Clone BO04076 Report

Search the DGRC for BO04076

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG31673-RA
Protein status:BO04076.pep: validated full length
Sequenced Size:1012

Clone Sequence Records

BO04076.3prime Sequence

819 bp (748 high quality bases) assembled on 2005-12-01

> BO04076.3prime
ATGGTCTAGAAAGCTTGCGTAGGCTGGCCTTATCATGGGCTTCCCTTCGA
TGGCGTTCAAAATATTATTGGCAGCAAGCAATCCCATTTCAATGGTAGTC
TTCATTGTCTGAGTGCCCATATGGGGAAGGATAACACAATTGGGCACATT
GAGAAGAGGACTATTGGCGGGCAGTGGTTCTGGTGTGGTCACATCCAAGC
CTGCGGCAGAAATTGTACCATTTGTCAGGGCGTCATGAAGGTCAGTTTGA
TTTACCAGACCTCCTCTGGCCACATTGACAAACACAGAACTCCTCTTCAT
CAGATTAAATGCCTTTCCATTGAATTTCTCTCTAGTTTCGTTTGTAAGTG
GAGCAGCTACCACCAGGAAGTCACTTTCTTGTAAAAGTTGTTCAAACGAC
ACATGCTCTGCCTTGAAGTCGCCATCGTTTTCCTTTCGGGTGCGAGTATG
GTAGATGATCTTGGCCACATCCCAGCACTGCAATCGCTTGGCGATGGCCT
GACTAATACCGCCAAAGCCAAAGAAACCGATGACGGAATCGCGAATCTCT
TGACCCATCATCCAGTTGATCTGCTCGATTTTCCATTGGGACCTCTCGAT
TTCGGTGCGACCGGCATGAAAGTGACGACCGGCTGCAATCATCAAGCCAA
TGGCGAGATCGGCCACTGCATTTTTCACCACCCCGGGAGTGTGGCCCAAT
GGGATTCCCCTCTTCTGGAACTCCGGAATATCCACAAAATCGATTCCGGA
GGACATGGTGCTCACGCAACGCAGCTGGGATCCAGCAGCATCCAGGATTC
CGGCATTCAGGGGCTGGTA

BO04076.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-PA 981 CG31673-RA 178..978 819..19 4005 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-RA 1126 CG31673-RA 239..1039 819..19 4005 100 Minus
CG31673-RB 1221 CG31673-RB 239..1036 819..19 3950 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20830279..20830614 594..259 1680 100 Minus
2L 23513712 2L 20829847..20830075 819..591 1145 100 Minus
2L 23513712 2L 20830669..20830796 262..135 640 100 Minus
2L 23513712 2L 20830860..20830976 135..19 585 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:09:10 has no hits.

BO04076.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:57 Download gff for BO04076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-PA 179..981 16..818 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:45 Download gff for BO04076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-PA 179..981 16..818 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:00:40 Download gff for BO04076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 240..1039 19..818 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:44:41 Download gff for BO04076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 240..1039 19..818 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:44:41 Download gff for BO04076.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20830861..20830976 19..134 100   Minus
2L 20829848..20830073 593..818 100 -> Minus
2L 20830281..20830612 261..592 100 -> Minus
2L 20830671..20830796 135..260 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:00:40 Download gff for BO04076.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20829848..20830073 593..818 100 -> Minus
arm_2L 20830281..20830612 261..592 100 -> Minus
arm_2L 20830671..20830796 135..260 100 -> Minus
arm_2L 20830861..20830976 19..134 100   Minus

BO04076.5prime Sequence

859 bp (807 high quality bases) assembled on 2005-12-01

> BO04076.5prime
GAAGTTATCAGTCGACATGTCTCGTGCGACCAGGGCTTTTAAAGTGCTGA
TTTCGCATCCAAATGTCCCAGCACCGGCTCTGGAACTGCTCCGATCCCGT
GGAGCGGAGACCATCATCTGCCAGAGTGTGCCGCCCTCGAGGGATGAGAT
CCTGCAGAAGGTGCCCGGCGTGGATGCCATCTATTGGGCCCATTACCAGC
CCCTGAATGCCGGAATCCTGGATGCTGCTGGATCCCAGCTGCGTTGCGTG
AGCACCATGTCCTCCGGAATCGATTTTGTGGATATTCCGGAGTTCCAGAA
GAGGGGAATCCCATTGGGCCACACTCCCGGGGTGGTGAAAAATGCAGTGG
CCGATCTCGCCATTGGCTTGATGATTGCAGCCGGTCGTCACTTTCATGCC
GGTCGCACCGAAATCGAGAGGTCCCAATGGAAAATCGAGCAGATCAACTG
GATGATGGGTCAAGAGATTCGCGATTCCGTCATCGGTTTCTTTGGCTTTG
GCGGTATTAGTCAGGCCATCGCCAAGCGATTGCAGTGCTGGGATGTGGCC
AAGATCATCTACCATACTCGCACCCGAAAGGAAAACGATGGCGACTTCAA
GGCAGAGCATGTGTCGTTTGAACAACTTTTACAAGAAAGTGACTTCCTGG
TGGTAGCTGCTCCACTTACAAACGAAACTAGAGAGAAATTCAATGGAAAG
GCATTTAATCTGATGAAGAGGAGTTCTGTGTTTGTCAATGTGGCCAGAGG
AGGTCTGGTAAATCAAACTGACCTTCATGACGCCCTGACAAATGGTACAA
TTTCTGCCGCAGGCTTGGATGTGACCACACCAGAACCACTGCCCCGCCAT
AGTCCTCTT

BO04076.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-PA 981 CG31673-RA 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-RB 1221 CG31673-RB 58..904 13..859 4175 99.6 Plus
CG31673-RA 1126 CG31673-RA 58..904 13..859 4175 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20829666..20830075 13..422 2035 99.8 Plus
2L 23513712 2L 20830279..20830614 419..754 1680 100 Plus
2L 23513712 2L 20830669..20830777 751..859 500 97.2 Plus
Blast to na_te.dros performed on 2015-02-12 15:59:08 has no hits.

BO04076.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:58 Download gff for BO04076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-PA 1..843 17..859 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:47 Download gff for BO04076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-PA 1..843 17..859 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:39 Download gff for BO04076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 53..904 8..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:43 Download gff for BO04076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 53..904 8..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:43 Download gff for BO04076.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20829661..20830073 8..420 99 -> Plus
2L 20830281..20830612 421..752 100 -> Plus
2L 20830671..20830777 753..859 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:39 Download gff for BO04076.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20829661..20830073 8..420 99 -> Plus
arm_2L 20830281..20830612 421..752 100 -> Plus
arm_2L 20830671..20830777 753..859 98   Plus

BO04076.complete Sequence

1012 bp (1012 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629630

> BO04076.complete
GAAGTTATCAGTCGACATGTCTCGTGCGACCAGGGCTTTTAAAGTGCTGA
TTTCGCATCCAAATGTCCCAGCACCGGCTCTGGAACTGCTCCGATCCCGT
GGAGCGGAGACCATCATCTGCCAGAGTGTGCCGCCCTCGAGGGATGAGAT
CCTGCAGAAGGTGCCCGGCGTGGATGCCATCTATTGGGCCCATTACCAGC
CCCTGAATGCCGGAATCCTGGATGCTGCTGGATCCCAGCTGCGTTGCGTG
AGCACCATGTCCTCCGGAATCGATTTTGTGGATATTCCGGAGTTCCAGAA
GAGGGGAATCCCATTGGGCCACACTCCCGGGGTGGTGAAAAATGCAGTGG
CCGATCTCGCCATTGGCTTGATGATTGCAGCCGGTCGTCACTTTCATGCC
GGTCGCACCGAAATCGAGAGGTCCCAATGGAAAATCGAGCAGATCAACTG
GATGATGGGTCAAGAGATTCGCGATTCCGTCATCGGTTTCTTTGGCTTTG
GCGGTATTAGTCAGGCCATCGCCAAGCGATTGCAGTGCTGGGATGTGGCC
AAGATCATCTACCATACTCGCACCCGAAAGGAAAACGATGGCGACTTCAA
GGCAGAGCATGTGTCGTTTGAACAACTTTTACAAGAAAGTGACTTCCTGG
TGGTAGCTGCTCCACTTACAAACGAAACTAGAGAGAAATTCAATGGAAAG
GCATTTAATCTGATGAAGAGGAGTTCTGTGTTTGTCAATGTGGCCAGAGG
AGGTCTGGTAAATCAAACTGACCTTCATGACGCCCTGACAAATGGTACAA
TTTCTGCCGCAGGCTTGGATGTGACCACACCAGAACCACTGCCCGCCAAT
AGTCCTCTTCTCAATGTGCCCAATTGTGTTATCCTTCCCCATATGGGCAC
TCAGACAATGAAGACTACCATTGAAATGGGATTGCTTGCTGCCAATAATA
TTTTGAACGCCATCGAAGGGAAGCCCATGATAAGGCCAGCCTACGCAAGC
TTTCTAGACCAT

BO04076.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-RA 981 CG31673-PA 1..978 17..994 4890 100 Plus
CG31673-RB 978 CG31673-PB 1..975 17..994 4810 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-RA 1126 CG31673-RA 58..1039 13..994 4895 99.9 Plus
CG31673-RB 1221 CG31673-RB 58..1036 13..994 4815 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20829666..20830075 13..422 2035 99.8 Plus
2L 23513712 2L 20830279..20830614 419..754 1680 100 Plus
2L 23513712 2L 20830669..20830796 751..878 640 100 Plus
2L 23513712 2L 20830860..20830976 878..994 585 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:16:29 has no hits.

BO04076.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:51 Download gff for BO04076.complete
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 1..981 17..997 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:48 Download gff for BO04076.complete
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 54..1040 8..994 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:41 Download gff for BO04076.complete
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 62..1039 17..996 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:51 Download gff for BO04076.complete
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 54..1040 8..994 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:34 Download gff for BO04076.complete
Subject Subject Range Query Range Percent Splice Strand
CG31673-RA 62..1039 17..996 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:34 Download gff for BO04076.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20830861..20830976 879..996 98   Plus
2L 20829670..20830073 17..420 100 -> Plus
2L 20830281..20830612 421..752 100 -> Plus
2L 20830671..20830796 753..878 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:41 Download gff for BO04076.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20829670..20830073 17..420 100 -> Plus
arm_2L 20830281..20830612 421..752 100 -> Plus
arm_2L 20830671..20830796 753..878 100 -> Plus
arm_2L 20830861..20830976 879..996 98   Plus

BO04076.pep Sequence

Translation from 16 to 1012

> BO04076.pep
MSRATRAFKVLISHPNVPAPALELLRSRGAETIICQSVPPSRDEILQKVP
GVDAIYWAHYQPLNAGILDAAGSQLRCVSTMSSGIDFVDIPEFQKRGIPL
GHTPGVVKNAVADLAIGLMIAAGRHFHAGRTEIERSQWKIEQINWMMGQE
IRDSVIGFFGFGGISQAIAKRLQCWDVAKIIYHTRTRKENDGDFKAEHVS
FEQLLQESDFLVVAAPLTNETREKFNGKAFNLMKRSSVFVNVARGGLVNQ
TDLHDALTNGTISAAGLDVTTPEPLPANSPLLNVPNCVILPHMGTQTMKT
TIEMGLLAANNILNAIEGKPMIRPAYASFLDH

BO04076.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31673-PA 326 CG31673-PA 1..326 1..326 1686 100 Plus
CG31673-PB 325 CG31673-PB 1..325 1..326 1660 99.4 Plus
CG9331-PK 326 CG9331-PK 3..326 4..326 912 52.9 Plus
CG9331-PJ 326 CG9331-PJ 3..326 4..326 912 52.9 Plus
CG9331-PG 326 CG9331-PG 3..326 4..326 912 52.9 Plus