Clone Sequence Records
BO04070.3prime Sequence
518 bp (517 high quality bases) assembled on 2005-12-01
> BO04070.3prime
ATGGTCTAGAAAGCTTGCTTCTAGATCACCGTGGACACCTAAACGCAGGG
TGATGAGTATGTCCAGCAAGAAGACCAGCGAGGTAACCAAGGCAATCGAG
GCGGAAGCCATCACGAGATCCAAACGATGCATATTCGGGTGCCAGTAGTT
GCGATCCTTGGTGGTGGACCAATCCCGGAAAAGCAGGGCGGTTACGGCCA
CGAAGAGCACAAAGGCCACTAGATTCCACAAAGTAGCCGTACGCCATGGA
GTCAAATCACCGAAGAGCGCCATTATCAGATAGATTGCCGTGTAGATGGT
CAGTGCTCCAAAGGTCACATAGCAAAGGGAAGCCACTCGGGGAGTGATGA
ACACCCGCAGATGAGAATTGGTGGCCGGCTCGTCGATCAGACCCAAACAG
CATATAAGCAGGCACAGTTCCACAATCTTGATGCATATCACCGTGTAGGT
GGCCTTTTTGTTTCCATGAGTTGTGGCAAAGGAATTATCGTCAGCCGGCG
ACATGTCGACTGATAACT
BO04070.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-PB | 528 | CG9628-RB | 34..525 | 510..19 | 2435 | 99.7 | Minus |
CG9628-PA | 489 | CG9628-RA | 1..486 | 504..19 | 2430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-RC | 890 | CG9628-RC | 206..697 | 510..19 | 2445 | 99.8 | Minus |
CG9628-RB | 1053 | CG9628-RB | 178..669 | 510..19 | 2445 | 99.8 | Minus |
CG9628-RA | 1125 | CG9628-RA | 250..741 | 510..19 | 2445 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:01:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14627556..14627790 | 253..19 | 1175 | 100 | Minus |
3L | 28110227 | 3L | 14627334..14627496 | 415..253 | 815 | 100 | Minus |
3L | 28110227 | 3L | 14627031..14627126 | 510..415 | 465 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:01:39 has no hits.
BO04070.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:47 Download gff for
BO04070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-PB | 34..528 | 16..510 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:31 Download gff for
BO04070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-PB | 34..528 | 16..510 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:00 Download gff for
BO04070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RA | 250..741 | 19..510 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:33:44 Download gff for
BO04070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RA | 250..741 | 19..510 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:33:44 Download gff for
BO04070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14627031..14627126 | 415..510 | 98 | -> | Minus |
3L | 14627335..14627495 | 254..414 | 100 | -> | Minus |
3L | 14627556..14627790 | 19..253 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:00 Download gff for
BO04070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14620131..14620226 | 415..510 | 98 | -> | Minus |
arm_3L | 14620435..14620595 | 254..414 | 100 | -> | Minus |
arm_3L | 14620656..14620890 | 19..253 | 100 | | Minus |
BO04070.5prime Sequence
518 bp (517 high quality bases) assembled on 2005-12-01
> BO04070.5prime
GAAGTTATCAGTCGACATGTCGCCGGCTGACGATAATTCCTTTGCCACAA
CTCATGGAAACAAAAAGGCCACCTACACGGTGATATGCATCAAGATTGTG
GAACTGTGCCTGCTTATATGCTGTTTGGGTCTGATCGACGAGCCGGCCAC
CAATTCTCATCTGCGGGTGTTCATCACTCCCCGAGTGGCTTCCCTTTGCT
ATGTGACCTTTGGAGCACTGACCATCTACACGGCAATCTATCTGATAATG
GCGCTCTTCGGTGATTTGACTCCATGGCGTACGGCTACTTTGTGGAATCT
AGTGGCCTTTGTGCTCTTCGTGGCCGTAACCGCCCTGCTTTTCCGGGATT
GGTCCACCACCAAGGATCGCAACTACTGGCACCCGAATATGCATCGTTTG
GATCTCGTGATGGCTTCCGCCTCGATTGCCTTGGTTACCTCGCTGGTCTT
CTTGCTGGACATACTCATCACCCTGCGTTTAGGTGTCCACGGTGATCTAG
AAGCAAGCTTTCTAGACC
BO04070.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-PB | 528 | CG9628-RB | 34..525 | 11..502 | 2435 | 99.7 | Plus |
CG9628-PA | 489 | CG9628-RA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-RC | 890 | CG9628-RC | 206..697 | 11..502 | 2445 | 99.8 | Plus |
CG9628-RB | 1053 | CG9628-RB | 178..669 | 11..502 | 2445 | 99.8 | Plus |
CG9628-RA | 1125 | CG9628-RA | 250..741 | 11..502 | 2445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14627556..14627790 | 268..502 | 1175 | 100 | Plus |
3L | 28110227 | 3L | 14627334..14627496 | 106..268 | 815 | 100 | Plus |
3L | 28110227 | 3L | 14627031..14627126 | 11..106 | 465 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:14:02 has no hits.
BO04070.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:48 Download gff for
BO04070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-PB | 34..528 | 11..505 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:32 Download gff for
BO04070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-PB | 34..528 | 11..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:10 Download gff for
BO04070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RA | 250..741 | 11..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:53:31 Download gff for
BO04070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RA | 250..741 | 11..502 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:53:31 Download gff for
BO04070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14627031..14627126 | 11..106 | 98 | -> | Plus |
3L | 14627335..14627495 | 107..267 | 100 | -> | Plus |
3L | 14627556..14627790 | 268..502 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:10 Download gff for
BO04070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14620131..14620226 | 11..106 | 98 | -> | Plus |
arm_3L | 14620435..14620595 | 107..267 | 100 | -> | Plus |
arm_3L | 14620656..14620890 | 268..502 | 100 | | Plus |
BO04070.complete Sequence
520 bp (520 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629626
> BO04070.complete
GAAGTTATCAGTCGACATGTCGCCGGCTGACGATAATTCCTTTGCCACAA
CTCATGGAAACAAAAAGGCCACCTACACGGTGATATGCATCAAGATTGTG
GAACTGTGCCTGCTTATATGCTGTTTGGGTCTGATCGACGAGCCGGCCAC
CAATTCTCATCTGCGGGTGTTCATCACTCCCCGAGTGGCTTCCCTTTGCT
ATGTGACCTTTGGAGCACTGACCATCTACACGGCAATCTATCTGATAATG
GCGCTCTTCGGTGATTTGACTCCATGGCGTACGGCTACTTTGTGGAATCT
AGTGGCCTTTGTGCTCTTCGTGGCCGTAACCGCCCTGCTTTTCCGGGATT
GGTCCACCACCAAGGATCGCAACTACTGGCACCCGAATATGCATCGTTTG
GATCTCGTGATGGCTTCCGCCTCGATTGCCTTGGTTACCTCGCTGGTCTT
CTTGCTGGACATACTCATCACCCTGCGTTTAGGTGTCCACGGTGATCTAG
AAGCAAGCTTTCTAGACCAT
BO04070.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-RC | 528 | CG9628-PC | 34..525 | 11..502 | 2445 | 99.8 | Plus |
CG9628-RB | 528 | CG9628-PB | 34..525 | 11..502 | 2445 | 99.8 | Plus |
CG9628-RA | 489 | CG9628-PA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-RC | 890 | CG9628-RC | 206..697 | 11..502 | 2445 | 99.8 | Plus |
CG9628-RB | 1053 | CG9628-RB | 178..669 | 11..502 | 2445 | 99.8 | Plus |
CG9628-RA | 1125 | CG9628-RA | 250..741 | 11..502 | 2445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14627556..14627790 | 268..502 | 1175 | 100 | Plus |
3L | 28110227 | 3L | 14627334..14627496 | 106..268 | 815 | 100 | Plus |
3L | 28110227 | 3L | 14627031..14627126 | 11..106 | 465 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:45:38 has no hits.
BO04070.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:19 Download gff for
BO04070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 34..528 | 11..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:16 Download gff for
BO04070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RA | 236..727 | 11..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:12 Download gff for
BO04070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RA | 256..741 | 17..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:19 Download gff for
BO04070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RA | 236..727 | 11..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:55 Download gff for
BO04070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RA | 256..741 | 17..504 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:55 Download gff for
BO04070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14627556..14627790 | 268..504 | 99 | | Plus |
3L | 14627037..14627126 | 17..106 | 100 | -> | Plus |
3L | 14627335..14627495 | 107..267 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:12 Download gff for
BO04070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14620137..14620226 | 17..106 | 100 | -> | Plus |
arm_3L | 14620435..14620595 | 107..267 | 100 | -> | Plus |
arm_3L | 14620656..14620890 | 268..504 | 99 | | Plus |
BO04070.pep Sequence
Translation from 16 to 520
> BO04070.pep
MSPADDNSFATTHGNKKATYTVICIKIVELCLLICCLGLIDEPATNSHLR
VFITPRVASLCYVTFGALTIYTAIYLIMALFGDLTPWRTATLWNLVAFVL
FVAVTALLFRDWSTTKDRNYWHPNMHRLDLVMASASIALVTSLVFLLDIL
ITLRLGVHGDLEASFLDH
BO04070.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-PA | 162 | CG9628-PA | 1..162 | 1..162 | 844 | 100 | Plus |
CG9628-PC | 175 | CG9628-PC | 14..175 | 1..162 | 844 | 100 | Plus |
CG9628-PB | 175 | CG9628-PB | 14..175 | 1..162 | 844 | 100 | Plus |