Clone BO04081 Report

Search the DGRC for BO04081

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptNlp-RA
Protein status:BO04081.pep: validated full length
Sequenced Size:490

Clone Sequence Records

BO04081.3prime Sequence

488 bp (487 high quality bases) assembled on 2005-12-01

> BO04081.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCTTGTTGTTCTTGGCATTTTTACCAT
CGGCGGCGTTCTCGATCTTGGCGCGCTTCTTTGGGTGCTCGTCCTCCTCG
TCCTCGGCGACATCATCCTCCTCGTCATCCTCCTCCATGTCGACCACCTC
CACATCGTCCTTGATGTTGTGCCCGTGGATGTAGACGGGTCCGCTGCCCT
TGATCAGCTTGAATGTCACCTTCGACTCGTAGAACTCCACGTCGGGATTG
ACGGCGCGGGTCTCTCCGGCCTTCAATACGGCGATGGGAATTTGCACGGA
GTCCTTGGGTGTGTTCACCTCGACCACGTTGAACTCGTTCTCCTTGGCCT
CGGCGCCCAAGAGGATCTGTTTGATGACCAGCTTCTGGCCGCGTGCGTAG
TCCTCGTCCACATCCCACGTGACGCTGTCGCTCTCGGCGGTCAAAGTGAC
TCCGTAGAATGATTCCTCAGCCATGTCGACTGATAACT

BO04081.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7917-PA 459 Nlp-RA 1..456 474..19 2280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
Nlp-RB 914 CG7917-RB 83..539 475..19 2285 100 Minus
Nlp-RA 1080 CG7917-RA 249..705 475..19 2285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30009676..30009977 320..19 1510 100 Minus
3R 32079331 3R 30005287..30005425 453..315 695 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:14:27 has no hits.

BO04081.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:05 Download gff for BO04081.3prime
Subject Subject Range Query Range Percent Splice Strand
Nlp-PA 1..459 15..474 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:57 Download gff for BO04081.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7917-PA 1..459 15..474 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:14 Download gff for BO04081.3prime
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 249..714 8..475 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:54:59 Download gff for BO04081.3prime
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 249..714 8..475 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:54:59 Download gff for BO04081.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30005033..30005055 453..475 100 -> Minus
3R 30005288..30005421 319..452 100 -> Minus
3R 30009678..30009986 8..318 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:14 Download gff for BO04081.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25830755..25830777 453..475 100 -> Minus
arm_3R 25831010..25831143 319..452 100 -> Minus
arm_3R 25835400..25835708 8..318 98   Minus

BO04081.5prime Sequence

488 bp (487 high quality bases) assembled on 2005-12-01

> BO04081.5prime
GAAGTTATCAGTCGACATGGCTGAGGAATCATTCTACGGAGTCACTTTGA
CCGCCGAGAGCGACAGCGTCACGTGGGATGTGGACGAGGACTACGCACGC
GGCCAGAAGCTGGTCATCAAACAGATCCTCTTGGGCGCCGAGGCCAAGGA
GAACGAGTTCAACGTGGTCGAGGTGAACACACCCAAGGACTCCGTGCAAA
TTCCCATCGCCGTATTGAAGGCCGGAGAGACCCGCGCCGTCAATCCCGAC
GTGGAGTTCTACGAGTCGAAGGTGACATTCAAGCTGATCAAGGGCAGCGG
ACCCGTCTACATCCACGGGCACAACATCAAGGACGATGTGGAGGTGGTCG
ACATGGAGGAGGATGACGAGGAGGATGATGTCGCCGAGGACGAGGAGGAC
GAGCACCCAAAGAAGCGCGCCAAGATCGAGAACGCCGCCGATGGTAAAAA
TGCCAAGAACAACAAGAAGAAGGCAAGCTTTCTAGACC

BO04081.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7917-PA 459 Nlp-RA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
Nlp-RB 914 CG7917-RB 83..539 16..472 2285 100 Plus
Nlp-RA 1080 CG7917-RA 249..705 16..472 2285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30009676..30009977 171..472 1510 100 Plus
3R 32079331 3R 30005287..30005425 38..176 695 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:31:31 has no hits.

BO04081.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:06 Download gff for BO04081.5prime
Subject Subject Range Query Range Percent Splice Strand
Nlp-PA 1..459 17..476 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:59 Download gff for BO04081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7917-PA 1..459 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:57:54 Download gff for BO04081.5prime
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 249..714 16..483 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:07 Download gff for BO04081.5prime
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 249..714 16..483 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:07 Download gff for BO04081.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30005033..30005055 16..38 100 -> Plus
3R 30005288..30005421 39..172 100 -> Plus
3R 30009678..30009986 173..483 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:57:54 Download gff for BO04081.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25830755..25830777 16..38 100 -> Plus
arm_3R 25831010..25831143 39..172 100 -> Plus
arm_3R 25835400..25835708 173..483 98   Plus

BO04081.complete Sequence

490 bp (490 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629633

> BO04081.complete
GAAGTTATCAGTCGACATGGCTGAGGAATCATTCTACGGAGTCACTTTGA
CCGCCGAGAGCGACAGCGTCACGTGGGATGTGGACGAGGACTACGCACGC
GGCCAGAAGCTGGTCATCAAACAGATCCTCTTGGGCGCCGAGGCCAAGGA
GAACGAGTTCAACGTGGTCGAGGTGAACACACCCAAGGACTCCGTGCAAA
TTCCCATCGCCGTATTGAAGGCCGGAGAGACCCGCGCCGTCAATCCCGAC
GTGGAGTTCTACGAGTCGAAGGTGACATTCAAGCTGATCAAGGGCAGCGG
ACCCGTCTACATCCACGGGCACAACATCAAGGACGATGTGGAGGTGGTCG
ACATGGAGGAGGATGACGAGGAGGATGATGTCGCCGAGGACGAGGAGGAC
GAGCACCCAAAGAAGCGCGCCAAGATCGAGAACGCCGCCGATGGTAAAAA
TGCCAAGAACAACAAGAAGAAGGCAAGCTTTCTAGACCAT

BO04081.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Nlp-RB 459 CG7917-PB 1..456 17..472 2280 100 Plus
Nlp-RA 459 CG7917-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
Nlp-RB 914 CG7917-RB 83..539 16..472 2285 100 Plus
Nlp-RA 1080 CG7917-RA 249..705 16..472 2285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30009676..30009977 171..472 1510 100 Plus
3R 32079331 3R 30005287..30005425 38..176 695 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:59:16 has no hits.

BO04081.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:53 Download gff for BO04081.complete
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 1..459 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:51 Download gff for BO04081.complete
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 249..714 16..483 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:58 Download gff for BO04081.complete
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 250..705 17..474 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:53 Download gff for BO04081.complete
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 249..714 16..483 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:28 Download gff for BO04081.complete
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 250..705 17..474 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:28 Download gff for BO04081.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30005034..30005055 17..38 100 -> Plus
3R 30005288..30005421 39..172 100 -> Plus
3R 30009678..30009977 173..474 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:58 Download gff for BO04081.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25830756..25830777 17..38 100 -> Plus
arm_3R 25831010..25831143 39..172 100 -> Plus
arm_3R 25835400..25835699 173..474 99   Plus

BO04081.pep Sequence

Translation from 16 to 490

> BO04081.pep
MAEESFYGVTLTAESDSVTWDVDEDYARGQKLVIKQILLGAEAKENEFNV
VEVNTPKDSVQIPIAVLKAGETRAVNPDVEFYESKVTFKLIKGSGPVYIH
GHNIKDDVEVVDMEEDDEEDDVAEDEEDEHPKKRAKIENAADGKNAKNNK
KKASFLDH

BO04081.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
Nlp-PB 152 CG7917-PB 1..152 1..152 780 100 Plus
Nlp-PA 152 CG7917-PA 1..152 1..152 780 100 Plus
CG7911-PB 156 CG7911-PB 1..156 1..152 283 45.7 Plus
CG7911-PA 156 CG7911-PA 1..156 1..152 283 45.7 Plus