Clone Sequence Records
BO04085.3prime Sequence
707 bp (706 high quality bases) assembled on 2005-12-01
> BO04085.3prime
ATGGTCTAGAAAGCTTGCCTTCTGCTGTCGCTCAGCCAAAAGTCCCTTAA
CCAGTCCCACCAACATATCCAGACCTTCCTGATTGTTTTTCTGGTAGTAT
GGAAGGGCCTGAATGCGCTTGACCCACTGTACCAGGCGTGGAAACTGATC
CGGCTCGATTGGCGCAAAAGCCTCGGCCGTGGACACCGATGCGATGCAGC
TGAGATCGGCGATGGTCAGCTTGTCGCCCACCAAGTAATCACCTTCAGCC
AGACAGTGCTCCAAGCCATCATAGGCCTTCTGAAGGTAGGCCACTCGATC
GCTGGGCACCTCGCCAGCTCCGAAATAGATCACCGGCTCGACAATGAAAC
GGATTCGCGGGAATAGATGACCGCAATCGTAGTACAAACGGGCATCCACC
AGGCGCCGCTTCTCCGGATCCTTTGGATACAGGGAATCATCGCCCTCCGG
TGCGTACTTATCTGCCAGATAGCTGCAGATAATGTGCGAATCGCTCACGA
TGGTGCCGTTATCATCGAGCACGGGGATCGTGTGCTGCGCATTCAACTTG
AGAAACTCGGCGGATTTGTGCTCTCCGGCCTTTACGTTGACCAGTCGCAA
GTCCAACTCCAAACCGAGGGCGGCGGCCGTCAGCAGAACAGCACGACAGG
GGGGACTACGGGGAGCGTAATAGAGGATGGGTTTGGCCGACATGTCGACT
GATAACT
BO04085.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5224-PA | 678 | CG5224-RA | 1..675 | 693..19 | 3375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:52:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE11-RB | 943 | CG5224-RB | 66..740 | 693..19 | 3375 | 100 | Minus |
GstE11-RA | 762 | CG5224-RA | 66..740 | 693..19 | 3375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18504245..18504822 | 596..19 | 2890 | 100 | Minus |
2R | 25286936 | 2R | 18503752..18503849 | 693..596 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:52:16 has no hits.
BO04085.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:11 Download gff for
BO04085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5224-PA | 1..678 | 15..693 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:07 Download gff for
BO04085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5224-PA | 1..678 | 15..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:36 Download gff for
BO04085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE11-RA | 61..743 | 15..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:22 Download gff for
BO04085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE11-RA | 61..743 | 15..699 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:22 Download gff for
BO04085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18503747..18503849 | 596..699 | 97 | -> | Minus |
2R | 18504246..18504825 | 15..595 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:36 Download gff for
BO04085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14391252..14391354 | 596..699 | 97 | -> | Minus |
arm_2R | 14391751..14392330 | 15..595 | 99 | | Minus |
BO04085.5prime Sequence
707 bp (706 high quality bases) assembled on 2005-12-01
> BO04085.5prime
GAAGTTATCAGTCGACATGTCGGCCAAACCCATCCTCTATTACGCTCCCC
GTAGTCCCCCCTGTCGTGCTGTTCTGCTGACGGCCGCCGCCCTCGGTTTG
GAGTTGGACTTGCGACTGGTCAACGTAAAGGCCGGAGAGCACAAATCCGC
CGAGTTTCTCAAGTTGAATGCGCAGCACACGATCCCCGTGCTCGATGATA
ACGGCACCATCGTGAGCGATTCGCACATTATCTGCAGCTATCTGGCAGAT
AAGTACGCACCGGAGGGCGATGATTCCCTGTATCCAAAGGATCCGGAGAA
GCGGCGCCTGGTGGATGCCCGTTTGTACTACGATTGCGGTCATCTATTCC
CGCGAATCCGTTTCATTGTCGAGCCGGTGATCTATTTCGGAGCTGGCGAG
GTGCCCAGCGATCGAGTGGCCTACCTTCAGAAGGCCTATGATGGCTTGGA
GCACTGTCTGGCTGAAGGTGATTACTTGGTGGGCGACAAGCTGACCATCG
CCGATCTCAGCTGCATCGCATCGGTGTCCACGGCCGAGGCTTTTGCGCCA
ATCGAGCCGGATCAGTTTCCACGCCTGGTACAGTGGGTCAAGCGCATTCA
GGCCCTTCCATACTACCAGAAAAACAATCAGGAAGGTCTGGATATGTTGG
TGGGACTGGTTAAGGGACTTTTGGCTGAGCGACAGCAGAAGGCAAGCTTT
CTAGACC
BO04085.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5224-PA | 678 | CG5224-RA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE11-RB | 943 | CG5224-RB | 66..740 | 17..691 | 3375 | 100 | Plus |
GstE11-RA | 762 | CG5224-RA | 66..740 | 17..691 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18504245..18504822 | 114..691 | 2890 | 100 | Plus |
2R | 25286936 | 2R | 18503752..18503849 | 17..114 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:09:23 has no hits.
BO04085.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:12 Download gff for
BO04085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5224-PA | 1..678 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:08 Download gff for
BO04085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5224-PA | 1..678 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:00:41 Download gff for
BO04085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE11-RA | 61..743 | 11..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:44:48 Download gff for
BO04085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE11-RA | 61..743 | 11..695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:44:48 Download gff for
BO04085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18503747..18503849 | 11..114 | 97 | -> | Plus |
2R | 18504246..18504825 | 115..695 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:00:41 Download gff for
BO04085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14391252..14391354 | 11..114 | 97 | -> | Plus |
arm_2R | 14391751..14392330 | 115..695 | 99 | | Plus |
BO04085.complete Sequence
709 bp (709 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629636
> BO04085.complete
GAAGTTATCAGTCGACATGTCGGCCAAACCCATCCTCTATTACGCTCCCC
GTAGTCCCCCCTGTCGTGCTGTTCTGCTGACGGCCGCCGCCCTCGGTTTG
GAGTTGGACTTGCGACTGGTCAACGTAAAGGCCGGAGAGCACAAATCCGC
CGAGTTTCTCAAGTTGAATGCGCAGCACACGATCCCCGTGCTCGATGATA
ACGGCACCATCGTGAGCGATTCGCACATTATCTGCAGCTATCTGGCAGAT
AAGTACGCACCGGAGGGCGATGATTCCCTGTATCCAAAGGATCCGGAGAA
GCGGCGCCTGGTGGATGCCCGTTTGTACTACGATTGCGGTCATCTATTCC
CGCGAATCCGTTTCATTGTCGAGCCGGTGATCTATTTCGGAGCTGGCGAG
GTGCCCAGCGATCGAGTGGCCTACCTTCAGAAGGCCTATGATGGCTTGGA
GCACTGTCTGGCTGAAGGTGATTACTTGGTGGGCGACAAGCTGACCATCG
CCGATCTCAGCTGCATCGCATCGGTGTCCACGGCCGAGGCTTTTGCGCCA
ATCGAGCCGGATCAGTTTCCACGCCTGGTACAGTGGGTCAAGCGCATTCA
GGCCCTTCCATACTACCAGAAAAACAATCAGGAAGGTCTGGATATGTTGG
TGGGACTGGTTAAGGGACTTTTGGCTGAGCGACAGCAGAAGGCAAGCTTT
CTAGACCAT
BO04085.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE11-RB | 678 | CG5224-PB | 1..675 | 17..691 | 3375 | 100 | Plus |
GstE11-RA | 678 | CG5224-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE11-RB | 943 | CG5224-RB | 66..740 | 17..691 | 3375 | 100 | Plus |
GstE11-RA | 762 | CG5224-RA | 66..740 | 17..691 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18504245..18504822 | 114..691 | 2890 | 100 | Plus |
2R | 25286936 | 2R | 18503752..18503849 | 17..114 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:02:50 has no hits.
BO04085.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:29 Download gff for
BO04085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5224-RA | 1..678 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:52 Download gff for
BO04085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5224-RA | 59..741 | 11..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:21 Download gff for
BO04085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE11-RA | 66..740 | 17..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:29 Download gff for
BO04085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5224-RA | 59..741 | 11..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:05 Download gff for
BO04085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE11-RA | 66..740 | 17..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:05 Download gff for
BO04085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18503752..18503849 | 17..114 | 100 | -> | Plus |
2R | 18504246..18504822 | 115..693 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:21 Download gff for
BO04085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14391257..14391354 | 17..114 | 100 | -> | Plus |
arm_2R | 14391751..14392327 | 115..693 | 99 | | Plus |
BO04085.pep Sequence
Translation from 16 to 709
> BO04085.pep
MSAKPILYYAPRSPPCRAVLLTAAALGLELDLRLVNVKAGEHKSAEFLKL
NAQHTIPVLDDNGTIVSDSHIICSYLADKYAPEGDDSLYPKDPEKRRLVD
ARLYYDCGHLFPRIRFIVEPVIYFGAGEVPSDRVAYLQKAYDGLEHCLAE
GDYLVGDKLTIADLSCIASVSTAEAFAPIEPDQFPRLVQWVKRIQALPYY
QKNNQEGLDMLVGLVKGLLAERQQKASFLDH
BO04085.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE11-PB | 225 | CG5224-PB | 1..225 | 1..225 | 1172 | 100 | Plus |
GstE11-PA | 225 | CG5224-PA | 1..225 | 1..225 | 1172 | 100 | Plus |
GstE12-PC | 223 | CG16936-PC | 2..223 | 3..225 | 566 | 49.3 | Plus |
GstE12-PB | 223 | CG16936-PB | 2..223 | 3..225 | 566 | 49.3 | Plus |
GstE12-PD | 223 | CG16936-PD | 2..223 | 3..225 | 566 | 49.3 | Plus |