Clone Sequence Records
BO04073.5prime Sequence
503 bp (502 high quality bases) assembled on 2005-12-01
> BO04073.5prime
GAAGTTATCAGTCGACATGATGCTTTTCATGCTGCTGTTTAGTCGGCAGG
GCAAACTGCGGTTACAAAAGTGGTACATGGCCTATCCGGATAAGGTGAAA
AAGAAGATCACCCGGGAACTGGTCACTACGATACTGGCCCGCAAGCCCAA
AATGTGCTCCTTTCTGGAGTGGAAGGACTGCAAAATTGTCTACAAAAGGT
ATGCCAGCTTGTATTTCTGTTGCGCCATCGAGCAGAACGACAACGAACTG
CTGACACTGGAGATCATTCATCGCTATGTGGAGCTGTTGGATAAGTACTT
CGGCAGCGTCTGCGAGCTGGACATTATCTTTAACTTTGAAAAAGCATACT
TTATCCTGGATGAGCTGCTCATTGGCGGCGAAATCCAGGAGACGTCCAAA
AAGAACGTACTTAAGGCGATTGCCTCGCAGGATCTGCTCCAAGAGGATGA
GACCCCGCAGAGTTTCTTCGACGATCACGGCCTGGGCGCAAGCTTTCTAG
ACC
BO04073.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5864-PA | 474 | AP-1sigma-RA | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1sigma-RA | 1079 | CG5864-RA | 146..616 | 17..487 | 2355 | 100 | Plus |
AP-1sigma-RC | 795 | CG5864-RC | 146..576 | 17..447 | 2155 | 100 | Plus |
AP-1sigma-RB | 1181 | CG5864-RB | 146..576 | 17..447 | 2155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23959031..23959212 | 19..200 | 910 | 100 | Plus |
3R | 32079331 | 3R | 23959456..23959594 | 308..446 | 695 | 100 | Plus |
3R | 32079331 | 3R | 23959278..23959390 | 197..309 | 565 | 100 | Plus |
3R | 32079331 | 3R | 23962049..23962092 | 444..487 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:59:00 has no hits.
BO04073.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:53 Download gff for
BO04073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5864-PA | 1..474 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:39 Download gff for
BO04073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5864-PA | 1..474 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:37 Download gff for
BO04073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 146..622 | 17..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:31 Download gff for
BO04073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 146..622 | 17..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:31 Download gff for
BO04073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23959456..23959593 | 308..445 | 100 | -> | Plus |
3R | 23962051..23962098 | 446..495 | 94 | | Plus |
3R | 23959027..23959210 | 12..198 | 98 | -> | Plus |
3R | 23959280..23959388 | 199..307 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:37 Download gff for
BO04073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19784749..19784932 | 12..198 | 98 | -> | Plus |
arm_3R | 19785002..19785110 | 199..307 | 100 | -> | Plus |
arm_3R | 19785178..19785315 | 308..445 | 100 | -> | Plus |
arm_3R | 19787773..19787820 | 446..495 | 94 | | Plus |
BO04073.3prime Sequence
503 bp (502 high quality bases) assembled on 2005-12-01
> BO04073.3prime
ATGGTCTAGAAAGCTTGCGCCCAGGCCGTGATCGTCGAAGAAACTCTGCG
GGGTCTCATCCTCTTGGAGCAGATCCTGCGAGGCAATCGCCTTAAGTACG
TTCTTTTTGGACGTCTCCTGGATTTCGCCGCCAATGAGCAGCTCATCCAG
GATAAAGTATGCTTTTTCAAAGTTAAAGATAATGTCCAGCTCGCAGACGC
TGCCGAAGTACTTATCCAACAGCTCCACATAGCGATGAATGATCTCCAGT
GTCAGCAGTTCGTTGTCGTTCTGCTCGATGGCGCAACAGAAATACAAGCT
GGCATACCTTTTGTAGACAATTTTGCAGTCCTTCCACTCCAGAAAGGAGC
ACATTTTGGGCTTGCGGGCCAGTATCGTAGTGACCAGTTCCCGGGTGATC
TTCTTTTTCACCTTATCCGGATAGGCCATGTACCACTTTTGTAACCGCAG
TTTGCCCTGCCGACTAAACAGCAGCATGAAAAGCATCATGTCGACTGATA
ACT
BO04073.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5864-PA | 474 | AP-1sigma-RA | 1..471 | 489..19 | 2355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1sigma-RA | 1079 | CG5864-RA | 146..616 | 489..19 | 2355 | 100 | Minus |
AP-1sigma-RC | 795 | CG5864-RC | 146..576 | 489..59 | 2155 | 100 | Minus |
AP-1sigma-RB | 1181 | CG5864-RB | 146..576 | 489..59 | 2155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23959031..23959212 | 487..306 | 910 | 100 | Minus |
3R | 32079331 | 3R | 23959456..23959594 | 198..60 | 695 | 100 | Minus |
3R | 32079331 | 3R | 23959278..23959390 | 309..197 | 565 | 100 | Minus |
3R | 32079331 | 3R | 23962049..23962092 | 62..19 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:39:26 has no hits.
BO04073.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:52 Download gff for
BO04073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5864-PA | 1..474 | 15..489 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:37 Download gff for
BO04073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5864-PA | 1..474 | 15..489 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:28 Download gff for
BO04073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 146..622 | 11..489 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:26 Download gff for
BO04073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 146..622 | 11..489 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:26 Download gff for
BO04073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23959456..23959593 | 61..198 | 100 | -> | Minus |
3R | 23962051..23962098 | 11..60 | 94 | | Minus |
3R | 23959027..23959210 | 308..494 | 98 | -> | Minus |
3R | 23959280..23959388 | 199..307 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:28 Download gff for
BO04073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19785002..19785110 | 199..307 | 100 | -> | Minus |
arm_3R | 19784749..19784932 | 308..494 | 98 | -> | Minus |
arm_3R | 19785178..19785315 | 61..198 | 100 | -> | Minus |
arm_3R | 19787773..19787820 | 11..60 | 94 | | Minus |
BO04073.complete Sequence
505 bp (505 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629628
> BO04073.complete
GAAGTTATCAGTCGACATGATGCTTTTCATGCTGCTGTTTAGTCGGCAGG
GCAAACTGCGGTTACAAAAGTGGTACATGGCCTATCCGGATAAGGTGAAA
AAGAAGATCACCCGGGAACTGGTCACTACGATACTGGCCCGCAAGCCCAA
AATGTGCTCCTTTCTGGAGTGGAAGGACTGCAAAATTGTCTACAAAAGGT
ATGCCAGCTTGTATTTCTGTTGCGCCATCGAGCAGAACGACAACGAACTG
CTGACACTGGAGATCATTCATCGCTATGTGGAGCTGTTGGATAAGTACTT
CGGCAGCGTCTGCGAGCTGGACATTATCTTTAACTTTGAAAAAGCATACT
TTATCCTGGATGAGCTGCTCATTGGCGGCGAAATCCAGGAGACGTCCAAA
AAGAACGTACTTAAGGCGATTGCCTCGCAGGATCTGCTCCAAGAGGATGA
GACCCCGCAGAGTTTCTTCGACGATCACGGCCTGGGCGCAAGCTTTCTAG
ACCAT
BO04073.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1sigma-RA | 474 | CG5864-PA | 1..471 | 17..487 | 2355 | 100 | Plus |
AP-1sigma-RC | 474 | CG5864-PC | 1..431 | 17..447 | 2155 | 100 | Plus |
AP-1sigma-RB | 474 | CG5864-PB | 1..431 | 17..447 | 2155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1sigma-RA | 1079 | CG5864-RA | 146..616 | 17..487 | 2355 | 100 | Plus |
AP-1sigma-RC | 795 | CG5864-RC | 146..576 | 17..447 | 2155 | 100 | Plus |
AP-1sigma-RB | 1181 | CG5864-RB | 146..576 | 17..447 | 2155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23959031..23959212 | 19..200 | 910 | 100 | Plus |
3R | 32079331 | 3R | 23959456..23959594 | 308..446 | 695 | 100 | Plus |
3R | 32079331 | 3R | 23959278..23959390 | 197..309 | 565 | 100 | Plus |
3R | 32079331 | 3R | 23962049..23962092 | 444..487 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:04:45 has no hits.
BO04073.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:25 Download gff for
BO04073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 1..474 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:46 Download gff for
BO04073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 143..619 | 17..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:04 Download gff for
BO04073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 146..616 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:25 Download gff for
BO04073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 143..619 | 17..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:04 Download gff for
BO04073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RA | 146..616 | 17..489 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:04 Download gff for
BO04073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23962051..23962092 | 446..489 | 95 | | Plus |
3R | 23959456..23959593 | 308..445 | 100 | -> | Plus |
3R | 23959030..23959210 | 17..198 | 99 | -> | Plus |
3R | 23959280..23959388 | 199..307 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:04 Download gff for
BO04073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19787773..19787814 | 446..489 | 95 | | Plus |
arm_3R | 19785178..19785315 | 308..445 | 100 | -> | Plus |
arm_3R | 19784752..19784932 | 17..198 | 99 | -> | Plus |
arm_3R | 19785002..19785110 | 199..307 | 100 | -> | Plus |
BO04073.pep Sequence
Translation from 16 to 505
> BO04073.pep
MMLFMLLFSRQGKLRLQKWYMAYPDKVKKKITRELVTTILARKPKMCSFL
EWKDCKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCE
LDIIFNFEKAYFILDELLIGGEIQETSKKNVLKAIASQDLLQEDETPQSF
FDDHGLGASFLDH
BO04073.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1sigma-PA | 157 | CG5864-PA | 1..157 | 1..157 | 821 | 100 | Plus |
AP-1sigma-PC | 157 | CG5864-PC | 1..156 | 1..156 | 761 | 94.9 | Plus |
AP-1sigma-PB | 157 | CG5864-PB | 1..156 | 1..156 | 761 | 94.9 | Plus |
AP-1sigma-PD | 152 | CG5864-PD | 1..145 | 1..145 | 746 | 99.3 | Plus |
AP-2sigma-PA | 142 | CG6056-PA | 1..142 | 1..142 | 366 | 46.5 | Plus |