Clone Sequence Records
BO04083.3prime Sequence
632 bp (631 high quality bases) assembled on 2005-12-01
> BO04083.3prime
ATGGTCTAGAAAGCTTGCATCGTTTTCCCGCGGCGGCCGCACCACCGCAT
GTCGTTTGATGGCCTCCACCAGCCACTTAATGCCCTCGTCCACGCCCTCG
CCGTGCAGCGCGGATACGGGAATGGTGAGGCAATCTCGCCGCCCGATTAA
AGCACCCGCCTGCTGGAAAACTGGCTTGATCTCCCGCACGCCCATCACAT
CCGGCAGATCCTGTTTGTTGGCCAGGATTAGCAAAGGCACTCCGGACAGC
AGTTCGTTCTTGATCATCTTGTCAAATATCGCTTTGGACTCTTCCATGCG
CTCCCTGTCGTTGGAATCAATCACGTAGATGACGCCATGCGACTCCTGGT
AGTACTTATCCCAGAGAGATTGCAGCTCCTGCTGGCCACCAAGATCCCAG
AAGTTGAGGCGTACGCCCTGCACGTCGATGGTGCCGATGTTGAGGCCCAC
CGTCGTCGTGATCTTGCTCGGATTGAGGCCCTTATAGTTACGCGTAAACG
TGGTCTTGGCGGCCTCCAGGTAAGTCGTTTTGCCAGCATTGTCCAGGCCC
AGGATTACCACGCAGTAGTCGTCCTTCTGAGTCATGTATTTGTAGAAGCC
GTGCATCAATGTGTACATGTCGACTGATAACT
BO04083.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7039-PA | 603 | CG7039-RA | 1..600 | 618..19 | 3000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:52:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfrp1-RA | 1101 | CG7039-RA | 77..676 | 618..19 | 3000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:51:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9107675..9107929 | 273..19 | 1275 | 100 | Minus |
X | 23542271 | X | 9107304..9107557 | 526..273 | 1270 | 100 | Minus |
X | 23542271 | X | 9107145..9107237 | 618..526 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:52:01 has no hits.
BO04083.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:07 Download gff for
BO04083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-PA | 1..603 | 18..618 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:02 Download gff for
BO04083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-PA | 1..603 | 18..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:34 Download gff for
BO04083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-RA | 102..708 | 19..626 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:25 Download gff for
BO04083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfrp1-RA | 70..676 | 19..626 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:25 Download gff for
BO04083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9107138..9107237 | 526..626 | 96 | -> | Minus |
X | 9107305..9107557 | 273..525 | 100 | -> | Minus |
X | 9107676..9107929 | 19..272 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:34 Download gff for
BO04083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9001171..9001270 | 526..626 | 96 | -> | Minus |
arm_X | 9001338..9001590 | 273..525 | 100 | -> | Minus |
arm_X | 9001709..9001962 | 19..272 | 100 | | Minus |
BO04083.5prime Sequence
632 bp (631 high quality bases) assembled on 2005-12-01
> BO04083.5prime
GAAGTTATCAGTCGACATGTACACATTGATGCACGGCTTCTACAAATACA
TGACTCAGAAGGACGACTACTGCGTGGTAATCCTGGGCCTGGACAATGCT
GGCAAAACGACTTACCTGGAGGCCGCCAAGACCACGTTTACGCGTAACTA
TAAGGGCCTCAATCCGAGCAAGATCACGACGACGGTGGGCCTCAACATCG
GCACCATCGACGTGCAGGGCGTACGCCTCAACTTCTGGGATCTTGGTGGC
CAGCAGGAGCTGCAATCTCTCTGGGATAAGTACTACCAGGAGTCGCATGG
CGTCATCTACGTGATTGATTCCAACGACAGGGAGCGCATGGAAGAGTCCA
AAGCGATATTTGACAAGATGATCAAGAACGAACTGCTGTCCGGAGTGCCT
TTGCTAATCCTGGCCAACAAACAGGATCTGCCGGATGTGATGGGCGTGCG
GGAGATCAAGCCAGTTTTCCAGCAGGCGGGTGCTTTAATCGGGCGGCGAG
ATTGCCTCACCATTCCCGTATCCGCGCTGCACGGCGAGGGCGTGGACGAG
GGCATTAAGTGGCTGGTGGAGGCCATCAAACGACATGCGGTGGTGCGGCC
GCCGCGGGAAAACGATGCAAGCTTTCTAGACC
BO04083.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7039-PA | 603 | CG7039-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfrp1-RA | 1101 | CG7039-RA | 77..676 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9107675..9107929 | 362..616 | 1275 | 100 | Plus |
X | 23542271 | X | 9107304..9107557 | 109..362 | 1270 | 100 | Plus |
X | 23542271 | X | 9107145..9107237 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:04:59 has no hits.
BO04083.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:08 Download gff for
BO04083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-PA | 1..603 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:03 Download gff for
BO04083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-PA | 1..603 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:06 Download gff for
BO04083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-RA | 102..708 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:48 Download gff for
BO04083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfrp1-RA | 70..676 | 9..616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:48 Download gff for
BO04083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9107138..9107237 | 9..109 | 96 | -> | Plus |
X | 9107305..9107557 | 110..362 | 100 | -> | Plus |
X | 9107676..9107929 | 363..616 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:06 Download gff for
BO04083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9001709..9001962 | 363..616 | 100 | | Plus |
arm_X | 9001171..9001270 | 9..109 | 96 | -> | Plus |
arm_X | 9001338..9001590 | 110..362 | 100 | -> | Plus |
BO04083.complete Sequence
634 bp (634 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629634
> BO04083.complete
GAAGTTATCAGTCGACATGTACACATTGATGCACGGCTTCTACAAATACA
TGACTCAGAAGGACGACTACTGCGTGGTAATCCTGGGCCTGGACAATGCT
GGCAAAACGACTTACCTGGAGGCCGCCAAGACCACGTTTACGCGTAACTA
TAAGGGCCTCAATCCGAGCAAGATCACGACGACGGTGGGCCTCAACATCG
GCACCATCGACGTGCAGGGCGTACGCCTCAACTTCTGGGATCTTGGTGGC
CAGCAGGAGCTGCAATCTCTCTGGGATAAGTACTACCAGGAGTCGCATGG
CGTCATCTACGTGATTGATTCCAACGACAGGGAGCGCATGGAAGAGTCCA
AAGCGATATTTGACAAGATGATCAAGAACGAACTGCTGTCCGGAGTGCCT
TTGCTAATCCTGGCCAACAAACAGGATCTGCCGGATGTGATGGGCGTGCG
GGAGATCAAGCCAGTTTTCCAGCAGGCGGGTGCTTTAATCGGGCGGCGAG
ATTGCCTCACCATTCCCGTATCCGCGCTGCACGGCGAGGGCGTGGACGAG
GGCATTAAGTGGCTGGTGGAGGCCATCAAACGACATGCGGTGGTGCGGCC
GCCGCGGGAAAACGATGCAAGCTTTCTAGACCAT
BO04083.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfrp1-RA | 603 | CG7039-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfrp1-RA | 1101 | CG7039-RA | 77..676 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9107675..9107929 | 362..616 | 1275 | 100 | Plus |
X | 23542271 | X | 9107304..9107557 | 109..362 | 1270 | 100 | Plus |
X | 23542271 | X | 9107145..9107237 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:36:12 has no hits.
BO04083.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:54 Download gff for
BO04083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-RA | 1..603 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:52 Download gff for
BO04083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-RA | 140..746 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:30 Download gff for
BO04083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-RA | 109..708 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:54 Download gff for
BO04083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7039-RA | 140..746 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:04 Download gff for
BO04083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfrp1-RA | 77..676 | 17..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:04 Download gff for
BO04083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9107676..9107929 | 363..618 | 99 | | Plus |
X | 9107305..9107557 | 110..362 | 100 | -> | Plus |
X | 9107145..9107237 | 17..109 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:30 Download gff for
BO04083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9001338..9001590 | 110..362 | 100 | -> | Plus |
arm_X | 9001178..9001270 | 17..109 | 100 | -> | Plus |
arm_X | 9001709..9001962 | 363..618 | 99 | | Plus |
BO04083.pep Sequence
Translation from 16 to 634
> BO04083.pep
MYTLMHGFYKYMTQKDDYCVVILGLDNAGKTTYLEAAKTTFTRNYKGLNP
SKITTTVGLNIGTIDVQGVRLNFWDLGGQQELQSLWDKYYQESHGVIYVI
DSNDRERMEESKAIFDKMIKNELLSGVPLLILANKQDLPDVMGVREIKPV
FQQAGALIGRRDCLTIPVSALHGEGVDEGIKWLVEAIKRHAVVRPPREND
ASFLDH
BO04083.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfrp1-PA | 200 | CG7039-PA | 1..200 | 1..200 | 1048 | 100 | Plus |
Arl2-PA | 184 | CG7435-PA | 8..178 | 10..189 | 296 | 37 | Plus |
Arf79F-PJ | 182 | CG8385-PJ | 1..178 | 1..188 | 276 | 33.7 | Plus |
Arf79F-PI | 182 | CG8385-PI | 1..178 | 1..188 | 276 | 33.7 | Plus |
Arf79F-PH | 182 | CG8385-PH | 1..178 | 1..188 | 276 | 33.7 | Plus |