Clone Sequence Records
BO04068.5prime Sequence
704 bp (704 high quality bases) assembled on 2006-02-03
> BO04068.5prime
GAAGTTATCAGTCGACATGTACGACCGACTGATGGCCCAATTCGCCCAGT
GCAAGCTCACTGCGTTAAAGAATGTACAAACTCTGCAGATGATCGCCGGT
GAGCGTGACAACTACACACAACTAGTTGAACACCACGAAGAAAGTATTGT
TTTGGCTAAAGCGGAAATCGAATCCAGTAAAAAAGAGCTAATCACTGCCA
AGCAGATTCGCAAGAACAAGATGGAGTACGACCTGCTGGCCTCGCTCATC
CAGGACCAACCGGACCGCAGTGAAACACAGCGACATATTGAGACCATTAG
GAGGGAGATTGACGACTTGGTGCAAAAGAAGCTAAAGATGGAGCGCAAGT
TTCAGAAACGACGCAATGACTTCACTTTGCTGATGTACACGATTCACGAG
CTGGAACAGCAGCTGGACCAGGACAGCTCATCCTCGGCATCCTCCTCGTC
CAGCGATTGCGATGCCCGCTCTGAGCCGGACCTAGACGACAATGGGATCA
TGGAGGTAAGCGATGAAGACGACGATCTCAACAATAGCACTCCCACAAAG
TTCGACGGAGCCCGCGGCGAGCCCAAATATCACTCAGTCTCTACTGAGGA
CTCTAAAGCCATGTCCGTAGAAGAGGACACGGTGCTTGAGCTAAGCATCG
ACAAAGATGAGCACGACGTGGATGTAGCTGTTGCCAATGCAAGCTTTCTA
GACC
BO04068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17143-PB | 864 | thoc7-RB | 189..861 | 16..688 | 3365 | 100 | Plus |
CG17143-PA | 675 | thoc7-RA | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
thoc7-RB | 926 | CG17143-RB | 189..861 | 16..688 | 3365 | 100 | Plus |
thoc7-RA | 929 | CG17143-RA | 192..864 | 16..688 | 3365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:44:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 211701..212373 | 688..16 | 3365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:44:22 has no hits.
BO04068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:45 Download gff for
BO04068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc7-PB | 180..864 | 9..689 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:28 Download gff for
BO04068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17143-PB | 180..864 | 9..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:04 Download gff for
BO04068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc7-RA | 183..870 | 9..696 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:35:38 Download gff for
BO04068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc7-RA | 183..870 | 9..696 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:35:38 Download gff for
BO04068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 211695..212388 | 1..696 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:04 Download gff for
BO04068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 211695..212388 | 1..696 | 98 | | Minus |
BO04068.3prime Sequence
704 bp (703 high quality bases) assembled on 2005-12-01
> BO04068.3prime
ATGGTCTAGAAAGCTTGCATTGGCAACAGCTACATCCACGTCGTGCTCAT
CTTTGTCGATGCTTAGCTCAAGCACCGTGTCCTCTTCTACGGACATGGCT
TTAGAGTCCTCAGTAGAGACTGAGTGATATTTGGGCTCGCCGCGGGCTCC
GTCGAACTTTGTGGGAGTGCTATTGTTGAGATCGTCGTCTTCATCGCTTA
CCTCCATGATCCCATTGTCGTCTAGGTCCGGCTCAGAGCGGGCATCGCAA
TCGCTGGACGAGGAGGATGCCGAGGATGAGCTGTCCTGGTCCAGCTGCTG
TTCCAGCTCGTGAATCGTGTACATCAGCAAAGTGAAGTCATTGCGTCGTT
TCTGAAACTTGCGCTCCATCTTTAGCTTCTTTTGCACCAAGTCGTCAATC
TCCCTCCTAATGGTCTCAATATGTCGCTGTGTTTCACTGCGGTCCGGTTG
GTCCTGGATGAGCGAGGCCAGCAGGTCGTACTCCATCTTGTTCTTGCGAA
TCTGCTTGGCAGTGATTAGCTCTTTTTTACTGGATTCGATTTCCGCTTTA
GCCAAAACAATACTTTCTTCGTGGTGTTCAACTAGTTGTGTGTAGTTGTC
ACGCTCACCGGCGATCATCTGCAGAGTTTGTACATTCTTTAACGCAGTGA
GCTTGCACTGGGCGAATTGGGCCATCAGTCGGTCGTACATGTCGACTGAT
AACT
BO04068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17143-PB | 864 | thoc7-RB | 189..861 | 691..19 | 3365 | 100 | Minus |
CG17143-PA | 675 | thoc7-RA | 1..672 | 690..19 | 3360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
thoc7-RB | 926 | CG17143-RB | 189..861 | 691..19 | 3365 | 100 | Minus |
thoc7-RA | 929 | CG17143-RA | 192..864 | 691..19 | 3365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 211701..212373 | 19..691 | 3365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:01:24 has no hits.
BO04068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:44 Download gff for
BO04068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc7-PB | 180..864 | 18..698 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:26 Download gff for
BO04068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17143-PB | 180..864 | 18..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:36:47 Download gff for
BO04068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc7-RA | 183..870 | 11..698 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:52:38 Download gff for
BO04068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc7-RA | 183..870 | 11..698 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:52:38 Download gff for
BO04068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 211695..212386 | 11..704 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:36:47 Download gff for
BO04068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 211695..212386 | 11..704 | 98 | | Plus |
BO04068.complete Sequence
706 bp (706 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629625
> BO04068.complete
GAAGTTATCAGTCGACATGTACGACCGACTGATGGCCCAATTCGCCCAGT
GCAAGCTCACTGCGTTAAAGAATGTACAAACTCTGCAGATGATCGCCGGT
GAGCGTGACAACTACACACAACTAGTTGAACACCACGAAGAAAGTATTGT
TTTGGCTAAAGCGGAAATCGAATCCAGTAAAAAAGAGCTAATCACTGCCA
AGCAGATTCGCAAGAACAAGATGGAGTACGACCTGCTGGCCTCGCTCATC
CAGGACCAACCGGACCGCAGTGAAACACAGCGACATATTGAGACCATTAG
GAGGGAGATTGACGACTTGGTGCAAAAGAAGCTAAAGATGGAGCGCAAGT
TTCAGAAACGACGCAATGACTTCACTTTGCTGATGTACACGATTCACGAG
CTGGAACAGCAGCTGGACCAGGACAGCTCATCCTCGGCATCCTCCTCGTC
CAGCGATTGCGATGCCCGCTCTGAGCCGGACCTAGACGACAATGGGATCA
TGGAGGTAAGCGATGAAGACGACGATCTCAACAATAGCACTCCCACAAAG
TTCGACGGAGCCCGCGGCGAGCCCAAATATCACTCAGTCTCTACTGAGGA
CTCTAAAGCCATGTCCGTAGAAGAGGACACGGTGCTTGAGCTAAGCATCG
ACAAAGATGAGCACGACGTGGATGTAGCTGTTGCCAATGCAAGCTTTCTA
GACCAT
BO04068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:13:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
thoc7-RB | 864 | CG17143-PB | 189..861 | 16..688 | 3365 | 100 | Plus |
thoc7-RA | 867 | CG17143-PA | 192..864 | 16..688 | 3365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
thoc7-RB | 926 | CG17143-RB | 189..861 | 16..688 | 3365 | 100 | Plus |
thoc7-RA | 929 | CG17143-RA | 192..864 | 16..688 | 3365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 211701..212373 | 688..16 | 3365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:13:32 has no hits.
BO04068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:52 Download gff for
BO04068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc7-RB | 180..864 | 9..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:05:02 Download gff for
BO04068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc7-RB | 180..867 | 9..696 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:04 Download gff for
BO04068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc7-RA | 193..864 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:52 Download gff for
BO04068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc7-RB | 180..867 | 9..696 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:20 Download gff for
BO04068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc7-RA | 193..864 | 17..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:20 Download gff for
BO04068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 211699..212372 | 17..690 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:04 Download gff for
BO04068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 211699..212372 | 17..690 | 99 | | Minus |
BO04068.pep Sequence
Translation from 16 to 706
> BO04068.pep
MYDRLMAQFAQCKLTALKNVQTLQMIAGERDNYTQLVEHHEESIVLAKAE
IESSKKELITAKQIRKNKMEYDLLASLIQDQPDRSETQRHIETIRREIDD
LVQKKLKMERKFQKRRNDFTLLMYTIHELEQQLDQDSSSSASSSSSDCDA
RSEPDLDDNGIMEVSDEDDDLNNSTPTKFDGARGEPKYHSVSTEDSKAMS
VEEDTVLELSIDKDEHDVDVAVANASFLDH
BO04068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
thoc7-PB | 287 | CG17143-PB | 64..287 | 1..224 | 1127 | 100 | Plus |
thoc7-PA | 288 | CG17143-PA | 65..288 | 1..224 | 1127 | 100 | Plus |