Clone Sequence Records
BO04080.3prime Sequence
713 bp (712 high quality bases) assembled on 2005-12-01
> BO04080.3prime
ATGGTCTAGAAAGCTTGCCGCAGGTTGCTTCTGCACCTTCGCCAATTCTG
CCTTGAACTTCGAAATGGTCTCACGTGCCAGCTTTAGTTTGTCCTTAAGT
GTAACAATCTCCCCCTTGACCTTCTGTTTTACATTCACAATGTTGTCCAA
CGTTTTCGTCTTCTTTTCCTCAAAGTCAGTGTCATGGGTTAGCAACCCAT
TGGCGCTCTGTTCTGAAAGCAGGAGATAATGCTGCAAGATCTGGGTGGGC
TCCTGGAACACTATTTCCTCATACGACTCCGAGACCAGGCCCTTCTTAGT
GTCCATAGTGGTGCTAGAGGAGAGCTCGCCATCGACCACAGGCGATTGGA
AGAGCTTAAGGATGTGGTAGCAGGTAACCGGGCGCTCTGATTGATCGTTG
AAGTATATCTTGATGATCACCTCGAATTCACCCCATCCGGTCTCGGTAAT
CTCGTAGGGCGGCTTAACTACGATCCTGTTCGGATTAGCGTAGCTCTCGT
GCAGCTTGAAATGCACCTTTTTCACGTAAATGGACATGTCCTCGTTGAAA
TAGGGCTTCAAATAGACTTTCCACTGATGCGTGTGTCCGTCCTCCTCGCG
CTTCTTGCCGAAGGATCTGGCAATGTTTCCATACACTATGGGCTTTACTA
TAGTTACGCCCTTTAGTCGGCCACCCGAGTCTCCGCCAAAGTCAGTCATG
TCGACTGATAACT
BO04080.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9207-PA | 684 | Gas41-RA | 1..681 | 699..19 | 3405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gas41-RA | 840 | CG9207-RA | 92..772 | 699..19 | 3405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6949591..6950116 | 174..699 | 2630 | 100 | Plus |
| 2L | 23513712 | 2L | 6949378..6949532 | 19..173 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:16:16 has no hits.
BO04080.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:03 Download gff for
BO04080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas41-PA | 1..684 | 15..699 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:53 Download gff for
BO04080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9207-PA | 1..684 | 15..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:21 Download gff for
BO04080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas41-RA | 84..775 | 15..705 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:27 Download gff for
BO04080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas41-RA | 84..775 | 15..705 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:27 Download gff for
BO04080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6949374..6949532 | 15..173 | 98 | <- | Plus |
| 2L | 6949591..6950114 | 174..697 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:21 Download gff for
BO04080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6949374..6949532 | 15..173 | 98 | <- | Plus |
| arm_2L | 6949591..6950114 | 174..697 | 100 | <- | Plus |
BO04080.5prime Sequence
713 bp (712 high quality bases) assembled on 2005-12-01
> BO04080.5prime
GAAGTTATCAGTCGACATGACTGACTTTGGCGGAGACTCGGGTGGCCGAC
TAAAGGGCGTAACTATAGTAAAGCCCATAGTGTATGGAAACATTGCCAGA
TCCTTCGGCAAGAAGCGCGAGGAGGACGGACACACGCATCAGTGGAAAGT
CTATTTGAAGCCCTATTTCAACGAGGACATGTCCATTTACGTGAAAAAGG
TGCATTTCAAGCTGCACGAGAGCTACGCTAATCCGAACAGGATCGTAGTT
AAGCCGCCCTACGAGATTACCGAGACCGGATGGGGTGAATTCGAGGTGAT
CATCAAGATATACTTCAACGATCAATCAGAGCGCCCGGTTACCTGCTACC
ACATCCTTAAGCTCTTCCAATCGCCTGTGGTCGATGGCGAGCTCTCCTCT
AGCACCACTATGGACACTAAGAAGGGCCTGGTCTCGGAGTCGTATGAGGA
AATAGTGTTCCAGGAGCCCACCCAGATCTTGCAGCATTATCTCCTGCTTT
CAGAACAGAGCGCCAATGGGTTGCTAACCCATGACACTGACTTTGAGGAA
AAGAAGACGAAAACGTTGGACAACATTGTGAATGTAAAACAGAAGGTCAA
GGGGGAGATTGTTACACTTAAGGACAAACTAAAGCTGGCACGTGAGACCA
TTTCGAAGTTCAAGGCAGAATTGGCGAAGGTGCAGAAGCAACCTGCGGCA
AGCTTTCTAGACC
BO04080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9207-PA | 684 | Gas41-RA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:51:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gas41-RA | 840 | CG9207-RA | 92..772 | 17..697 | 3405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6949591..6950116 | 542..17 | 2630 | 100 | Minus |
| 2L | 23513712 | 2L | 6949378..6949532 | 697..543 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:51:38 has no hits.
BO04080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:04 Download gff for
BO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas41-PA | 1..684 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:55 Download gff for
BO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9207-PA | 1..684 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:32 Download gff for
BO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas41-RA | 84..775 | 11..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:51 Download gff for
BO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas41-RA | 84..775 | 11..701 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:51 Download gff for
BO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6949374..6949532 | 543..701 | 98 | <- | Minus |
| 2L | 6949591..6950114 | 19..542 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:32 Download gff for
BO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6949374..6949532 | 543..701 | 98 | <- | Minus |
| arm_2L | 6949591..6950114 | 19..542 | 100 | <- | Minus |
BO04080.complete Sequence
715 bp (715 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629632
> BO04080.complete
GAAGTTATCAGTCGACATGACTGACTTTGGCGGAGACTCGGGTGGCCGAC
TAAAGGGCGTAACTATAGTAAAGCCCATAGTGTATGGAAACATTGCCAGA
TCCTTCGGCAAGAAGCGCGAGGAGGACGGACACACGCATCAGTGGAAAGT
CTATTTGAAGCCCTATTTCAACGAGGACATGTCCATTTACGTGAAAAAGG
TGCATTTCAAGCTGCACGAGAGCTACGCTAATCCGAACAGGATCGTAGTT
AAGCCGCCCTACGAGATTACCGAGACCGGATGGGGTGAATTCGAGGTGAT
CATCAAGATATACTTCAACGATCAATCAGAGCGCCCGGTTACCTGCTACC
ACATCCTTAAGCTCTTCCAATCGCCTGTGGTCGATGGCGAGCTCTCCTCT
AGCACCACTATGGACACTAAGAAGGGCCTGGTCTCGGAGTCGTATGAGGA
AATAGTGTTCCAGGAGCCCACCCAGATCTTGCAGCATTATCTCCTGCTTT
CAGAACAGAGCGCCAATGGGTTGCTAACCCATGACACTGACTTTGAGGAA
AAGAAGACGAAAACGTTGGACAACATTGTGAATGTAAAACAGAAGGTCAA
GGGGGAGATTGTTACACTTAAGGACAAACTAAAGCTGGCACGTGAGACCA
TTTCGAAGTTCAAGGCAGAATTGGCGAAGGTGCAGAAGCAACCTGCGGCA
AGCTTTCTAGACCAT
BO04080.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gas41-RA | 684 | CG9207-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gas41-RA | 840 | CG9207-RA | 92..772 | 17..697 | 3405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6949591..6950116 | 542..17 | 2630 | 100 | Minus |
| 2L | 23513712 | 2L | 6949378..6949532 | 697..543 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:42:28 has no hits.
BO04080.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:52 Download gff for
BO04080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas41-RA | 1..684 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:50 Download gff for
BO04080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas41-RA | 12..703 | 11..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:40 Download gff for
BO04080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas41-RA | 92..772 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:52 Download gff for
BO04080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas41-RA | 12..703 | 11..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:36 Download gff for
BO04080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas41-RA | 92..772 | 17..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:36 Download gff for
BO04080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6949376..6949532 | 543..699 | 98 | <- | Minus |
| 2L | 6949591..6950116 | 17..542 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:40 Download gff for
BO04080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6949376..6949532 | 543..699 | 98 | <- | Minus |
| arm_2L | 6949591..6950116 | 17..542 | 100 | | Minus |
BO04080.pep Sequence
Translation from 16 to 715
> BO04080.pep
MTDFGGDSGGRLKGVTIVKPIVYGNIARSFGKKREEDGHTHQWKVYLKPY
FNEDMSIYVKKVHFKLHESYANPNRIVVKPPYEITETGWGEFEVIIKIYF
NDQSERPVTCYHILKLFQSPVVDGELSSSTTMDTKKGLVSESYEEIVFQE
PTQILQHYLLLSEQSANGLLTHDTDFEEKKTKTLDNIVNVKQKVKGEIVT
LKDKLKLARETISKFKAELAKVQKQPAASFLDH
BO04080.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gas41-PA | 227 | CG9207-PA | 1..227 | 1..227 | 1180 | 100 | Plus |
| ear-PC | 931 | CG4913-PC | 27..106 | 40..119 | 165 | 38.8 | Plus |
| ear-PA | 931 | CG4913-PA | 27..106 | 40..119 | 165 | 38.8 | Plus |
| ear-PB | 945 | CG4913-PB | 27..106 | 40..119 | 165 | 38.8 | Plus |
