Clone Sequence Records
BO04074.3prime Sequence
749 bp (629 high quality bases) assembled on 2005-12-01
> BO04074.3prime
ATGGTCTAGAAAGCTTGCTAATTCCGGAACGTACTCGAATCCGGGATTAT
TGTACTTGAAGCGGGCTATCTTAAAGTGCAGCGATGCCTCGTGTATGTCC
GAAATGCGTTTCAGCTGCTCCTGGATTTTCTCTCCATAGAAGGCAGACGG
TTCTTTCGCGGCAGATTGATCAGATGTGACATCCGCGACTTCGTAGATAA
TCTCACTGGAACCATCGAGCCTTAGCTTTTTCGCGGCACTGTGACCATTG
ATGATCGTTGGGTTGGCTTGCTCGTGAGGCTCTGCTATGAACTGCTGGTA
CTGCACCTCCTCCTCCTCCTCCTCATCCACCAACTCCTCCAGGTTCTCAT
TCTCTTCTTCATCCAGTTCCTCTTGCTCCTCCATCAGTTCGTGCAGGCGC
ATCGAAATTCCCTCGCGAAAATTCGGTTCTAAGGAGAAGATCTGCAGGGC
TCTGTTCTCCAGAGGAGTCATTGCATTGCTCTTGTCATCCGAGTTGATGC
TGCGTCGGTATTTGGAGCGCGTGCTGTTCTTCCAGTCGTTGAGGCGCTTT
CGCCATTCCTCGGGCGACAAAGTGGGACCCGTGGAGCACTTGTTTAGCAG
ATCGCTGAGCTCCTTCCACTTCTTGCCGTCCTGGGTGCGACTCAGTTTGT
TGGCCGACATCGGGGGATTCTCCTCCATGAAGTCTAGGTATACTTCGTAT
TGGTAGTACGACGTCCGCTTGTTGCGTCGATTCATGTCGACTGATAACT
BO04074.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15107-PA | 720 | CG15107-RA | 1..717 | 735..19 | 3585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:51:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15107-RA | 1106 | CG15107-RA | 105..821 | 735..19 | 3585 | 100 | Minus |
| CG15107-RB | 1118 | CG15107-RB | 105..833 | 735..19 | 3455 | 98.4 | Minus |
| prod-RA | 1597 | CG18608-RA | 260..386 | 625..499 | 290 | 81.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18971829..18972188 | 189..548 | 1800 | 100 | Plus |
| 2R | 25286936 | 2R | 18972245..18972433 | 547..735 | 945 | 100 | Plus |
| 2R | 25286936 | 2R | 18971594..18971765 | 19..190 | 860 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:51:23 has no hits.
BO04074.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:54 Download gff for
BO04074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-PA | 1..720 | 18..735 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:40 Download gff for
BO04074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-PA | 1..720 | 18..735 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:29 Download gff for
BO04074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-RA | 105..825 | 13..735 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:12 Download gff for
BO04074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-RA | 105..825 | 13..735 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:12 Download gff for
BO04074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18971590..18971763 | 13..188 | 98 | <- | Plus |
| 2R | 18971829..18972186 | 189..546 | 100 | <- | Plus |
| 2R | 18972245..18972433 | 547..735 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:29 Download gff for
BO04074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14859095..14859268 | 13..188 | 98 | <- | Plus |
| arm_2R | 14859334..14859691 | 189..546 | 100 | <- | Plus |
| arm_2R | 14859750..14859938 | 547..735 | 100 | | Plus |
BO04074.5prime Sequence
750 bp (435 high quality bases) assembled on 2005-12-01
> BO04074.5prime
GAAGTTATCAGTCGACATGAATCGACGCAACAAGCGGACGTCGTACTACC
AATACGAAGTATACCTAGACTTCATGGAGGAGAATCCCCCGATGTCGGCC
AACAAACTGAGTCGCACCCAGGACGGCAAGAAGTGGAAGGAGCTCAGCGA
TCTGCTAAACAAGTGCTCCACGGGTCCCACTTTGTCGCCCGAGGAATGGC
GAAAGCGCCTCAACGACTGGAAGAACAGCACGCGCTCCAAATACCGACGC
AGCATCAACTCGGATGACAAGAGCAATGCAATGACTCCTCTGGAGAACAG
AGCCCTGCAGATCTTCTCCTTAGAACCGAATTTTCGCGAGGGAATTTCGA
TGCGCCTGCACGAACTGATGGAGGAGCAAGAGGAACTGGATGAAGAAGAG
AATGAGAACCTGGAGGAGTTGGTGGATGAGGAGGAGGAGAGAGGAGGTGC
AGTACCAGCAGTTCATAGCAGAGCCTCACGAGCAAGCCAACCCAACGATC
ATCAATGGTCACAGTGCCGCGAAAAAGCTAAGGCTCGATGGTTCCAGTGA
GATTATCTACGAAGTCGCGGATGTCACATCTGATCAATCTGCCGCGAAAG
AACCGTCTGCCTTCTATGGAGAGAAAATCCAGGAGCAGCTGAAACGCATT
TCGGACATACACGAGGCATCGCTGCACTTTAAGATAGCCCGCTTCAAGTA
CAATAATCCCGGATTCGAGTACGTTCCGGAATTAGCAAGCTTTCTAGACC
BO04074.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15107-PA | 720 | CG15107-RA | 1..423 | 17..439 | 2115 | 100 | Plus |
| CG15107-PA | 720 | CG15107-RA | 424..717 | 441..734 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15107-RA | 1106 | CG15107-RA | 105..821 | 17..734 | 3565 | 99.9 | Plus |
| CG15107-RB | 1118 | CG15107-RB | 105..833 | 17..734 | 3435 | 98.2 | Plus |
| prod-RA | 1597 | CG18608-RA | 260..386 | 127..253 | 290 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18971829..18972188 | 564..204 | 1755 | 99.7 | Minus |
| 2R | 25286936 | 2R | 18972245..18972433 | 205..17 | 945 | 100 | Minus |
| 2R | 25286936 | 2R | 18971594..18971765 | 734..563 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:14:16 has no hits.
BO04074.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:55 Download gff for
BO04074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-PA | 1..720 | 17..735 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:42 Download gff for
BO04074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-PA | 1..720 | 17..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:11 Download gff for
BO04074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-RA | 105..825 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:54:12 Download gff for
BO04074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-RA | 105..825 | 17..740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:54:12 Download gff for
BO04074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18971590..18971763 | 565..740 | 98 | <- | Minus |
| 2R | 18971829..18972186 | 206..564 | 99 | <- | Minus |
| 2R | 18972245..18972433 | 17..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:11 Download gff for
BO04074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14859095..14859268 | 565..740 | 98 | <- | Minus |
| arm_2R | 14859334..14859691 | 206..564 | 99 | <- | Minus |
| arm_2R | 14859750..14859938 | 17..205 | 100 | | Minus |
BO04074.complete Sequence
751 bp (751 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629629
> BO04074.complete
GAAGTTATCAGTCGACATGAATCGACGCAACAAGCGGACGTCGTACTACC
AATACGAAGTATACCTAGACTTCATGGAGGAGAATCCCCCGATGTCGGCC
AACAAACTGAGTCGCACCCAGGACGGCAAGAAGTGGAAGGAGCTCAGCGA
TCTGCTAAACAAGTGCTCCACGGGTCCCACTTTGTCGCCCGAGGAATGGC
GAAAGCGCCTCAACGACTGGAAGAACAGCACGCGCTCCAAATACCGACGC
AGCATCAACTCGGATGACAAGAGCAATGCAATGACTCCTCTGGAGAACAG
AGCCCTGCAGATCTTCTCCTTAGAACCGAATTTTCGCGAGGGAATTTCGA
TGCGCCTGCACGAACTGATGGAGGAGCAAGAGGAACTGGATGAAGAAGAG
AATGAGAACCTGGAGGAGTTGGTGGATGAGGAGGAGGAGGAGGAGGTGCA
GTACCAGCAGTTCATAGCAGAGCCTCACGAGCAAGCCAACCCAACGATCA
TCAATGGTCACAGTGCCGCGAAAAAGCTAAGGCTCGATGGTTCCAGTGAG
ATTATCTACGAAGTCGCGGATGTCACATCTGATCAATCTGCCGCGAAAGA
ACCGTCTGCCTTCTATGGAGAGAAAATCCAGGAGCAGCTGAAACGCATTT
CGGACATACACGAGGCATCGCTGCACTTTAAGATAGCCCGCTTCAAGTAC
AATAATCCCGGATTCGAGTACGTTCCGGAATTAGCAAGCTTTCTAGACCA
T
BO04074.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15107-RA | 720 | CG15107-PA | 1..717 | 17..733 | 3585 | 100 | Plus |
| CG15107-RB | 732 | CG15107-PB | 1..729 | 17..733 | 3430 | 98.4 | Plus |
| prod-RA | 1041 | CG18608-PA | 135..261 | 127..253 | 290 | 81.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15107-RA | 1106 | CG15107-RA | 105..821 | 17..733 | 3585 | 100 | Plus |
| CG15107-RB | 1118 | CG15107-RB | 105..833 | 17..733 | 3430 | 98.4 | Plus |
| prod-RA | 1597 | CG18608-RA | 260..386 | 127..253 | 290 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18971829..18972188 | 563..204 | 1800 | 100 | Minus |
| 2R | 25286936 | 2R | 18972245..18972433 | 205..17 | 945 | 100 | Minus |
| 2R | 25286936 | 2R | 18971594..18971765 | 733..562 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:04:01 has no hits.
BO04074.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:26 Download gff for
BO04074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-RA | 1..720 | 17..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:49 Download gff for
BO04074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-RA | 2..726 | 13..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:54 Download gff for
BO04074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-RA | 105..821 | 17..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:27 Download gff for
BO04074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-RA | 2..726 | 13..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:49 Download gff for
BO04074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-RA | 105..821 | 17..735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:49 Download gff for
BO04074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18972245..18972433 | 17..205 | 100 | | Minus |
| 2R | 18971590..18971763 | 564..735 | 98 | <- | Minus |
| 2R | 18971829..18972186 | 206..563 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:54 Download gff for
BO04074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14859334..14859691 | 206..563 | 100 | <- | Minus |
| arm_2R | 14859095..14859268 | 564..735 | 98 | <- | Minus |
| arm_2R | 14859750..14859938 | 17..205 | 100 | | Minus |
BO04074.pep Sequence
Translation from 16 to 751
> BO04074.pep
MNRRNKRTSYYQYEVYLDFMEENPPMSANKLSRTQDGKKWKELSDLLNKC
STGPTLSPEEWRKRLNDWKNSTRSKYRRSINSDDKSNAMTPLENRALQIF
SLEPNFREGISMRLHELMEEQEELDEEENENLEELVDEEEEEEVQYQQFI
AEPHEQANPTIINGHSAAKKLRLDGSSEIIYEVADVTSDQSAAKEPSAFY
GEKIQEQLKRISDIHEASLHFKIARFKYNNPGFEYVPELASFLDH
BO04074.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15107-PA | 239 | CG15107-PA | 1..239 | 1..239 | 1246 | 100 | Plus |
| CG15107-PB | 243 | CG15107-PB | 1..243 | 1..239 | 1231 | 98.4 | Plus |
| prod-PA | 346 | CG18608-PA | 5..343 | 1..237 | 414 | 33.6 | Plus |
