Clone Sequence Records
BO04081.3prime Sequence
488 bp (487 high quality bases) assembled on 2005-12-01
> BO04081.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCTTGTTGTTCTTGGCATTTTTACCAT
CGGCGGCGTTCTCGATCTTGGCGCGCTTCTTTGGGTGCTCGTCCTCCTCG
TCCTCGGCGACATCATCCTCCTCGTCATCCTCCTCCATGTCGACCACCTC
CACATCGTCCTTGATGTTGTGCCCGTGGATGTAGACGGGTCCGCTGCCCT
TGATCAGCTTGAATGTCACCTTCGACTCGTAGAACTCCACGTCGGGATTG
ACGGCGCGGGTCTCTCCGGCCTTCAATACGGCGATGGGAATTTGCACGGA
GTCCTTGGGTGTGTTCACCTCGACCACGTTGAACTCGTTCTCCTTGGCCT
CGGCGCCCAAGAGGATCTGTTTGATGACCAGCTTCTGGCCGCGTGCGTAG
TCCTCGTCCACATCCCACGTGACGCTGTCGCTCTCGGCGGTCAAAGTGAC
TCCGTAGAATGATTCCTCAGCCATGTCGACTGATAACT
BO04081.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7917-PA | 459 | Nlp-RA | 1..456 | 474..19 | 2280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:14:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nlp-RB | 914 | CG7917-RB | 83..539 | 475..19 | 2285 | 100 | Minus |
Nlp-RA | 1080 | CG7917-RA | 249..705 | 475..19 | 2285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30009676..30009977 | 320..19 | 1510 | 100 | Minus |
3R | 32079331 | 3R | 30005287..30005425 | 453..315 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:14:27 has no hits.
BO04081.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:05 Download gff for
BO04081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-PA | 1..459 | 15..474 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:57 Download gff for
BO04081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7917-PA | 1..459 | 15..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:14 Download gff for
BO04081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 249..714 | 8..475 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:54:59 Download gff for
BO04081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 249..714 | 8..475 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:54:59 Download gff for
BO04081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30005033..30005055 | 453..475 | 100 | -> | Minus |
3R | 30005288..30005421 | 319..452 | 100 | -> | Minus |
3R | 30009678..30009986 | 8..318 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:14 Download gff for
BO04081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25830755..25830777 | 453..475 | 100 | -> | Minus |
arm_3R | 25831010..25831143 | 319..452 | 100 | -> | Minus |
arm_3R | 25835400..25835708 | 8..318 | 98 | | Minus |
BO04081.5prime Sequence
488 bp (487 high quality bases) assembled on 2005-12-01
> BO04081.5prime
GAAGTTATCAGTCGACATGGCTGAGGAATCATTCTACGGAGTCACTTTGA
CCGCCGAGAGCGACAGCGTCACGTGGGATGTGGACGAGGACTACGCACGC
GGCCAGAAGCTGGTCATCAAACAGATCCTCTTGGGCGCCGAGGCCAAGGA
GAACGAGTTCAACGTGGTCGAGGTGAACACACCCAAGGACTCCGTGCAAA
TTCCCATCGCCGTATTGAAGGCCGGAGAGACCCGCGCCGTCAATCCCGAC
GTGGAGTTCTACGAGTCGAAGGTGACATTCAAGCTGATCAAGGGCAGCGG
ACCCGTCTACATCCACGGGCACAACATCAAGGACGATGTGGAGGTGGTCG
ACATGGAGGAGGATGACGAGGAGGATGATGTCGCCGAGGACGAGGAGGAC
GAGCACCCAAAGAAGCGCGCCAAGATCGAGAACGCCGCCGATGGTAAAAA
TGCCAAGAACAACAAGAAGAAGGCAAGCTTTCTAGACC
BO04081.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7917-PA | 459 | Nlp-RA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nlp-RB | 914 | CG7917-RB | 83..539 | 16..472 | 2285 | 100 | Plus |
Nlp-RA | 1080 | CG7917-RA | 249..705 | 16..472 | 2285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30009676..30009977 | 171..472 | 1510 | 100 | Plus |
3R | 32079331 | 3R | 30005287..30005425 | 38..176 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:31:31 has no hits.
BO04081.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:06 Download gff for
BO04081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-PA | 1..459 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:59 Download gff for
BO04081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7917-PA | 1..459 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:57:54 Download gff for
BO04081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 249..714 | 16..483 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:07 Download gff for
BO04081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 249..714 | 16..483 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:07 Download gff for
BO04081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30005033..30005055 | 16..38 | 100 | -> | Plus |
3R | 30005288..30005421 | 39..172 | 100 | -> | Plus |
3R | 30009678..30009986 | 173..483 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:57:54 Download gff for
BO04081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25830755..25830777 | 16..38 | 100 | -> | Plus |
arm_3R | 25831010..25831143 | 39..172 | 100 | -> | Plus |
arm_3R | 25835400..25835708 | 173..483 | 98 | | Plus |
BO04081.complete Sequence
490 bp (490 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629633
> BO04081.complete
GAAGTTATCAGTCGACATGGCTGAGGAATCATTCTACGGAGTCACTTTGA
CCGCCGAGAGCGACAGCGTCACGTGGGATGTGGACGAGGACTACGCACGC
GGCCAGAAGCTGGTCATCAAACAGATCCTCTTGGGCGCCGAGGCCAAGGA
GAACGAGTTCAACGTGGTCGAGGTGAACACACCCAAGGACTCCGTGCAAA
TTCCCATCGCCGTATTGAAGGCCGGAGAGACCCGCGCCGTCAATCCCGAC
GTGGAGTTCTACGAGTCGAAGGTGACATTCAAGCTGATCAAGGGCAGCGG
ACCCGTCTACATCCACGGGCACAACATCAAGGACGATGTGGAGGTGGTCG
ACATGGAGGAGGATGACGAGGAGGATGATGTCGCCGAGGACGAGGAGGAC
GAGCACCCAAAGAAGCGCGCCAAGATCGAGAACGCCGCCGATGGTAAAAA
TGCCAAGAACAACAAGAAGAAGGCAAGCTTTCTAGACCAT
BO04081.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nlp-RB | 459 | CG7917-PB | 1..456 | 17..472 | 2280 | 100 | Plus |
Nlp-RA | 459 | CG7917-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nlp-RB | 914 | CG7917-RB | 83..539 | 16..472 | 2285 | 100 | Plus |
Nlp-RA | 1080 | CG7917-RA | 249..705 | 16..472 | 2285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30009676..30009977 | 171..472 | 1510 | 100 | Plus |
3R | 32079331 | 3R | 30005287..30005425 | 38..176 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:59:16 has no hits.
BO04081.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:53 Download gff for
BO04081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 1..459 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:51 Download gff for
BO04081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 249..714 | 16..483 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:58 Download gff for
BO04081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 250..705 | 17..474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:53 Download gff for
BO04081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 249..714 | 16..483 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:28 Download gff for
BO04081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 250..705 | 17..474 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:28 Download gff for
BO04081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30005034..30005055 | 17..38 | 100 | -> | Plus |
3R | 30005288..30005421 | 39..172 | 100 | -> | Plus |
3R | 30009678..30009977 | 173..474 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:58 Download gff for
BO04081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25830756..25830777 | 17..38 | 100 | -> | Plus |
arm_3R | 25831010..25831143 | 39..172 | 100 | -> | Plus |
arm_3R | 25835400..25835699 | 173..474 | 99 | | Plus |
BO04081.pep Sequence
Translation from 16 to 490
> BO04081.pep
MAEESFYGVTLTAESDSVTWDVDEDYARGQKLVIKQILLGAEAKENEFNV
VEVNTPKDSVQIPIAVLKAGETRAVNPDVEFYESKVTFKLIKGSGPVYIH
GHNIKDDVEVVDMEEDDEEDDVAEDEEDEHPKKRAKIENAADGKNAKNNK
KKASFLDH
BO04081.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nlp-PB | 152 | CG7917-PB | 1..152 | 1..152 | 780 | 100 | Plus |
Nlp-PA | 152 | CG7917-PA | 1..152 | 1..152 | 780 | 100 | Plus |
CG7911-PB | 156 | CG7911-PB | 1..156 | 1..152 | 283 | 45.7 | Plus |
CG7911-PA | 156 | CG7911-PA | 1..156 | 1..152 | 283 | 45.7 | Plus |