minus |
3L | 28110227 | 3L | 1036031..1036218 | 206..19 | 940 | 100 | Minus |
3L | 28110227 | 3L | 1035374..1035462 | 690..602 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:16:06 has no hits.
BO04067.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:43 Download gff for
BO04067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-PB | 1..675 | 16..690 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:24 Download gff for
BO04067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-PB | 1..675 | 16..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:20 Download gff for
BO04067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RA | 354..1025 | 19..690 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:25 Download gff for
BO04067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RA | 354..1025 | 19..690 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:25 Download gff for
BO04067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1035374..1035461 | 603..690 | 100 | -> | Minus |
3L | 1035560..1035956 | 206..602 | 100 | -> | Minus |
3L | 1036032..1036212 | 25..205 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:20 Download gff for
BO04067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1035374..1035461 | 603..690 | 100 | -> | Minus |
arm_3L | 1035560..1035956 | 206..602 | 100 | -> | Minus |
arm_3L | 1036032..1036212 | 25..205 | 100 | -> | Minus |
BO04067.5prime Sequence
704 bp (703 high quality bases) assembled on 2005-12-01
> BO04067.5prime
GAAGTTATCAGTCGACATGGAGAGCAACTTGAACAGGATCATTCGTGAAT
CGGCCAAACTGAAACTCTGCGGTCAGCTCAGCAAATACACCAATGTGATG
AAGGGATGGCAGTACCGTTGGTTTACGGTGGACGCCAAGACAGGATCGCT
GAGCTACTACCTGTGCGACTCGTCGACGGTGGGCGACGACATCGCGCCCT
CGCCCCACGTCCTGGCCAGTGCTCCCAGGGGCCAGGTGCAGCTGGCCGGC
GCAGTGGTGTACCCGAGTGACGAGGACTCTAGGACGTTCGCCATCGCCTG
CGCCTCCGGCGATACGGTAAAGCTGAGGGCCAACGATGCCAGGGCCCGTC
AGGAGTGGGTGGATGGCCTGCGGGCGGTGGTCGAGAGTCACATGAAGGCG
ATGGACATCAGCAACTCGTCGCCGCTTCCTCCGCGGGAATTGCTTGCCGC
CTCCGATGCCATGGTTTCAGCGCGCCAAGCTCTGTTTCTCACGGAACAAT
GCAACGCTTCTCTGGCCAGGGCCATCGAGAGCATCGACTGCGCTTCCTTC
TCGCCAACGGATCCCGATCTTCTTTTGCTCAAGGCGATCTCCACGGCCAG
CACCCAGTGCCTGCACCAGTGCTTGGGATTACTGCAACGCCACCAGGAGA
TCAACCAGCCGGTGGCAGAGGCCGTGCCTCTTGTGCTTGCAAGCTTTCTA
GACC
BO04067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9205-PA | 675 | CG9205-RA | 1..672 | 17..688 | 3360 | 100 | Plus |
CG9205-PB | 675 | CG9205-RB | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9205-RB | 941 | CG9205-RB | 190..861 | 17..688 | 3360 | 100 | Plus |
CG9205-RA | 1105 | CG9205-RA | 354..1025 | 17..688 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1035559..1035956 | 104..501 | 1990 | 100 | Plus |
3L | 28110227 | 3L | 1036031..1036218 | 501..688 | 940 | 100 | Plus |
3L | 28110227 | 3L | 1035374..1035462 | 17..105 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:39:20 has no hits.
BO04067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:44 Download gff for
BO04067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-PB | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:25 Download gff for
BO04067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-PB | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:27 Download gff for
BO04067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RA | 354..1025 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:07 Download gff for
BO04067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RA | 354..1025 | 17..688 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:07 Download gff for
BO04067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1035374..1035461 | 17..104 | 100 | -> | Plus |
3L | 1035560..1035956 | 105..501 | 100 | -> | Plus |
3L | 1036032..1036212 | 502..682 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:27 Download gff for
BO04067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1035374..1035461 | 17..104 | 100 | -> | Plus |
arm_3L | 1035560..1035956 | 105..501 | 100 | -> | Plus |
arm_3L | 1036032..1036212 | 502..682 | 100 | -> | Plus |
BO04067.complete Sequence
706 bp (706 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ629624
> BO04067.complete
GAAGTTATCAGTCGACATGGAGAGCAACTTGAACAGGATCATTCGTGAAT
CGGCCAAACTGAAACTCTGCGGTCAGCTCAGCAAATACACCAATGTGATG
AAGGGATGGCAGTACCGTTGGTTTACGGTGGACGCCAAGACAGGATCGCT
GAGCTACTACCTGTGCGACTCGTCGACGGTGGGCGACGACATCGCGCCCT
CGCCCCACGTCCTGGCCAGTGCTCCCAGGGGCCAGGTGCAGCTGGCCGGC
GCAGTGGTGTACCCGAGTGACGAGGACTCTAGGACGTTCGCCATCGCCTG
CGCCTCCGGCGATACGGTAAAGCTGAGGGCCAACGATGCCAGGGCCCGTC
AGGAGTGGGTGGATGGCCTGCGGGCGGTGGTCGAGAGTCACATGAAGGCG
ATGGACATCAGCAACTCGTCGCCGCTTCCTCCGCGGGAATTGCTTGCCGC
CTCCGATGCCATGGTTTCAGCGCGCCAAGCTCTGTTTCTCACGGAACAAT
GCAACGCTTCTCTGGCCAGGGCCATCGAGAGCATCGACTGCGCTTCCTTC
TCGCCAACGGATCCCGATCTTCTTTTGCTCAAGGCGATCTCCACGGCCAG
CACCCAGTGCCTGCACCAGTGCTTGGGATTACTGCAACGCCACCAGGAGA
TCAACCAGCCGGTGGCAGAGGCCGTGCCTCTTGTGCTTGCAAGCTTTCTA
GACCAT
BO04067.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9205-RB | 675 | CG9205-PB | 1..672 | 17..688 | 3360 | 100 | Plus |
CG9205-RA | 675 | CG9205-PA | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9205-RB | 941 | CG9205-RB | 190..861 | 17..688 | 3360 | 100 | Plus |
CG9205-RA | 1105 | CG9205-RA | 354..1025 | 17..688 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1035559..1035956 | 104..501 | 1990 | 100 | Plus |
3L | 28110227 | 3L | 1036031..1036218 | 501..688 | 940 | 100 | Plus |
3L | 28110227 | 3L | 1035374..1035462 | 17..105 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:56:25 has no hits.
BO04067.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:09 Download gff for
BO04067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RB | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:09 Download gff for
BO04067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RB | 185..856 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:45 Download gff for
BO04067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RA | 354..1025 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:09 Download gff for
BO04067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RB | 185..856 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:50 Download gff for
BO04067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9205-RA | 354..1025 | 17..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:50 Download gff for
BO04067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1035374..1035461 | 17..104 | 100 | -> | Plus |
3L | 1035560..1035956 | 105..501 | 100 | -> | Plus |
3L | 1036032..1036218 | 502..690 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:45 Download gff for
BO04067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1035374..1035461 | 17..104 | 100 | -> | Plus |
arm_3L | 1035560..1035956 | 105..501 | 100 | -> | Plus |
arm_3L | 1036032..1036218 | 502..690 | 98 | | Plus |
BO04067.pep Sequence
Translation from 16 to 706
> BO04067.pep
MESNLNRIIRESAKLKLCGQLSKYTNVMKGWQYRWFTVDAKTGSLSYYLC
DSSTVGDDIAPSPHVLASAPRGQVQLAGAVVYPSDEDSRTFAIACASGDT
VKLRANDARARQEWVDGLRAVVESHMKAMDISNSSPLPPRELLAASDAMV
SARQALFLTEQCNASLARAIESIDCASFSPTDPDLLLLKAISTASTQCLH
QCLGLLQRHQEINQPVAEAVPLVLASFLDH
BO04067.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9205-PB | 224 | CG9205-PB | 1..224 | 1..224 | 1142 | 100 | Plus |
CG9205-PA | 224 | CG9205-PA | 1..224 | 1..224 | 1142 | 100 | Plus |
CG1513-PA | 784 | CG1513-PA | 26..120 | 19..125 | 156 | 34.6 | Plus |