Clone BO04070 Report

Search the DGRC for BO04070

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG9628-RA
Protein status:BO04070.pep: validated not full length
Sequenced Size:520

Clone Sequence Records

BO04070.3prime Sequence

518 bp (517 high quality bases) assembled on 2005-12-01

> BO04070.3prime
ATGGTCTAGAAAGCTTGCTTCTAGATCACCGTGGACACCTAAACGCAGGG
TGATGAGTATGTCCAGCAAGAAGACCAGCGAGGTAACCAAGGCAATCGAG
GCGGAAGCCATCACGAGATCCAAACGATGCATATTCGGGTGCCAGTAGTT
GCGATCCTTGGTGGTGGACCAATCCCGGAAAAGCAGGGCGGTTACGGCCA
CGAAGAGCACAAAGGCCACTAGATTCCACAAAGTAGCCGTACGCCATGGA
GTCAAATCACCGAAGAGCGCCATTATCAGATAGATTGCCGTGTAGATGGT
CAGTGCTCCAAAGGTCACATAGCAAAGGGAAGCCACTCGGGGAGTGATGA
ACACCCGCAGATGAGAATTGGTGGCCGGCTCGTCGATCAGACCCAAACAG
CATATAAGCAGGCACAGTTCCACAATCTTGATGCATATCACCGTGTAGGT
GGCCTTTTTGTTTCCATGAGTTGTGGCAAAGGAATTATCGTCAGCCGGCG
ACATGTCGACTGATAACT

BO04070.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-PB 528 CG9628-RB 34..525 510..19 2435 99.7 Minus
CG9628-PA 489 CG9628-RA 1..486 504..19 2430 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-RC 890 CG9628-RC 206..697 510..19 2445 99.8 Minus
CG9628-RB 1053 CG9628-RB 178..669 510..19 2445 99.8 Minus
CG9628-RA 1125 CG9628-RA 250..741 510..19 2445 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14627556..14627790 253..19 1175 100 Minus
3L 28110227 3L 14627334..14627496 415..253 815 100 Minus
3L 28110227 3L 14627031..14627126 510..415 465 99 Minus
Blast to na_te.dros performed on 2015-02-11 23:01:39 has no hits.

BO04070.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:47 Download gff for BO04070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-PB 34..528 16..510 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:31 Download gff for BO04070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-PB 34..528 16..510 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:00 Download gff for BO04070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 250..741 19..510 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:33:44 Download gff for BO04070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 250..741 19..510 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:33:44 Download gff for BO04070.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14627031..14627126 415..510 98 -> Minus
3L 14627335..14627495 254..414 100 -> Minus
3L 14627556..14627790 19..253 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:00 Download gff for BO04070.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14620131..14620226 415..510 98 -> Minus
arm_3L 14620435..14620595 254..414 100 -> Minus
arm_3L 14620656..14620890 19..253 100   Minus

BO04070.5prime Sequence

518 bp (517 high quality bases) assembled on 2005-12-01

> BO04070.5prime
GAAGTTATCAGTCGACATGTCGCCGGCTGACGATAATTCCTTTGCCACAA
CTCATGGAAACAAAAAGGCCACCTACACGGTGATATGCATCAAGATTGTG
GAACTGTGCCTGCTTATATGCTGTTTGGGTCTGATCGACGAGCCGGCCAC
CAATTCTCATCTGCGGGTGTTCATCACTCCCCGAGTGGCTTCCCTTTGCT
ATGTGACCTTTGGAGCACTGACCATCTACACGGCAATCTATCTGATAATG
GCGCTCTTCGGTGATTTGACTCCATGGCGTACGGCTACTTTGTGGAATCT
AGTGGCCTTTGTGCTCTTCGTGGCCGTAACCGCCCTGCTTTTCCGGGATT
GGTCCACCACCAAGGATCGCAACTACTGGCACCCGAATATGCATCGTTTG
GATCTCGTGATGGCTTCCGCCTCGATTGCCTTGGTTACCTCGCTGGTCTT
CTTGCTGGACATACTCATCACCCTGCGTTTAGGTGTCCACGGTGATCTAG
AAGCAAGCTTTCTAGACC

BO04070.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-PB 528 CG9628-RB 34..525 11..502 2435 99.7 Plus
CG9628-PA 489 CG9628-RA 1..486 17..502 2430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-RC 890 CG9628-RC 206..697 11..502 2445 99.8 Plus
CG9628-RB 1053 CG9628-RB 178..669 11..502 2445 99.8 Plus
CG9628-RA 1125 CG9628-RA 250..741 11..502 2445 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14627556..14627790 268..502 1175 100 Plus
3L 28110227 3L 14627334..14627496 106..268 815 100 Plus
3L 28110227 3L 14627031..14627126 11..106 465 99 Plus
Blast to na_te.dros performed on 2015-02-12 06:14:02 has no hits.

BO04070.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:48 Download gff for BO04070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-PB 34..528 11..505 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:32 Download gff for BO04070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-PB 34..528 11..505 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:10 Download gff for BO04070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 250..741 11..502 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:53:31 Download gff for BO04070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 250..741 11..502 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:53:31 Download gff for BO04070.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14627031..14627126 11..106 98 -> Plus
3L 14627335..14627495 107..267 100 -> Plus
3L 14627556..14627790 268..502 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:10 Download gff for BO04070.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14620131..14620226 11..106 98 -> Plus
arm_3L 14620435..14620595 107..267 100 -> Plus
arm_3L 14620656..14620890 268..502 100   Plus

BO04070.complete Sequence

520 bp (520 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629626

> BO04070.complete
GAAGTTATCAGTCGACATGTCGCCGGCTGACGATAATTCCTTTGCCACAA
CTCATGGAAACAAAAAGGCCACCTACACGGTGATATGCATCAAGATTGTG
GAACTGTGCCTGCTTATATGCTGTTTGGGTCTGATCGACGAGCCGGCCAC
CAATTCTCATCTGCGGGTGTTCATCACTCCCCGAGTGGCTTCCCTTTGCT
ATGTGACCTTTGGAGCACTGACCATCTACACGGCAATCTATCTGATAATG
GCGCTCTTCGGTGATTTGACTCCATGGCGTACGGCTACTTTGTGGAATCT
AGTGGCCTTTGTGCTCTTCGTGGCCGTAACCGCCCTGCTTTTCCGGGATT
GGTCCACCACCAAGGATCGCAACTACTGGCACCCGAATATGCATCGTTTG
GATCTCGTGATGGCTTCCGCCTCGATTGCCTTGGTTACCTCGCTGGTCTT
CTTGCTGGACATACTCATCACCCTGCGTTTAGGTGTCCACGGTGATCTAG
AAGCAAGCTTTCTAGACCAT

BO04070.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-RC 528 CG9628-PC 34..525 11..502 2445 99.8 Plus
CG9628-RB 528 CG9628-PB 34..525 11..502 2445 99.8 Plus
CG9628-RA 489 CG9628-PA 1..486 17..502 2430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-RC 890 CG9628-RC 206..697 11..502 2445 99.8 Plus
CG9628-RB 1053 CG9628-RB 178..669 11..502 2445 99.8 Plus
CG9628-RA 1125 CG9628-RA 250..741 11..502 2445 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14627556..14627790 268..502 1175 100 Plus
3L 28110227 3L 14627334..14627496 106..268 815 100 Plus
3L 28110227 3L 14627031..14627126 11..106 465 99 Plus
Blast to na_te.dros performed on 2014-11-27 13:45:38 has no hits.

BO04070.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:19 Download gff for BO04070.complete
Subject Subject Range Query Range Percent Splice Strand
CG9628-RB 34..528 11..505 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:16 Download gff for BO04070.complete
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 236..727 11..502 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:12 Download gff for BO04070.complete
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 256..741 17..504 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:19 Download gff for BO04070.complete
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 236..727 11..502 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:55 Download gff for BO04070.complete
Subject Subject Range Query Range Percent Splice Strand
CG9628-RA 256..741 17..504 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:55 Download gff for BO04070.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14627556..14627790 268..504 99   Plus
3L 14627037..14627126 17..106 100 -> Plus
3L 14627335..14627495 107..267 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:12 Download gff for BO04070.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14620137..14620226 17..106 100 -> Plus
arm_3L 14620435..14620595 107..267 100 -> Plus
arm_3L 14620656..14620890 268..504 99   Plus

BO04070.pep Sequence

Translation from 16 to 520

> BO04070.pep
MSPADDNSFATTHGNKKATYTVICIKIVELCLLICCLGLIDEPATNSHLR
VFITPRVASLCYVTFGALTIYTAIYLIMALFGDLTPWRTATLWNLVAFVL
FVAVTALLFRDWSTTKDRNYWHPNMHRLDLVMASASIALVTSLVFLLDIL
ITLRLGVHGDLEASFLDH

BO04070.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-PA 162 CG9628-PA 1..162 1..162 844 100 Plus
CG9628-PC 175 CG9628-PC 14..175 1..162 844 100 Plus
CG9628-PB 175 CG9628-PB 14..175 1..162 844 100 Plus