Clone Sequence Records
BO04076.3prime Sequence
819 bp (748 high quality bases) assembled on 2005-12-01
> BO04076.3prime
ATGGTCTAGAAAGCTTGCGTAGGCTGGCCTTATCATGGGCTTCCCTTCGA
TGGCGTTCAAAATATTATTGGCAGCAAGCAATCCCATTTCAATGGTAGTC
TTCATTGTCTGAGTGCCCATATGGGGAAGGATAACACAATTGGGCACATT
GAGAAGAGGACTATTGGCGGGCAGTGGTTCTGGTGTGGTCACATCCAAGC
CTGCGGCAGAAATTGTACCATTTGTCAGGGCGTCATGAAGGTCAGTTTGA
TTTACCAGACCTCCTCTGGCCACATTGACAAACACAGAACTCCTCTTCAT
CAGATTAAATGCCTTTCCATTGAATTTCTCTCTAGTTTCGTTTGTAAGTG
GAGCAGCTACCACCAGGAAGTCACTTTCTTGTAAAAGTTGTTCAAACGAC
ACATGCTCTGCCTTGAAGTCGCCATCGTTTTCCTTTCGGGTGCGAGTATG
GTAGATGATCTTGGCCACATCCCAGCACTGCAATCGCTTGGCGATGGCCT
GACTAATACCGCCAAAGCCAAAGAAACCGATGACGGAATCGCGAATCTCT
TGACCCATCATCCAGTTGATCTGCTCGATTTTCCATTGGGACCTCTCGAT
TTCGGTGCGACCGGCATGAAAGTGACGACCGGCTGCAATCATCAAGCCAA
TGGCGAGATCGGCCACTGCATTTTTCACCACCCCGGGAGTGTGGCCCAAT
GGGATTCCCCTCTTCTGGAACTCCGGAATATCCACAAAATCGATTCCGGA
GGACATGGTGCTCACGCAACGCAGCTGGGATCCAGCAGCATCCAGGATTC
CGGCATTCAGGGGCTGGTA
BO04076.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-PA | 981 | CG31673-RA | 178..978 | 819..19 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-RA | 1126 | CG31673-RA | 239..1039 | 819..19 | 4005 | 100 | Minus |
CG31673-RB | 1221 | CG31673-RB | 239..1036 | 819..19 | 3950 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:09:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20830279..20830614 | 594..259 | 1680 | 100 | Minus |
2L | 23513712 | 2L | 20829847..20830075 | 819..591 | 1145 | 100 | Minus |
2L | 23513712 | 2L | 20830669..20830796 | 262..135 | 640 | 100 | Minus |
2L | 23513712 | 2L | 20830860..20830976 | 135..19 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:09:10 has no hits.
BO04076.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:57 Download gff for
BO04076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-PA | 179..981 | 16..818 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:45 Download gff for
BO04076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-PA | 179..981 | 16..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:00:40 Download gff for
BO04076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 240..1039 | 19..818 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:44:41 Download gff for
BO04076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 240..1039 | 19..818 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:44:41 Download gff for
BO04076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20830861..20830976 | 19..134 | 100 | | Minus |
2L | 20829848..20830073 | 593..818 | 100 | -> | Minus |
2L | 20830281..20830612 | 261..592 | 100 | -> | Minus |
2L | 20830671..20830796 | 135..260 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:00:40 Download gff for
BO04076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20829848..20830073 | 593..818 | 100 | -> | Minus |
arm_2L | 20830281..20830612 | 261..592 | 100 | -> | Minus |
arm_2L | 20830671..20830796 | 135..260 | 100 | -> | Minus |
arm_2L | 20830861..20830976 | 19..134 | 100 | | Minus |
BO04076.5prime Sequence
859 bp (807 high quality bases) assembled on 2005-12-01
> BO04076.5prime
GAAGTTATCAGTCGACATGTCTCGTGCGACCAGGGCTTTTAAAGTGCTGA
TTTCGCATCCAAATGTCCCAGCACCGGCTCTGGAACTGCTCCGATCCCGT
GGAGCGGAGACCATCATCTGCCAGAGTGTGCCGCCCTCGAGGGATGAGAT
CCTGCAGAAGGTGCCCGGCGTGGATGCCATCTATTGGGCCCATTACCAGC
CCCTGAATGCCGGAATCCTGGATGCTGCTGGATCCCAGCTGCGTTGCGTG
AGCACCATGTCCTCCGGAATCGATTTTGTGGATATTCCGGAGTTCCAGAA
GAGGGGAATCCCATTGGGCCACACTCCCGGGGTGGTGAAAAATGCAGTGG
CCGATCTCGCCATTGGCTTGATGATTGCAGCCGGTCGTCACTTTCATGCC
GGTCGCACCGAAATCGAGAGGTCCCAATGGAAAATCGAGCAGATCAACTG
GATGATGGGTCAAGAGATTCGCGATTCCGTCATCGGTTTCTTTGGCTTTG
GCGGTATTAGTCAGGCCATCGCCAAGCGATTGCAGTGCTGGGATGTGGCC
AAGATCATCTACCATACTCGCACCCGAAAGGAAAACGATGGCGACTTCAA
GGCAGAGCATGTGTCGTTTGAACAACTTTTACAAGAAAGTGACTTCCTGG
TGGTAGCTGCTCCACTTACAAACGAAACTAGAGAGAAATTCAATGGAAAG
GCATTTAATCTGATGAAGAGGAGTTCTGTGTTTGTCAATGTGGCCAGAGG
AGGTCTGGTAAATCAAACTGACCTTCATGACGCCCTGACAAATGGTACAA
TTTCTGCCGCAGGCTTGGATGTGACCACACCAGAACCACTGCCCCGCCAT
AGTCCTCTT
BO04076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-PA | 981 | CG31673-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-RB | 1221 | CG31673-RB | 58..904 | 13..859 | 4175 | 99.6 | Plus |
CG31673-RA | 1126 | CG31673-RA | 58..904 | 13..859 | 4175 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20829666..20830075 | 13..422 | 2035 | 99.8 | Plus |
2L | 23513712 | 2L | 20830279..20830614 | 419..754 | 1680 | 100 | Plus |
2L | 23513712 | 2L | 20830669..20830777 | 751..859 | 500 | 97.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:59:08 has no hits.
BO04076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:58 Download gff for
BO04076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:47 Download gff for
BO04076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:39 Download gff for
BO04076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 53..904 | 8..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:43 Download gff for
BO04076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 53..904 | 8..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:43 Download gff for
BO04076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20829661..20830073 | 8..420 | 99 | -> | Plus |
2L | 20830281..20830612 | 421..752 | 100 | -> | Plus |
2L | 20830671..20830777 | 753..859 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:39 Download gff for
BO04076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20829661..20830073 | 8..420 | 99 | -> | Plus |
arm_2L | 20830281..20830612 | 421..752 | 100 | -> | Plus |
arm_2L | 20830671..20830777 | 753..859 | 98 | | Plus |
BO04076.complete Sequence
1012 bp (1012 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629630
> BO04076.complete
GAAGTTATCAGTCGACATGTCTCGTGCGACCAGGGCTTTTAAAGTGCTGA
TTTCGCATCCAAATGTCCCAGCACCGGCTCTGGAACTGCTCCGATCCCGT
GGAGCGGAGACCATCATCTGCCAGAGTGTGCCGCCCTCGAGGGATGAGAT
CCTGCAGAAGGTGCCCGGCGTGGATGCCATCTATTGGGCCCATTACCAGC
CCCTGAATGCCGGAATCCTGGATGCTGCTGGATCCCAGCTGCGTTGCGTG
AGCACCATGTCCTCCGGAATCGATTTTGTGGATATTCCGGAGTTCCAGAA
GAGGGGAATCCCATTGGGCCACACTCCCGGGGTGGTGAAAAATGCAGTGG
CCGATCTCGCCATTGGCTTGATGATTGCAGCCGGTCGTCACTTTCATGCC
GGTCGCACCGAAATCGAGAGGTCCCAATGGAAAATCGAGCAGATCAACTG
GATGATGGGTCAAGAGATTCGCGATTCCGTCATCGGTTTCTTTGGCTTTG
GCGGTATTAGTCAGGCCATCGCCAAGCGATTGCAGTGCTGGGATGTGGCC
AAGATCATCTACCATACTCGCACCCGAAAGGAAAACGATGGCGACTTCAA
GGCAGAGCATGTGTCGTTTGAACAACTTTTACAAGAAAGTGACTTCCTGG
TGGTAGCTGCTCCACTTACAAACGAAACTAGAGAGAAATTCAATGGAAAG
GCATTTAATCTGATGAAGAGGAGTTCTGTGTTTGTCAATGTGGCCAGAGG
AGGTCTGGTAAATCAAACTGACCTTCATGACGCCCTGACAAATGGTACAA
TTTCTGCCGCAGGCTTGGATGTGACCACACCAGAACCACTGCCCGCCAAT
AGTCCTCTTCTCAATGTGCCCAATTGTGTTATCCTTCCCCATATGGGCAC
TCAGACAATGAAGACTACCATTGAAATGGGATTGCTTGCTGCCAATAATA
TTTTGAACGCCATCGAAGGGAAGCCCATGATAAGGCCAGCCTACGCAAGC
TTTCTAGACCAT
BO04076.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-RA | 981 | CG31673-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
CG31673-RB | 978 | CG31673-PB | 1..975 | 17..994 | 4810 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-RA | 1126 | CG31673-RA | 58..1039 | 13..994 | 4895 | 99.9 | Plus |
CG31673-RB | 1221 | CG31673-RB | 58..1036 | 13..994 | 4815 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20829666..20830075 | 13..422 | 2035 | 99.8 | Plus |
2L | 23513712 | 2L | 20830279..20830614 | 419..754 | 1680 | 100 | Plus |
2L | 23513712 | 2L | 20830669..20830796 | 751..878 | 640 | 100 | Plus |
2L | 23513712 | 2L | 20830860..20830976 | 878..994 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:16:29 has no hits.
BO04076.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:51 Download gff for
BO04076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 1..981 | 17..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:48 Download gff for
BO04076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 54..1040 | 8..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:41 Download gff for
BO04076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 62..1039 | 17..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:51 Download gff for
BO04076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 54..1040 | 8..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:34 Download gff for
BO04076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31673-RA | 62..1039 | 17..996 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:34 Download gff for
BO04076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20830861..20830976 | 879..996 | 98 | | Plus |
2L | 20829670..20830073 | 17..420 | 100 | -> | Plus |
2L | 20830281..20830612 | 421..752 | 100 | -> | Plus |
2L | 20830671..20830796 | 753..878 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:41 Download gff for
BO04076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20829670..20830073 | 17..420 | 100 | -> | Plus |
arm_2L | 20830281..20830612 | 421..752 | 100 | -> | Plus |
arm_2L | 20830671..20830796 | 753..878 | 100 | -> | Plus |
arm_2L | 20830861..20830976 | 879..996 | 98 | | Plus |
BO04076.pep Sequence
Translation from 16 to 1012
> BO04076.pep
MSRATRAFKVLISHPNVPAPALELLRSRGAETIICQSVPPSRDEILQKVP
GVDAIYWAHYQPLNAGILDAAGSQLRCVSTMSSGIDFVDIPEFQKRGIPL
GHTPGVVKNAVADLAIGLMIAAGRHFHAGRTEIERSQWKIEQINWMMGQE
IRDSVIGFFGFGGISQAIAKRLQCWDVAKIIYHTRTRKENDGDFKAEHVS
FEQLLQESDFLVVAAPLTNETREKFNGKAFNLMKRSSVFVNVARGGLVNQ
TDLHDALTNGTISAAGLDVTTPEPLPANSPLLNVPNCVILPHMGTQTMKT
TIEMGLLAANNILNAIEGKPMIRPAYASFLDH
BO04076.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31673-PA | 326 | CG31673-PA | 1..326 | 1..326 | 1686 | 100 | Plus |
CG31673-PB | 325 | CG31673-PB | 1..325 | 1..326 | 1660 | 99.4 | Plus |
CG9331-PK | 326 | CG9331-PK | 3..326 | 4..326 | 912 | 52.9 | Plus |
CG9331-PJ | 326 | CG9331-PJ | 3..326 | 4..326 | 912 | 52.9 | Plus |
CG9331-PG | 326 | CG9331-PG | 3..326 | 4..326 | 912 | 52.9 | Plus |