Clone BO04068 Report

Search the DGRC for BO04068

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:68
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO04068.pep: validated full length
Sequenced Size:706

Clone Sequence Records

BO04068.5prime Sequence

704 bp (704 high quality bases) assembled on 2006-02-03

> BO04068.5prime
GAAGTTATCAGTCGACATGTACGACCGACTGATGGCCCAATTCGCCCAGT
GCAAGCTCACTGCGTTAAAGAATGTACAAACTCTGCAGATGATCGCCGGT
GAGCGTGACAACTACACACAACTAGTTGAACACCACGAAGAAAGTATTGT
TTTGGCTAAAGCGGAAATCGAATCCAGTAAAAAAGAGCTAATCACTGCCA
AGCAGATTCGCAAGAACAAGATGGAGTACGACCTGCTGGCCTCGCTCATC
CAGGACCAACCGGACCGCAGTGAAACACAGCGACATATTGAGACCATTAG
GAGGGAGATTGACGACTTGGTGCAAAAGAAGCTAAAGATGGAGCGCAAGT
TTCAGAAACGACGCAATGACTTCACTTTGCTGATGTACACGATTCACGAG
CTGGAACAGCAGCTGGACCAGGACAGCTCATCCTCGGCATCCTCCTCGTC
CAGCGATTGCGATGCCCGCTCTGAGCCGGACCTAGACGACAATGGGATCA
TGGAGGTAAGCGATGAAGACGACGATCTCAACAATAGCACTCCCACAAAG
TTCGACGGAGCCCGCGGCGAGCCCAAATATCACTCAGTCTCTACTGAGGA
CTCTAAAGCCATGTCCGTAGAAGAGGACACGGTGCTTGAGCTAAGCATCG
ACAAAGATGAGCACGACGTGGATGTAGCTGTTGCCAATGCAAGCTTTCTA
GACC

BO04068.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17143-PB 864 thoc7-RB 189..861 16..688 3365 100 Plus
CG17143-PA 675 thoc7-RA 1..672 17..688 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
thoc7-RB 926 CG17143-RB 189..861 16..688 3365 100 Plus
thoc7-RA 929 CG17143-RA 192..864 16..688 3365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 211701..212373 688..16 3365 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:44:22 has no hits.

BO04068.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:45 Download gff for BO04068.5prime
Subject Subject Range Query Range Percent Splice Strand
thoc7-PB 180..864 9..689 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:28 Download gff for BO04068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17143-PB 180..864 9..689 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:04 Download gff for BO04068.5prime
Subject Subject Range Query Range Percent Splice Strand
thoc7-RA 183..870 9..696 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:35:38 Download gff for BO04068.5prime
Subject Subject Range Query Range Percent Splice Strand
thoc7-RA 183..870 9..696 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:35:38 Download gff for BO04068.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 211695..212388 1..696 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:04 Download gff for BO04068.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 211695..212388 1..696 98   Minus

BO04068.3prime Sequence

704 bp (703 high quality bases) assembled on 2005-12-01

> BO04068.3prime
ATGGTCTAGAAAGCTTGCATTGGCAACAGCTACATCCACGTCGTGCTCAT
CTTTGTCGATGCTTAGCTCAAGCACCGTGTCCTCTTCTACGGACATGGCT
TTAGAGTCCTCAGTAGAGACTGAGTGATATTTGGGCTCGCCGCGGGCTCC
GTCGAACTTTGTGGGAGTGCTATTGTTGAGATCGTCGTCTTCATCGCTTA
CCTCCATGATCCCATTGTCGTCTAGGTCCGGCTCAGAGCGGGCATCGCAA
TCGCTGGACGAGGAGGATGCCGAGGATGAGCTGTCCTGGTCCAGCTGCTG
TTCCAGCTCGTGAATCGTGTACATCAGCAAAGTGAAGTCATTGCGTCGTT
TCTGAAACTTGCGCTCCATCTTTAGCTTCTTTTGCACCAAGTCGTCAATC
TCCCTCCTAATGGTCTCAATATGTCGCTGTGTTTCACTGCGGTCCGGTTG
GTCCTGGATGAGCGAGGCCAGCAGGTCGTACTCCATCTTGTTCTTGCGAA
TCTGCTTGGCAGTGATTAGCTCTTTTTTACTGGATTCGATTTCCGCTTTA
GCCAAAACAATACTTTCTTCGTGGTGTTCAACTAGTTGTGTGTAGTTGTC
ACGCTCACCGGCGATCATCTGCAGAGTTTGTACATTCTTTAACGCAGTGA
GCTTGCACTGGGCGAATTGGGCCATCAGTCGGTCGTACATGTCGACTGAT
AACT

BO04068.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17143-PB 864 thoc7-RB 189..861 691..19 3365 100 Minus
CG17143-PA 675 thoc7-RA 1..672 690..19 3360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
thoc7-RB 926 CG17143-RB 189..861 691..19 3365 100 Minus
thoc7-RA 929 CG17143-RA 192..864 691..19 3365 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 211701..212373 19..691 3365 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:01:24 has no hits.

BO04068.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:44 Download gff for BO04068.3prime
Subject Subject Range Query Range Percent Splice Strand
thoc7-PB 180..864 18..698 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:26 Download gff for BO04068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17143-PB 180..864 18..698 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:36:47 Download gff for BO04068.3prime
Subject Subject Range Query Range Percent Splice Strand
thoc7-RA 183..870 11..698 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:52:38 Download gff for BO04068.3prime
Subject Subject Range Query Range Percent Splice Strand
thoc7-RA 183..870 11..698 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:52:38 Download gff for BO04068.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 211695..212386 11..704 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:36:47 Download gff for BO04068.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 211695..212386 11..704 98   Plus

BO04068.complete Sequence

706 bp (706 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629625

> BO04068.complete
GAAGTTATCAGTCGACATGTACGACCGACTGATGGCCCAATTCGCCCAGT
GCAAGCTCACTGCGTTAAAGAATGTACAAACTCTGCAGATGATCGCCGGT
GAGCGTGACAACTACACACAACTAGTTGAACACCACGAAGAAAGTATTGT
TTTGGCTAAAGCGGAAATCGAATCCAGTAAAAAAGAGCTAATCACTGCCA
AGCAGATTCGCAAGAACAAGATGGAGTACGACCTGCTGGCCTCGCTCATC
CAGGACCAACCGGACCGCAGTGAAACACAGCGACATATTGAGACCATTAG
GAGGGAGATTGACGACTTGGTGCAAAAGAAGCTAAAGATGGAGCGCAAGT
TTCAGAAACGACGCAATGACTTCACTTTGCTGATGTACACGATTCACGAG
CTGGAACAGCAGCTGGACCAGGACAGCTCATCCTCGGCATCCTCCTCGTC
CAGCGATTGCGATGCCCGCTCTGAGCCGGACCTAGACGACAATGGGATCA
TGGAGGTAAGCGATGAAGACGACGATCTCAACAATAGCACTCCCACAAAG
TTCGACGGAGCCCGCGGCGAGCCCAAATATCACTCAGTCTCTACTGAGGA
CTCTAAAGCCATGTCCGTAGAAGAGGACACGGTGCTTGAGCTAAGCATCG
ACAAAGATGAGCACGACGTGGATGTAGCTGTTGCCAATGCAAGCTTTCTA
GACCAT

BO04068.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
thoc7-RB 864 CG17143-PB 189..861 16..688 3365 100 Plus
thoc7-RA 867 CG17143-PA 192..864 16..688 3365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
thoc7-RB 926 CG17143-RB 189..861 16..688 3365 100 Plus
thoc7-RA 929 CG17143-RA 192..864 16..688 3365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 211701..212373 688..16 3365 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:13:32 has no hits.

BO04068.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:52 Download gff for BO04068.complete
Subject Subject Range Query Range Percent Splice Strand
thoc7-RB 180..864 9..689 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:05:02 Download gff for BO04068.complete
Subject Subject Range Query Range Percent Splice Strand
thoc7-RB 180..867 9..696 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:04 Download gff for BO04068.complete
Subject Subject Range Query Range Percent Splice Strand
thoc7-RA 193..864 17..690 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:52 Download gff for BO04068.complete
Subject Subject Range Query Range Percent Splice Strand
thoc7-RB 180..867 9..696 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:20 Download gff for BO04068.complete
Subject Subject Range Query Range Percent Splice Strand
thoc7-RA 193..864 17..690 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:20 Download gff for BO04068.complete
Subject Subject Range Query Range Percent Splice Strand
3L 211699..212372 17..690 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:04 Download gff for BO04068.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 211699..212372 17..690 99   Minus

BO04068.pep Sequence

Translation from 16 to 706

> BO04068.pep
MYDRLMAQFAQCKLTALKNVQTLQMIAGERDNYTQLVEHHEESIVLAKAE
IESSKKELITAKQIRKNKMEYDLLASLIQDQPDRSETQRHIETIRREIDD
LVQKKLKMERKFQKRRNDFTLLMYTIHELEQQLDQDSSSSASSSSSDCDA
RSEPDLDDNGIMEVSDEDDDLNNSTPTKFDGARGEPKYHSVSTEDSKAMS
VEEDTVLELSIDKDEHDVDVAVANASFLDH

BO04068.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
thoc7-PB 287 CG17143-PB 64..287 1..224 1127 100 Plus
thoc7-PA 288 CG17143-PA 65..288 1..224 1127 100 Plus