Clone Sequence Records
BO04078.5prime Sequence
404 bp (404 high quality bases) assembled on 2006-02-03
> BO04078.5prime
GAAGTTATCAGTCGACATGTTGTTAAAAGTGCCATCTGTGGACTGGACGG
ATCAAATAATTTACGTAGTGGACGACGACGAGTCGCTGTCAGACATCGAC
GATGAGCCAGATTTTTCCGAATACATGTGGATGGAGAACGAGGAGGAGTT
CGACAAGAACGAACTGCAACGGCTGGAGGAGGAAGAGATTATGCAGGAGT
GTTTTGAAGCCATGATAGAAGACGAGCTGGAGGAGCAGATCAACGAATGG
GAGAAGGCCAAGACGGACGAGCAGAACACGGCACTTTCCGCACTACCCAA
GAGCCAGTGTGATGTTGAAAAGTCTGTTCTGAATCCGATGGCTGATGAGT
TTGTTCCGCGTTGTCATGTTATAGATTTCCCTGCCTCAGCAAGCTTTCTA
GACC
BO04078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12358-PA | 375 | Paip2-RA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Paip2-RB | 1045 | CG12358-RB | 334..705 | 17..388 | 1860 | 100 | Plus |
Paip2-RA | 1970 | CG12358-RA | 348..719 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12983740..12983884 | 17..161 | 725 | 100 | Plus |
3R | 32079331 | 3R | 12984111..12984237 | 262..388 | 635 | 100 | Plus |
3R | 32079331 | 3R | 12983947..12984048 | 161..262 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:21:41 has no hits.
BO04078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:00 Download gff for
BO04078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paip2-PA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:51 Download gff for
BO04078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12358-PA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:46:21 Download gff for
BO04078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paip2-RA | 348..725 | 17..394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:48:08 Download gff for
BO04078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paip2-RA | 348..725 | 17..394 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:48:08 Download gff for
BO04078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12983947..12984047 | 161..261 | 100 | -> | Plus |
3R | 12984111..12984243 | 262..394 | 98 | | Plus |
3R | 12983735..12983883 | 11..160 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:46:21 Download gff for
BO04078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8809457..8809605 | 11..160 | 97 | -> | Plus |
arm_3R | 8809669..8809769 | 161..261 | 100 | -> | Plus |
arm_3R | 8809833..8809965 | 262..394 | 98 | | Plus |
BO04078.3prime Sequence
404 bp (403 high quality bases) assembled on 2005-12-01
> BO04078.3prime
ATGGTCTAGAAAGCTTGCTGAGGCAGGGAAATCTATAACATGACAACGCG
GAACAAACTCATCAGCCATCGGATTCAGAACAGACTTTTCAACATCACAC
TGGCTCTTGGGTAGTGCGGAAAGTGCCGTGTTCTGCTCGTCCGTCTTGGC
CTTCTCCCATTCGTTGATCTGCTCCTCCAGCTCGTCTTCTATCATGGCTT
CAAAACACTCCTGCATAATCTCTTCCTCCTCCAGCCGTTGCAGTTCGTTC
TTGTCGAACTCCTCCTCGTTCTCCATCCACATGTATTCGGAAAAATCTGG
CTCATCGTCGATGTCTGACAGCGACTCGTCGTCGTCCACTACGTAAATTA
TTTGATCCGTCCAGTCCACAGATGGCACTTTTAACAACATGTCGACTGAT
AACT
BO04078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12358-PA | 375 | Paip2-RA | 1..372 | 390..19 | 1860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Paip2-RB | 1045 | CG12358-RB | 334..705 | 390..19 | 1860 | 100 | Minus |
Paip2-RA | 1970 | CG12358-RA | 348..719 | 390..19 | 1860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:03:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12983740..12983884 | 390..246 | 725 | 100 | Minus |
3R | 32079331 | 3R | 12984111..12984237 | 145..19 | 635 | 100 | Minus |
3R | 32079331 | 3R | 12983947..12984048 | 246..145 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:03:36 has no hits.
BO04078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:53:59 Download gff for
BO04078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paip2-PA | 1..375 | 15..390 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:50 Download gff for
BO04078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12358-PA | 1..375 | 15..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:02 Download gff for
BO04078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paip2-RA | 348..725 | 13..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:52 Download gff for
BO04078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paip2-RA | 348..725 | 13..390 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:52 Download gff for
BO04078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12983735..12983883 | 247..396 | 97 | -> | Minus |
3R | 12983947..12984047 | 146..246 | 100 | -> | Minus |
3R | 12984111..12984243 | 13..145 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:02 Download gff for
BO04078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8809457..8809605 | 247..396 | 97 | -> | Minus |
arm_3R | 8809669..8809769 | 146..246 | 100 | -> | Minus |
arm_3R | 8809833..8809965 | 13..145 | 98 | | Minus |
BO04078.complete Sequence
406 bp (406 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629631
> BO04078.complete
GAAGTTATCAGTCGACATGTTGTTAAAAGTGCCATCTGTGGACTGGACGG
ATCAAATAATTTACGTAGTGGACGACGACGAGTCGCTGTCAGACATCGAC
GATGAGCCAGATTTTTCCGAATACATGTGGATGGAGAACGAGGAGGAGTT
CGACAAGAACGAACTGCAACGGCTGGAGGAGGAAGAGATTATGCAGGAGT
GTTTTGAAGCCATGATAGAAGACGAGCTGGAGGAGCAGATCAACGAATGG
GAGAAGGCCAAGACGGACGAGCAGAACACGGCACTTTCCGCACTACCCAA
GAGCCAGTGTGATGTTGAAAAGTCTGTTCTGAATCCGATGGCTGATGAGT
TTGTTCCGCGTTGTCATGTTATAGATTTCCCTGCCTCAGCAAGCTTTCTA
GACCAT
BO04078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Paip2-RB | 375 | CG12358-PB | 1..372 | 17..388 | 1860 | 100 | Plus |
Paip2-RA | 375 | CG12358-PA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Paip2-RB | 1045 | CG12358-RB | 334..705 | 17..388 | 1860 | 100 | Plus |
Paip2-RA | 1970 | CG12358-RA | 348..719 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12983740..12983884 | 17..161 | 725 | 100 | Plus |
3R | 32079331 | 3R | 12984111..12984237 | 262..388 | 635 | 100 | Plus |
3R | 32079331 | 3R | 12983947..12984048 | 161..262 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:42:26 has no hits.
BO04078.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:28 Download gff for
BO04078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paip2-RA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:50 Download gff for
BO04078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paip2-RA | 348..725 | 17..394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:22 Download gff for
BO04078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paip2-RA | 353..719 | 22..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:28 Download gff for
BO04078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paip2-RA | 348..725 | 17..394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:02 Download gff for
BO04078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Paip2-RA | 353..719 | 22..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:02 Download gff for
BO04078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12983745..12983883 | 22..160 | 100 | -> | Plus |
3R | 12983947..12984047 | 161..261 | 100 | -> | Plus |
3R | 12984111..12984237 | 262..390 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:22 Download gff for
BO04078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8809467..8809605 | 22..160 | 100 | -> | Plus |
arm_3R | 8809669..8809769 | 161..261 | 100 | -> | Plus |
arm_3R | 8809833..8809959 | 262..390 | 98 | | Plus |
BO04078.pep Sequence
Translation from 16 to 406
> BO04078.pep
MLLKVPSVDWTDQIIYVVDDDESLSDIDDEPDFSEYMWMENEEEFDKNEL
QRLEEEEIMQECFEAMIEDELEEQINEWEKAKTDEQNTALSALPKSQCDV
EKSVLNPMADEFVPRCHVIDFPASASFLDH
BO04078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Paip2-PB | 124 | CG12358-PB | 1..124 | 1..124 | 656 | 100 | Plus |
Paip2-PA | 124 | CG12358-PA | 1..124 | 1..124 | 656 | 100 | Plus |