Clone BO04071 Report

Search the DGRC for BO04071

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG3226-RA
Protein status:BO04071.pep: validated full length
Sequenced Size:724

Clone Sequence Records

BO04071.3prime Sequence

722 bp (721 high quality bases) assembled on 2005-12-01

> BO04071.3prime
ATGGTCTAGAAAGCTTGCAAGATCGTCGAAAGAATCCAATCCGCCGCCCG
TCTCCTTGCCAAGCTTCGCCTTATCCTGACTCTCGGTCCAAGCTTTGGCG
ATCATCTGCTTCGTCTTGGAGTCACCGTCGTTGTACATCTTCTTCATGAT
GTTAACAAGCGCCGATTCGGGATTGTCGCCATCTTTGGACAATTCGCTGT
CCTTCTTTTGCTTCAAACGCTTCTGGATAGCGGTGAGCACATCCCAGTGC
TTGTCCTCAACCTTCTGCAGATAGATGGCCACCATGTCGGTCTTGATCTT
TCGGTAGCTCTTCTCCACATCGATACTGTGCAGCAGATTGTTTACGGTCA
GCCCAAAGTCCTTGCCCTGAAGATCGCGCACATGGAGCTGCAACGAGTTA
GGTGTGTAGGTGACTGTCACATTCTCCTCCGTGCAGCCCTGCACTCCGTT
CAAGGTGATGAAGAGCTTCACGAACTTGGCGCTCTGGTCCCAGCCGTAGT
CGGTCAGCTCGTGCAGATATCTCTTGGCTTCGCTCGACCCGGTGGCCTGT
CGCTCTGCCGCAATTTTGGCCTTCAACTCCAGATTGACAATCTCCCGTTC
CGCCTCCGCTTTAGCGGTGGTCAGCACGTCTTTTACGCGGGCACCTTTCG
CCTGCTGCAGGAAGGCCGCCAGCTCGGCCACATCGCTTTTCAGCTGTTCC
AATGACATGTCGACTGATAACT

BO04071.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-PA 693 CG3226-RA 1..690 708..19 3450 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-RA 894 CG3226-RA 89..778 708..19 3450 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6653229..6653732 19..522 2520 100 Plus
X 23542271 X 6653908..6654084 521..697 885 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:41:26 has no hits.

BO04071.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:49 Download gff for BO04071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-PA 1..693 18..708 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:33 Download gff for BO04071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-PA 1..693 18..708 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:39:47 Download gff for BO04071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 89..778 19..708 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:23 Download gff for BO04071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 89..778 19..708 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:23 Download gff for BO04071.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6653229..6653730 19..520 100 <- Plus
X 6653908..6654084 521..697 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:39:47 Download gff for BO04071.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6547262..6547763 19..520 100 <- Plus
arm_X 6547941..6548117 521..697 100   Plus

BO04071.5prime Sequence

722 bp (721 high quality bases) assembled on 2005-12-01

> BO04071.5prime
GAAGTTATCAGTCGACATGTCATTGGAACAGCTGAAAAGCGATGTGGCCG
AGCTGGCGGCCTTCCTGCAGCAGGCGAAAGGTGCCCGCGTAAAAGACGTG
CTGACCACCGCTAAAGCGGAGGCGGAACGGGAGATTGTCAATCTGGAGTT
GAAGGCCAAAATTGCGGCAGAGCGACAGGCCACCGGGTCGAGCGAAGCCA
AGAGATATCTGCACGAGCTGACCGACTACGGCTGGGACCAGAGCGCCAAG
TTCGTGAAGCTCTTCATCACCTTGAACGGAGTGCAGGGCTGCACGGAGGA
GAATGTGACAGTCACCTACACACCTAACTCGTTGCAGCTCCATGTGCGCG
ATCTTCAGGGCAAGGACTTTGGGCTGACCGTAAACAATCTGCTGCACAGT
ATCGATGTGGAGAAGAGCTACCGAAAGATCAAGACCGACATGGTGGCCAT
CTATCTGCAGAAGGTTGAGGACAAGCACTGGGATGTGCTCACCGCTATCC
AGAAGCGTTTGAAGCAAAAGAAGGACAGCGAATTGTCCAAAGATGGCGAC
AATCCCGAATCGGCGCTTGTTAACATCATGAAGAAGATGTACAACGACGG
TGACTCCAAGACGAAGCAGATGATCGCCAAAGCTTGGACCGAGAGTCAGG
ATAAGGCGAAGCTTGGCAAGGAGACGGGCGGCGGATTGGATTCTTTCGAC
GATCTTGCAAGCTTTCTAGACC

BO04071.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-PA 693 CG3226-RA 1..690 17..706 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-RA 894 CG3226-RA 89..778 17..706 3450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6653229..6653732 706..203 2520 100 Minus
X 23542271 X 6653908..6654084 204..28 885 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:58:49 has no hits.

BO04071.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:50 Download gff for BO04071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-PA 1..693 17..707 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:35 Download gff for BO04071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-PA 1..693 17..707 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:35 Download gff for BO04071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 89..778 17..706 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:12 Download gff for BO04071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 89..778 17..706 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:12 Download gff for BO04071.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6653908..6654084 28..204 100   Minus
X 6653229..6653730 205..706 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:35 Download gff for BO04071.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6547262..6547763 205..706 100 <- Minus
arm_X 6547941..6548117 28..204 100   Minus

BO04071.complete Sequence

724 bp (724 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629627

> BO04071.complete
GAAGTTATCAGTCGACATGTCATTGGAACAGCTGAAAAGCGATGTGGCCG
AGCTGGCGGCCTTCCTGCAGCAGGCGAAAGGTGCCCGCGTAAAAGACGTG
CTGACCACCGCTAAAGCGGAGGCGGAACGGGAGATTGTCAATCTGGAGTT
GAAGGCCAAAATTGCGGCAGAGCGACAGGCCACCGGGTCGAGCGAAGCCA
AGAGATATCTGCACGAGCTGACCGACTACGGCTGGGACCAGAGCGCCAAG
TTCGTGAAGCTCTTCATCACCTTGAACGGAGTGCAGGGCTGCACGGAGGA
GAATGTGACAGTCACCTACACACCTAACTCGTTGCAGCTCCATGTGCGCG
ATCTTCAGGGCAAGGACTTTGGGCTGACCGTAAACAATCTGCTGCACAGT
ATCGATGTGGAGAAGAGCTACCGAAAGATCAAGACCGACATGGTGGCCAT
CTATCTGCAGAAGGTTGAGGACAAGCACTGGGATGTGCTCACCGCTATCC
AGAAGCGTTTGAAGCAAAAGAAGGACAGCGAATTGTCCAAAGATGGCGAC
AATCCCGAATCGGCGCTTGTTAACATCATGAAGAAGATGTACAACGACGG
TGACTCCAAGACGAAGCAGATGATCGCCAAAGCTTGGACCGAGAGTCAGG
ATAAGGCGAAGCTTGGCAAGGAGACGGGCGGCGGATTGGATTCTTTCGAC
GATCTTGCAAGCTTTCTAGACCAT

BO04071.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-RA 693 CG3226-PA 1..690 17..706 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-RA 894 CG3226-RA 89..778 17..706 3450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6653229..6653732 706..203 2520 100 Minus
X 23542271 X 6653908..6654084 204..28 885 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:48:36 has no hits.

BO04071.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:49 Download gff for BO04071.complete
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 1..693 17..707 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:46 Download gff for BO04071.complete
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 27..716 17..706 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:22 Download gff for BO04071.complete
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 89..778 17..708 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:50 Download gff for BO04071.complete
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 27..716 17..706 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:39 Download gff for BO04071.complete
Subject Subject Range Query Range Percent Splice Strand
CG3226-RA 89..778 17..708 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:39 Download gff for BO04071.complete
Subject Subject Range Query Range Percent Splice Strand
X 6653908..6654084 28..204 100   Minus
X 6653227..6653730 205..708 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:22 Download gff for BO04071.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6547260..6547763 205..708 99 <- Minus
arm_X 6547941..6548117 28..204 100   Minus

BO04071.pep Sequence

Translation from 16 to 724

> BO04071.pep
MSLEQLKSDVAELAAFLQQAKGARVKDVLTTAKAEAEREIVNLELKAKIA
AERQATGSSEAKRYLHELTDYGWDQSAKFVKLFITLNGVQGCTEENVTVT
YTPNSLQLHVRDLQGKDFGLTVNNLLHSIDVEKSYRKIKTDMVAIYLQKV
EDKHWDVLTAIQKRLKQKKDSELSKDGDNPESALVNIMKKMYNDGDSKTK
QMIAKAWTESQDKAKLGKETGGGLDSFDDLASFLDH

BO04071.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3226-PA 230 CG3226-PA 1..230 1..230 1163 100 Plus