Clone Sequence Records
BO04071.3prime Sequence
722 bp (721 high quality bases) assembled on 2005-12-01
> BO04071.3prime
ATGGTCTAGAAAGCTTGCAAGATCGTCGAAAGAATCCAATCCGCCGCCCG
TCTCCTTGCCAAGCTTCGCCTTATCCTGACTCTCGGTCCAAGCTTTGGCG
ATCATCTGCTTCGTCTTGGAGTCACCGTCGTTGTACATCTTCTTCATGAT
GTTAACAAGCGCCGATTCGGGATTGTCGCCATCTTTGGACAATTCGCTGT
CCTTCTTTTGCTTCAAACGCTTCTGGATAGCGGTGAGCACATCCCAGTGC
TTGTCCTCAACCTTCTGCAGATAGATGGCCACCATGTCGGTCTTGATCTT
TCGGTAGCTCTTCTCCACATCGATACTGTGCAGCAGATTGTTTACGGTCA
GCCCAAAGTCCTTGCCCTGAAGATCGCGCACATGGAGCTGCAACGAGTTA
GGTGTGTAGGTGACTGTCACATTCTCCTCCGTGCAGCCCTGCACTCCGTT
CAAGGTGATGAAGAGCTTCACGAACTTGGCGCTCTGGTCCCAGCCGTAGT
CGGTCAGCTCGTGCAGATATCTCTTGGCTTCGCTCGACCCGGTGGCCTGT
CGCTCTGCCGCAATTTTGGCCTTCAACTCCAGATTGACAATCTCCCGTTC
CGCCTCCGCTTTAGCGGTGGTCAGCACGTCTTTTACGCGGGCACCTTTCG
CCTGCTGCAGGAAGGCCGCCAGCTCGGCCACATCGCTTTTCAGCTGTTCC
AATGACATGTCGACTGATAACT
BO04071.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3226-PA | 693 | CG3226-RA | 1..690 | 708..19 | 3450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3226-RA | 894 | CG3226-RA | 89..778 | 708..19 | 3450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6653229..6653732 | 19..522 | 2520 | 100 | Plus |
X | 23542271 | X | 6653908..6654084 | 521..697 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:41:26 has no hits.
BO04071.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:49 Download gff for
BO04071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-PA | 1..693 | 18..708 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:33 Download gff for
BO04071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-PA | 1..693 | 18..708 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:39:47 Download gff for
BO04071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 89..778 | 19..708 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:23 Download gff for
BO04071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 89..778 | 19..708 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:23 Download gff for
BO04071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6653229..6653730 | 19..520 | 100 | <- | Plus |
X | 6653908..6654084 | 521..697 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:39:47 Download gff for
BO04071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6547262..6547763 | 19..520 | 100 | <- | Plus |
arm_X | 6547941..6548117 | 521..697 | 100 | | Plus |
BO04071.5prime Sequence
722 bp (721 high quality bases) assembled on 2005-12-01
> BO04071.5prime
GAAGTTATCAGTCGACATGTCATTGGAACAGCTGAAAAGCGATGTGGCCG
AGCTGGCGGCCTTCCTGCAGCAGGCGAAAGGTGCCCGCGTAAAAGACGTG
CTGACCACCGCTAAAGCGGAGGCGGAACGGGAGATTGTCAATCTGGAGTT
GAAGGCCAAAATTGCGGCAGAGCGACAGGCCACCGGGTCGAGCGAAGCCA
AGAGATATCTGCACGAGCTGACCGACTACGGCTGGGACCAGAGCGCCAAG
TTCGTGAAGCTCTTCATCACCTTGAACGGAGTGCAGGGCTGCACGGAGGA
GAATGTGACAGTCACCTACACACCTAACTCGTTGCAGCTCCATGTGCGCG
ATCTTCAGGGCAAGGACTTTGGGCTGACCGTAAACAATCTGCTGCACAGT
ATCGATGTGGAGAAGAGCTACCGAAAGATCAAGACCGACATGGTGGCCAT
CTATCTGCAGAAGGTTGAGGACAAGCACTGGGATGTGCTCACCGCTATCC
AGAAGCGTTTGAAGCAAAAGAAGGACAGCGAATTGTCCAAAGATGGCGAC
AATCCCGAATCGGCGCTTGTTAACATCATGAAGAAGATGTACAACGACGG
TGACTCCAAGACGAAGCAGATGATCGCCAAAGCTTGGACCGAGAGTCAGG
ATAAGGCGAAGCTTGGCAAGGAGACGGGCGGCGGATTGGATTCTTTCGAC
GATCTTGCAAGCTTTCTAGACC
BO04071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3226-PA | 693 | CG3226-RA | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3226-RA | 894 | CG3226-RA | 89..778 | 17..706 | 3450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6653229..6653732 | 706..203 | 2520 | 100 | Minus |
X | 23542271 | X | 6653908..6654084 | 204..28 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:58:49 has no hits.
BO04071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:50 Download gff for
BO04071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-PA | 1..693 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:35 Download gff for
BO04071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-PA | 1..693 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:35 Download gff for
BO04071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 89..778 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:12 Download gff for
BO04071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 89..778 | 17..706 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:12 Download gff for
BO04071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6653908..6654084 | 28..204 | 100 | | Minus |
X | 6653229..6653730 | 205..706 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:35 Download gff for
BO04071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6547262..6547763 | 205..706 | 100 | <- | Minus |
arm_X | 6547941..6548117 | 28..204 | 100 | | Minus |
BO04071.complete Sequence
724 bp (724 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629627
> BO04071.complete
GAAGTTATCAGTCGACATGTCATTGGAACAGCTGAAAAGCGATGTGGCCG
AGCTGGCGGCCTTCCTGCAGCAGGCGAAAGGTGCCCGCGTAAAAGACGTG
CTGACCACCGCTAAAGCGGAGGCGGAACGGGAGATTGTCAATCTGGAGTT
GAAGGCCAAAATTGCGGCAGAGCGACAGGCCACCGGGTCGAGCGAAGCCA
AGAGATATCTGCACGAGCTGACCGACTACGGCTGGGACCAGAGCGCCAAG
TTCGTGAAGCTCTTCATCACCTTGAACGGAGTGCAGGGCTGCACGGAGGA
GAATGTGACAGTCACCTACACACCTAACTCGTTGCAGCTCCATGTGCGCG
ATCTTCAGGGCAAGGACTTTGGGCTGACCGTAAACAATCTGCTGCACAGT
ATCGATGTGGAGAAGAGCTACCGAAAGATCAAGACCGACATGGTGGCCAT
CTATCTGCAGAAGGTTGAGGACAAGCACTGGGATGTGCTCACCGCTATCC
AGAAGCGTTTGAAGCAAAAGAAGGACAGCGAATTGTCCAAAGATGGCGAC
AATCCCGAATCGGCGCTTGTTAACATCATGAAGAAGATGTACAACGACGG
TGACTCCAAGACGAAGCAGATGATCGCCAAAGCTTGGACCGAGAGTCAGG
ATAAGGCGAAGCTTGGCAAGGAGACGGGCGGCGGATTGGATTCTTTCGAC
GATCTTGCAAGCTTTCTAGACCAT
BO04071.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3226-RA | 693 | CG3226-PA | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3226-RA | 894 | CG3226-RA | 89..778 | 17..706 | 3450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6653229..6653732 | 706..203 | 2520 | 100 | Minus |
X | 23542271 | X | 6653908..6654084 | 204..28 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:48:36 has no hits.
BO04071.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:49 Download gff for
BO04071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 1..693 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:46 Download gff for
BO04071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 27..716 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:22 Download gff for
BO04071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 89..778 | 17..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:50 Download gff for
BO04071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 27..716 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:39 Download gff for
BO04071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3226-RA | 89..778 | 17..708 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:39 Download gff for
BO04071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6653908..6654084 | 28..204 | 100 | | Minus |
X | 6653227..6653730 | 205..708 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:22 Download gff for
BO04071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6547260..6547763 | 205..708 | 99 | <- | Minus |
arm_X | 6547941..6548117 | 28..204 | 100 | | Minus |
BO04071.pep Sequence
Translation from 16 to 724
> BO04071.pep
MSLEQLKSDVAELAAFLQQAKGARVKDVLTTAKAEAEREIVNLELKAKIA
AERQATGSSEAKRYLHELTDYGWDQSAKFVKLFITLNGVQGCTEENVTVT
YTPNSLQLHVRDLQGKDFGLTVNNLLHSIDVEKSYRKIKTDMVAIYLQKV
EDKHWDVLTAIQKRLKQKKDSELSKDGDNPESALVNIMKKMYNDGDSKTK
QMIAKAWTESQDKAKLGKETGGGLDSFDDLASFLDH
BO04071.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3226-PA | 230 | CG3226-PA | 1..230 | 1..230 | 1163 | 100 | Plus |