Clone BO04067 Report

Search the DGRC for BO04067

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG9205-RA
Protein status:BO04067.pep: validated full length
Sequenced Size:706

Clone Sequence Records

BO04067.3prime Sequence

704 bp (703 high quality bases) assembled on 2005-12-01

> BO04067.3prime
ATGGTCTAGAAAGCTTGCAAGCACAAGAGGCACGGCCTCTGCCACCGGCT
GGTTGATCTCCTGGTGGCGTTGCAGTAATCCCAAGCACTGGTGCAGGCAC
TGGGTGCTGGCCGTGGAGATCGCCTTGAGCAAAAGAAGATCGGGATCCGT
TGGCGAGAAGGAAGCGCAGTCGATGCTCTCGATGGCCCTGGCCAGAGAAG
CGTTGCATTGTTCCGTGAGAAACAGAGCTTGGCGCGCTGAAACCATGGCA
TCGGAGGCGGCAAGCAATTCCCGCGGAGGAAGCGGCGACGAGTTGCTGAT
GTCCATCGCCTTCATGTGACTCTCGACCACCGCCCGCAGGCCATCCACCC
ACTCCTGACGGGCCCTGGCATCGTTGGCCCTCAGCTTTACCGTATCGCCG
GAGGCGCAGGCGATGGCGAACGTCCTAGAGTCCTCGTCACTCGGGTACAC
CACTGCGCCGGCCAGCTGCACCTGGCCCCTGGGAGCACTGGCCAGGACGT
GGGGCGAGGGCGCGATGTCGTCGCCCACCGTCGACGAGTCGCACAGGTAG
TAGCTCAGCGATCCTGTCTTGGCGTCCACCGTAAACCAACGGTACTGCCA
TCCCTTCATCACATTGGTGTATTTGCTGAGCTGACCGCAGAGTTTCAGTT
TGGCCGATTCACGAATGATCCTGTTCAAGTTGCTCTCCATGTCGACTGAT
AACT

BO04067.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-PA 675 CG9205-RA 1..672 690..19 3360 100 Minus
CG9205-PB 675 CG9205-RB 1..672 690..19 3360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-RB 941 CG9205-RB 190..861 690..19 3360 100 Minus
CG9205-RA 1105 CG9205-RA 354..1025 690..19 3360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1035559..1035956 603..206 1990 100 Minus
3L 28110227 3L 1036031..1036218 206..19 940 100 Minus
3L 28110227 3L 1035374..1035462 690..602 445 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:16:06 has no hits.

BO04067.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:43 Download gff for BO04067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-PB 1..675 16..690 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:24 Download gff for BO04067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-PB 1..675 16..690 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:20 Download gff for BO04067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-RA 354..1025 19..690 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:25 Download gff for BO04067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-RA 354..1025 19..690 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:25 Download gff for BO04067.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1035374..1035461 603..690 100 -> Minus
3L 1035560..1035956 206..602 100 -> Minus
3L 1036032..1036212 25..205 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:20 Download gff for BO04067.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1035374..1035461 603..690 100 -> Minus
arm_3L 1035560..1035956 206..602 100 -> Minus
arm_3L 1036032..1036212 25..205 100 -> Minus

BO04067.5prime Sequence

704 bp (703 high quality bases) assembled on 2005-12-01

> BO04067.5prime
GAAGTTATCAGTCGACATGGAGAGCAACTTGAACAGGATCATTCGTGAAT
CGGCCAAACTGAAACTCTGCGGTCAGCTCAGCAAATACACCAATGTGATG
AAGGGATGGCAGTACCGTTGGTTTACGGTGGACGCCAAGACAGGATCGCT
GAGCTACTACCTGTGCGACTCGTCGACGGTGGGCGACGACATCGCGCCCT
CGCCCCACGTCCTGGCCAGTGCTCCCAGGGGCCAGGTGCAGCTGGCCGGC
GCAGTGGTGTACCCGAGTGACGAGGACTCTAGGACGTTCGCCATCGCCTG
CGCCTCCGGCGATACGGTAAAGCTGAGGGCCAACGATGCCAGGGCCCGTC
AGGAGTGGGTGGATGGCCTGCGGGCGGTGGTCGAGAGTCACATGAAGGCG
ATGGACATCAGCAACTCGTCGCCGCTTCCTCCGCGGGAATTGCTTGCCGC
CTCCGATGCCATGGTTTCAGCGCGCCAAGCTCTGTTTCTCACGGAACAAT
GCAACGCTTCTCTGGCCAGGGCCATCGAGAGCATCGACTGCGCTTCCTTC
TCGCCAACGGATCCCGATCTTCTTTTGCTCAAGGCGATCTCCACGGCCAG
CACCCAGTGCCTGCACCAGTGCTTGGGATTACTGCAACGCCACCAGGAGA
TCAACCAGCCGGTGGCAGAGGCCGTGCCTCTTGTGCTTGCAAGCTTTCTA
GACC

BO04067.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-PA 675 CG9205-RA 1..672 17..688 3360 100 Plus
CG9205-PB 675 CG9205-RB 1..672 17..688 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-RB 941 CG9205-RB 190..861 17..688 3360 100 Plus
CG9205-RA 1105 CG9205-RA 354..1025 17..688 3360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1035559..1035956 104..501 1990 100 Plus
3L 28110227 3L 1036031..1036218 501..688 940 100 Plus
3L 28110227 3L 1035374..1035462 17..105 445 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:39:20 has no hits.

BO04067.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:44 Download gff for BO04067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-PB 1..675 17..691 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:25 Download gff for BO04067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-PB 1..675 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:27 Download gff for BO04067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-RA 354..1025 17..688 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:07 Download gff for BO04067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9205-RA 354..1025 17..688 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:07 Download gff for BO04067.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1035374..1035461 17..104 100 -> Plus
3L 1035560..1035956 105..501 100 -> Plus
3L 1036032..1036212 502..682 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:27 Download gff for BO04067.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1035374..1035461 17..104 100 -> Plus
arm_3L 1035560..1035956 105..501 100 -> Plus
arm_3L 1036032..1036212 502..682 100 -> Plus

BO04067.complete Sequence

706 bp (706 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ629624

> BO04067.complete
GAAGTTATCAGTCGACATGGAGAGCAACTTGAACAGGATCATTCGTGAAT
CGGCCAAACTGAAACTCTGCGGTCAGCTCAGCAAATACACCAATGTGATG
AAGGGATGGCAGTACCGTTGGTTTACGGTGGACGCCAAGACAGGATCGCT
GAGCTACTACCTGTGCGACTCGTCGACGGTGGGCGACGACATCGCGCCCT
CGCCCCACGTCCTGGCCAGTGCTCCCAGGGGCCAGGTGCAGCTGGCCGGC
GCAGTGGTGTACCCGAGTGACGAGGACTCTAGGACGTTCGCCATCGCCTG
CGCCTCCGGCGATACGGTAAAGCTGAGGGCCAACGATGCCAGGGCCCGTC
AGGAGTGGGTGGATGGCCTGCGGGCGGTGGTCGAGAGTCACATGAAGGCG
ATGGACATCAGCAACTCGTCGCCGCTTCCTCCGCGGGAATTGCTTGCCGC
CTCCGATGCCATGGTTTCAGCGCGCCAAGCTCTGTTTCTCACGGAACAAT
GCAACGCTTCTCTGGCCAGGGCCATCGAGAGCATCGACTGCGCTTCCTTC
TCGCCAACGGATCCCGATCTTCTTTTGCTCAAGGCGATCTCCACGGCCAG
CACCCAGTGCCTGCACCAGTGCTTGGGATTACTGCAACGCCACCAGGAGA
TCAACCAGCCGGTGGCAGAGGCCGTGCCTCTTGTGCTTGCAAGCTTTCTA
GACCAT

BO04067.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-RB 675 CG9205-PB 1..672 17..688 3360 100 Plus
CG9205-RA 675 CG9205-PA 1..672 17..688 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-RB 941 CG9205-RB 190..861 17..688 3360 100 Plus
CG9205-RA 1105 CG9205-RA 354..1025 17..688 3360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1035559..1035956 104..501 1990 100 Plus
3L 28110227 3L 1036031..1036218 501..688 940 100 Plus
3L 28110227 3L 1035374..1035462 17..105 445 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:56:25 has no hits.

BO04067.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:09 Download gff for BO04067.complete
Subject Subject Range Query Range Percent Splice Strand
CG9205-RB 1..675 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:09 Download gff for BO04067.complete
Subject Subject Range Query Range Percent Splice Strand
CG9205-RB 185..856 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:45 Download gff for BO04067.complete
Subject Subject Range Query Range Percent Splice Strand
CG9205-RA 354..1025 17..690 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:09 Download gff for BO04067.complete
Subject Subject Range Query Range Percent Splice Strand
CG9205-RB 185..856 17..688 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:50 Download gff for BO04067.complete
Subject Subject Range Query Range Percent Splice Strand
CG9205-RA 354..1025 17..690 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:50 Download gff for BO04067.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1035374..1035461 17..104 100 -> Plus
3L 1035560..1035956 105..501 100 -> Plus
3L 1036032..1036218 502..690 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:45 Download gff for BO04067.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1035374..1035461 17..104 100 -> Plus
arm_3L 1035560..1035956 105..501 100 -> Plus
arm_3L 1036032..1036218 502..690 98   Plus

BO04067.pep Sequence

Translation from 16 to 706

> BO04067.pep
MESNLNRIIRESAKLKLCGQLSKYTNVMKGWQYRWFTVDAKTGSLSYYLC
DSSTVGDDIAPSPHVLASAPRGQVQLAGAVVYPSDEDSRTFAIACASGDT
VKLRANDARARQEWVDGLRAVVESHMKAMDISNSSPLPPRELLAASDAMV
SARQALFLTEQCNASLARAIESIDCASFSPTDPDLLLLKAISTASTQCLH
QCLGLLQRHQEINQPVAEAVPLVLASFLDH

BO04067.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9205-PB 224 CG9205-PB 1..224 1..224 1142 100 Plus
CG9205-PA 224 CG9205-PA 1..224 1..224 1142 100 Plus
CG1513-PA 784 CG1513-PA 26..120 19..125 156 34.6 Plus