Clone BO04083 Report

Search the DGRC for BO04083

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG7039-RA
Protein status:BO04083.pep: validated full length
Sequenced Size:634

Clone Sequence Records

BO04083.3prime Sequence

632 bp (631 high quality bases) assembled on 2005-12-01

> BO04083.3prime
ATGGTCTAGAAAGCTTGCATCGTTTTCCCGCGGCGGCCGCACCACCGCAT
GTCGTTTGATGGCCTCCACCAGCCACTTAATGCCCTCGTCCACGCCCTCG
CCGTGCAGCGCGGATACGGGAATGGTGAGGCAATCTCGCCGCCCGATTAA
AGCACCCGCCTGCTGGAAAACTGGCTTGATCTCCCGCACGCCCATCACAT
CCGGCAGATCCTGTTTGTTGGCCAGGATTAGCAAAGGCACTCCGGACAGC
AGTTCGTTCTTGATCATCTTGTCAAATATCGCTTTGGACTCTTCCATGCG
CTCCCTGTCGTTGGAATCAATCACGTAGATGACGCCATGCGACTCCTGGT
AGTACTTATCCCAGAGAGATTGCAGCTCCTGCTGGCCACCAAGATCCCAG
AAGTTGAGGCGTACGCCCTGCACGTCGATGGTGCCGATGTTGAGGCCCAC
CGTCGTCGTGATCTTGCTCGGATTGAGGCCCTTATAGTTACGCGTAAACG
TGGTCTTGGCGGCCTCCAGGTAAGTCGTTTTGCCAGCATTGTCCAGGCCC
AGGATTACCACGCAGTAGTCGTCCTTCTGAGTCATGTATTTGTAGAAGCC
GTGCATCAATGTGTACATGTCGACTGATAACT

BO04083.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7039-PA 603 CG7039-RA 1..600 618..19 3000 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
Arfrp1-RA 1101 CG7039-RA 77..676 618..19 3000 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9107675..9107929 273..19 1275 100 Minus
X 23542271 X 9107304..9107557 526..273 1270 100 Minus
X 23542271 X 9107145..9107237 618..526 465 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:52:01 has no hits.

BO04083.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:07 Download gff for BO04083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7039-PA 1..603 18..618 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:02 Download gff for BO04083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7039-PA 1..603 18..618 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:34 Download gff for BO04083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7039-RA 102..708 19..626 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:25 Download gff for BO04083.3prime
Subject Subject Range Query Range Percent Splice Strand
Arfrp1-RA 70..676 19..626 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:25 Download gff for BO04083.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9107138..9107237 526..626 96 -> Minus
X 9107305..9107557 273..525 100 -> Minus
X 9107676..9107929 19..272 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:34 Download gff for BO04083.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9001171..9001270 526..626 96 -> Minus
arm_X 9001338..9001590 273..525 100 -> Minus
arm_X 9001709..9001962 19..272 100   Minus

BO04083.5prime Sequence

632 bp (631 high quality bases) assembled on 2005-12-01

> BO04083.5prime
GAAGTTATCAGTCGACATGTACACATTGATGCACGGCTTCTACAAATACA
TGACTCAGAAGGACGACTACTGCGTGGTAATCCTGGGCCTGGACAATGCT
GGCAAAACGACTTACCTGGAGGCCGCCAAGACCACGTTTACGCGTAACTA
TAAGGGCCTCAATCCGAGCAAGATCACGACGACGGTGGGCCTCAACATCG
GCACCATCGACGTGCAGGGCGTACGCCTCAACTTCTGGGATCTTGGTGGC
CAGCAGGAGCTGCAATCTCTCTGGGATAAGTACTACCAGGAGTCGCATGG
CGTCATCTACGTGATTGATTCCAACGACAGGGAGCGCATGGAAGAGTCCA
AAGCGATATTTGACAAGATGATCAAGAACGAACTGCTGTCCGGAGTGCCT
TTGCTAATCCTGGCCAACAAACAGGATCTGCCGGATGTGATGGGCGTGCG
GGAGATCAAGCCAGTTTTCCAGCAGGCGGGTGCTTTAATCGGGCGGCGAG
ATTGCCTCACCATTCCCGTATCCGCGCTGCACGGCGAGGGCGTGGACGAG
GGCATTAAGTGGCTGGTGGAGGCCATCAAACGACATGCGGTGGTGCGGCC
GCCGCGGGAAAACGATGCAAGCTTTCTAGACC

BO04083.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7039-PA 603 CG7039-RA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
Arfrp1-RA 1101 CG7039-RA 77..676 17..616 3000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9107675..9107929 362..616 1275 100 Plus
X 23542271 X 9107304..9107557 109..362 1270 100 Plus
X 23542271 X 9107145..9107237 17..109 465 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:04:59 has no hits.

BO04083.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:08 Download gff for BO04083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7039-PA 1..603 17..617 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:03 Download gff for BO04083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7039-PA 1..603 17..617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:06 Download gff for BO04083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7039-RA 102..708 9..616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:48 Download gff for BO04083.5prime
Subject Subject Range Query Range Percent Splice Strand
Arfrp1-RA 70..676 9..616 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:48 Download gff for BO04083.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9107138..9107237 9..109 96 -> Plus
X 9107305..9107557 110..362 100 -> Plus
X 9107676..9107929 363..616 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:06 Download gff for BO04083.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9001709..9001962 363..616 100   Plus
arm_X 9001171..9001270 9..109 96 -> Plus
arm_X 9001338..9001590 110..362 100 -> Plus

BO04083.complete Sequence

634 bp (634 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629634

> BO04083.complete
GAAGTTATCAGTCGACATGTACACATTGATGCACGGCTTCTACAAATACA
TGACTCAGAAGGACGACTACTGCGTGGTAATCCTGGGCCTGGACAATGCT
GGCAAAACGACTTACCTGGAGGCCGCCAAGACCACGTTTACGCGTAACTA
TAAGGGCCTCAATCCGAGCAAGATCACGACGACGGTGGGCCTCAACATCG
GCACCATCGACGTGCAGGGCGTACGCCTCAACTTCTGGGATCTTGGTGGC
CAGCAGGAGCTGCAATCTCTCTGGGATAAGTACTACCAGGAGTCGCATGG
CGTCATCTACGTGATTGATTCCAACGACAGGGAGCGCATGGAAGAGTCCA
AAGCGATATTTGACAAGATGATCAAGAACGAACTGCTGTCCGGAGTGCCT
TTGCTAATCCTGGCCAACAAACAGGATCTGCCGGATGTGATGGGCGTGCG
GGAGATCAAGCCAGTTTTCCAGCAGGCGGGTGCTTTAATCGGGCGGCGAG
ATTGCCTCACCATTCCCGTATCCGCGCTGCACGGCGAGGGCGTGGACGAG
GGCATTAAGTGGCTGGTGGAGGCCATCAAACGACATGCGGTGGTGCGGCC
GCCGCGGGAAAACGATGCAAGCTTTCTAGACCAT

BO04083.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
Arfrp1-RA 603 CG7039-PA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Arfrp1-RA 1101 CG7039-RA 77..676 17..616 3000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9107675..9107929 362..616 1275 100 Plus
X 23542271 X 9107304..9107557 109..362 1270 100 Plus
X 23542271 X 9107145..9107237 17..109 465 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:36:12 has no hits.

BO04083.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:54 Download gff for BO04083.complete
Subject Subject Range Query Range Percent Splice Strand
CG7039-RA 1..603 17..617 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:52 Download gff for BO04083.complete
Subject Subject Range Query Range Percent Splice Strand
CG7039-RA 140..746 9..616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:30 Download gff for BO04083.complete
Subject Subject Range Query Range Percent Splice Strand
CG7039-RA 109..708 17..618 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:54 Download gff for BO04083.complete
Subject Subject Range Query Range Percent Splice Strand
CG7039-RA 140..746 9..616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:04 Download gff for BO04083.complete
Subject Subject Range Query Range Percent Splice Strand
Arfrp1-RA 77..676 17..618 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:04 Download gff for BO04083.complete
Subject Subject Range Query Range Percent Splice Strand
X 9107676..9107929 363..618 99   Plus
X 9107305..9107557 110..362 100 -> Plus
X 9107145..9107237 17..109 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:30 Download gff for BO04083.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9001338..9001590 110..362 100 -> Plus
arm_X 9001178..9001270 17..109 100 -> Plus
arm_X 9001709..9001962 363..618 99   Plus

BO04083.pep Sequence

Translation from 16 to 634

> BO04083.pep
MYTLMHGFYKYMTQKDDYCVVILGLDNAGKTTYLEAAKTTFTRNYKGLNP
SKITTTVGLNIGTIDVQGVRLNFWDLGGQQELQSLWDKYYQESHGVIYVI
DSNDRERMEESKAIFDKMIKNELLSGVPLLILANKQDLPDVMGVREIKPV
FQQAGALIGRRDCLTIPVSALHGEGVDEGIKWLVEAIKRHAVVRPPREND
ASFLDH

BO04083.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
Arfrp1-PA 200 CG7039-PA 1..200 1..200 1048 100 Plus
Arl2-PA 184 CG7435-PA 8..178 10..189 296 37 Plus
Arf79F-PJ 182 CG8385-PJ 1..178 1..188 276 33.7 Plus
Arf79F-PI 182 CG8385-PI 1..178 1..188 276 33.7 Plus
Arf79F-PH 182 CG8385-PH 1..178 1..188 276 33.7 Plus