Clone Sequence Records
BO04084.3prime Sequence
593 bp (592 high quality bases) assembled on 2005-12-01
> BO04084.3prime
ATGGTCTAGAAAGCTTGCCTTACAATCCGCAGGATGGGAGTAATCCTGGA
AGTGAACTGGGTTACGGCGATAGCATGCGTTACCGAAAGGACAAGCTGGA
GTTCCGAGGGGTGGCGCTGGAAAGTTTGGTCGCCGGTAATCCTGATCCCC
CGGATGAGCTTCTGCACTACGATGAGCTGGATTTCGCCTGTAGCATCGTA
TGCCGAAGCGACAAGAAGTCCTAATACTGCTTGAAGATACGGTAGACTCG
TCGGCGGCGTCCTGTGCATTGCTATTAGTGGGCTCGGTTTTTACCATCGC
AGCTGCAGGTGAGTTTCCATTGTCCGCTGGTTCGGCTTTAATCTTGATCG
CAGGAGTAGTGCTTGTGGGCTCATCTGCATTCTCCACTGGCTCAGCTTTT
ATTTTCATAGGAACTTCAGGATTTGTTTCATCTTTAATGGACGCCACAGG
CTCCTCCGATTTTACGCGCTTTCTTAGGCCGTTTTCTGCGCCAAAATTTG
CGTTGCAATTGTGTGTGATATCTTCAGAAGATTTTCGTTTAGCGCCACTA
TCGGCTGTAGATGCATCTGTGGCACTCATGTCGACTGATAACT
BO04084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6171-PA | 564 | CG6171-RA | 1..561 | 579..19 | 2805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6171-RA | 1001 | CG6171-RA | 90..650 | 579..19 | 2805 | 100 | Minus |
CG6171-RB | 947 | CG6171-RB | 90..645 | 579..24 | 2780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15363376..15363768 | 187..579 | 1965 | 100 | Plus |
3R | 32079331 | 3R | 15363147..15363319 | 19..191 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:05:10 has no hits.
BO04084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:09 Download gff for
BO04084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6171-PA | 1..564 | 18..579 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:05 Download gff for
BO04084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6171-PA | 1..564 | 18..579 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:39:49 Download gff for
BO04084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6171-RA | 90..660 | 11..579 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:39:55 Download gff for
BO04084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6171-RA | 90..660 | 11..579 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:39:55 Download gff for
BO04084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15363137..15363315 | 11..187 | 97 | <- | Plus |
3R | 15363377..15363768 | 188..579 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:39:49 Download gff for
BO04084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11188859..11189037 | 11..187 | 97 | <- | Plus |
arm_3R | 11189099..11189490 | 188..579 | 100 | | Plus |
BO04084.5prime Sequence
593 bp (592 high quality bases) assembled on 2005-12-01
> BO04084.5prime
GAAGTTATCAGTCGACATGAGTGCCACAGATGCATCTACAGCCGATAGTG
GCGCTAAACGAAAATCTTCTGAAGATATCACACACAATTGCAACGCAAAT
TTTGGCGCAGAAAACGGCCTAAGAAAGCGCGTAAAATCGGAGGAGCCTGT
GGCGTCCATTAAAGATGAAACAAATCCTGAAGTTCCTATGAAAATAAAAG
CTGAGCCAGTGGAGAATGCAGATGAGCCCACAAGCACTACTCCTGCGATC
AAGATTAAAGCCGAACCAGCGGACAATGGAAACTCACCTGCAGCTGCGAT
GGTAAAAACCGAGCCCACTAATAGCAATGCACAGGACGCCGCCGACGAGT
CTACCGTATCTTCAAGCAGTATTAGGACTTCTTGTCGCTTCGGCATACGA
TGCTACAGGCGAAATCCAGCTCATCGTAGTGCAGAAGCTCATCCGGGGGA
TCAGGATTACCGGCGACCAAACTTTCCAGCGCCACCCCTCGGAACTCCAG
CTTGTCCTTTCGGTAACGCATGCTATCGCCGTAACCCAGTTCACTTCCAG
GATTACTCCCATCCTGCGGATTGTAAGGCAAGCTTTCTAGACC
BO04084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6171-PA | 564 | CG6171-RA | 1..561 | 17..577 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6171-RA | 1001 | CG6171-RA | 90..650 | 17..577 | 2805 | 100 | Plus |
CG6171-RB | 947 | CG6171-RB | 90..645 | 17..572 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15363376..15363768 | 409..17 | 1965 | 100 | Minus |
3R | 32079331 | 3R | 15363147..15363319 | 577..405 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:05:32 has no hits.
BO04084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:10 Download gff for
BO04084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6171-PA | 1..564 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:06 Download gff for
BO04084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6171-PA | 1..564 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:09 Download gff for
BO04084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6171-RA | 90..660 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:57 Download gff for
BO04084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6171-RA | 90..660 | 17..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:57 Download gff for
BO04084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15363137..15363315 | 409..585 | 97 | <- | Minus |
3R | 15363377..15363768 | 17..408 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:09 Download gff for
BO04084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11188859..11189037 | 409..585 | 97 | <- | Minus |
arm_3R | 11189099..11189490 | 17..408 | 100 | | Minus |
BO04084.complete Sequence
595 bp (595 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629635
> BO04084.complete
GAAGTTATCAGTCGACATGAGTGCCACAGATGCATCTACAGCCGATAGTG
GCGCTAAACGAAAATCTTCTGAAGATATCACACACAATTGCAACGCAAAT
TTTGGCGCAGAAAACGGCCTAAGAAAGCGCGTAAAATCGGAGGAGCCTGT
GGCGTCCATTAAAGATGAAACAAATCCTGAAGTTCCTATGAAAATAAAAG
CTGAGCCAGTGGAGAATGCAGATGAGCCCACAAGCACTACTCCTGCGATC
AAGATTAAAGCCGAACCAGCGGACAATGGAAACTCACCTGCAGCTGCGAT
GGTAAAAACCGAGCCCACTAATAGCAATGCACAGGACGCCGCCGACGAGT
CTACCGTATCTTCAAGCAGTATTAGGACTTCTTGTCGCTTCGGCATACGA
TGCTACAGGCGAAATCCAGCTCATCGTAGTGCAGAAGCTCATCCGGGGGA
TCAGGATTACCGGCGACCAAACTTTCCAGCGCCACCCCTCGGAACTCCAG
CTTGTCCTTTCGGTAACGCATGCTATCGCCGTAACCCAGTTCACTTCCAG
GATTACTCCCATCCTGCGGATTGTAAGGCAAGCTTTCTAGACCAT
BO04084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6171-RA | 564 | CG6171-PA | 1..561 | 17..577 | 2805 | 100 | Plus |
CG6171-RB | 768 | CG6171-PB | 1..556 | 17..572 | 2780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6171-RA | 1001 | CG6171-RA | 90..650 | 17..577 | 2805 | 100 | Plus |
CG6171-RB | 947 | CG6171-RB | 90..645 | 17..572 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15363376..15363768 | 409..17 | 1965 | 100 | Minus |
3R | 32079331 | 3R | 15363147..15363319 | 577..405 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:41:07 has no hits.
BO04084.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:55 Download gff for
BO04084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6171-RA | 1..564 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:55 Download gff for
BO04084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6171-RA | 164..734 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:41 Download gff for
BO04084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6171-RA | 90..650 | 17..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:56 Download gff for
BO04084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6171-RA | 164..734 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:16 Download gff for
BO04084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6171-RA | 90..650 | 17..579 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:16 Download gff for
BO04084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15363377..15363768 | 17..408 | 100 | | Minus |
3R | 15363145..15363315 | 409..579 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:41 Download gff for
BO04084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11188867..11189037 | 409..579 | 98 | <- | Minus |
arm_3R | 11189099..11189490 | 17..408 | 100 | | Minus |
BO04084.pep Sequence
Translation from 16 to 595
> BO04084.pep
MSATDASTADSGAKRKSSEDITHNCNANFGAENGLRKRVKSEEPVASIKD
ETNPEVPMKIKAEPVENADEPTSTTPAIKIKAEPADNGNSPAAAMVKTEP
TNSNAQDAADESTVSSSSIRTSCRFGIRCYRRNPAHRSAEAHPGDQDYRR
PNFPAPPLGTPACPFGNACYRRNPVHFQDYSHPADCKASFLDH
BO04084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6171-PA | 187 | CG6171-PA | 1..187 | 1..187 | 1000 | 100 | Plus |
CG6171-PB | 255 | CG6171-PB | 1..185 | 1..185 | 986 | 100 | Plus |