Clone BO04084 Report

Search the DGRC for BO04084

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG6171-RA
Protein status:BO04084.pep: validated full length
Sequenced Size:595

Clone Sequence Records

BO04084.3prime Sequence

593 bp (592 high quality bases) assembled on 2005-12-01

> BO04084.3prime
ATGGTCTAGAAAGCTTGCCTTACAATCCGCAGGATGGGAGTAATCCTGGA
AGTGAACTGGGTTACGGCGATAGCATGCGTTACCGAAAGGACAAGCTGGA
GTTCCGAGGGGTGGCGCTGGAAAGTTTGGTCGCCGGTAATCCTGATCCCC
CGGATGAGCTTCTGCACTACGATGAGCTGGATTTCGCCTGTAGCATCGTA
TGCCGAAGCGACAAGAAGTCCTAATACTGCTTGAAGATACGGTAGACTCG
TCGGCGGCGTCCTGTGCATTGCTATTAGTGGGCTCGGTTTTTACCATCGC
AGCTGCAGGTGAGTTTCCATTGTCCGCTGGTTCGGCTTTAATCTTGATCG
CAGGAGTAGTGCTTGTGGGCTCATCTGCATTCTCCACTGGCTCAGCTTTT
ATTTTCATAGGAACTTCAGGATTTGTTTCATCTTTAATGGACGCCACAGG
CTCCTCCGATTTTACGCGCTTTCTTAGGCCGTTTTCTGCGCCAAAATTTG
CGTTGCAATTGTGTGTGATATCTTCAGAAGATTTTCGTTTAGCGCCACTA
TCGGCTGTAGATGCATCTGTGGCACTCATGTCGACTGATAACT

BO04084.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6171-PA 564 CG6171-RA 1..561 579..19 2805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6171-RA 1001 CG6171-RA 90..650 579..19 2805 100 Minus
CG6171-RB 947 CG6171-RB 90..645 579..24 2780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15363376..15363768 187..579 1965 100 Plus
3R 32079331 3R 15363147..15363319 19..191 865 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:05:10 has no hits.

BO04084.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:09 Download gff for BO04084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6171-PA 1..564 18..579 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:05 Download gff for BO04084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6171-PA 1..564 18..579 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:39:49 Download gff for BO04084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6171-RA 90..660 11..579 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:39:55 Download gff for BO04084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6171-RA 90..660 11..579 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:39:55 Download gff for BO04084.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15363137..15363315 11..187 97 <- Plus
3R 15363377..15363768 188..579 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:39:49 Download gff for BO04084.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11188859..11189037 11..187 97 <- Plus
arm_3R 11189099..11189490 188..579 100   Plus

BO04084.5prime Sequence

593 bp (592 high quality bases) assembled on 2005-12-01

> BO04084.5prime
GAAGTTATCAGTCGACATGAGTGCCACAGATGCATCTACAGCCGATAGTG
GCGCTAAACGAAAATCTTCTGAAGATATCACACACAATTGCAACGCAAAT
TTTGGCGCAGAAAACGGCCTAAGAAAGCGCGTAAAATCGGAGGAGCCTGT
GGCGTCCATTAAAGATGAAACAAATCCTGAAGTTCCTATGAAAATAAAAG
CTGAGCCAGTGGAGAATGCAGATGAGCCCACAAGCACTACTCCTGCGATC
AAGATTAAAGCCGAACCAGCGGACAATGGAAACTCACCTGCAGCTGCGAT
GGTAAAAACCGAGCCCACTAATAGCAATGCACAGGACGCCGCCGACGAGT
CTACCGTATCTTCAAGCAGTATTAGGACTTCTTGTCGCTTCGGCATACGA
TGCTACAGGCGAAATCCAGCTCATCGTAGTGCAGAAGCTCATCCGGGGGA
TCAGGATTACCGGCGACCAAACTTTCCAGCGCCACCCCTCGGAACTCCAG
CTTGTCCTTTCGGTAACGCATGCTATCGCCGTAACCCAGTTCACTTCCAG
GATTACTCCCATCCTGCGGATTGTAAGGCAAGCTTTCTAGACC

BO04084.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6171-PA 564 CG6171-RA 1..561 17..577 2805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6171-RA 1001 CG6171-RA 90..650 17..577 2805 100 Plus
CG6171-RB 947 CG6171-RB 90..645 17..572 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15363376..15363768 409..17 1965 100 Minus
3R 32079331 3R 15363147..15363319 577..405 865 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:05:32 has no hits.

BO04084.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:10 Download gff for BO04084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6171-PA 1..564 17..578 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:06 Download gff for BO04084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6171-PA 1..564 17..578 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:09 Download gff for BO04084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6171-RA 90..660 17..585 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:57 Download gff for BO04084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6171-RA 90..660 17..585 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:57 Download gff for BO04084.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15363137..15363315 409..585 97 <- Minus
3R 15363377..15363768 17..408 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:09 Download gff for BO04084.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11188859..11189037 409..585 97 <- Minus
arm_3R 11189099..11189490 17..408 100   Minus

BO04084.complete Sequence

595 bp (595 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629635

> BO04084.complete
GAAGTTATCAGTCGACATGAGTGCCACAGATGCATCTACAGCCGATAGTG
GCGCTAAACGAAAATCTTCTGAAGATATCACACACAATTGCAACGCAAAT
TTTGGCGCAGAAAACGGCCTAAGAAAGCGCGTAAAATCGGAGGAGCCTGT
GGCGTCCATTAAAGATGAAACAAATCCTGAAGTTCCTATGAAAATAAAAG
CTGAGCCAGTGGAGAATGCAGATGAGCCCACAAGCACTACTCCTGCGATC
AAGATTAAAGCCGAACCAGCGGACAATGGAAACTCACCTGCAGCTGCGAT
GGTAAAAACCGAGCCCACTAATAGCAATGCACAGGACGCCGCCGACGAGT
CTACCGTATCTTCAAGCAGTATTAGGACTTCTTGTCGCTTCGGCATACGA
TGCTACAGGCGAAATCCAGCTCATCGTAGTGCAGAAGCTCATCCGGGGGA
TCAGGATTACCGGCGACCAAACTTTCCAGCGCCACCCCTCGGAACTCCAG
CTTGTCCTTTCGGTAACGCATGCTATCGCCGTAACCCAGTTCACTTCCAG
GATTACTCCCATCCTGCGGATTGTAAGGCAAGCTTTCTAGACCAT

BO04084.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6171-RA 564 CG6171-PA 1..561 17..577 2805 100 Plus
CG6171-RB 768 CG6171-PB 1..556 17..572 2780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6171-RA 1001 CG6171-RA 90..650 17..577 2805 100 Plus
CG6171-RB 947 CG6171-RB 90..645 17..572 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15363376..15363768 409..17 1965 100 Minus
3R 32079331 3R 15363147..15363319 577..405 865 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:41:07 has no hits.

BO04084.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:55 Download gff for BO04084.complete
Subject Subject Range Query Range Percent Splice Strand
CG6171-RA 1..564 17..578 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:55 Download gff for BO04084.complete
Subject Subject Range Query Range Percent Splice Strand
CG6171-RA 164..734 17..585 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:41 Download gff for BO04084.complete
Subject Subject Range Query Range Percent Splice Strand
CG6171-RA 90..650 17..579 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:56 Download gff for BO04084.complete
Subject Subject Range Query Range Percent Splice Strand
CG6171-RA 164..734 17..585 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:16 Download gff for BO04084.complete
Subject Subject Range Query Range Percent Splice Strand
CG6171-RA 90..650 17..579 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:16 Download gff for BO04084.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15363377..15363768 17..408 100   Minus
3R 15363145..15363315 409..579 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:41 Download gff for BO04084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11188867..11189037 409..579 98 <- Minus
arm_3R 11189099..11189490 17..408 100   Minus

BO04084.pep Sequence

Translation from 16 to 595

> BO04084.pep
MSATDASTADSGAKRKSSEDITHNCNANFGAENGLRKRVKSEEPVASIKD
ETNPEVPMKIKAEPVENADEPTSTTPAIKIKAEPADNGNSPAAAMVKTEP
TNSNAQDAADESTVSSSSIRTSCRFGIRCYRRNPAHRSAEAHPGDQDYRR
PNFPAPPLGTPACPFGNACYRRNPVHFQDYSHPADCKASFLDH

BO04084.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6171-PA 187 CG6171-PA 1..187 1..187 1000 100 Plus
CG6171-PB 255 CG6171-PB 1..185 1..185 986 100 Plus