Clone BO04085 Report

Search the DGRC for BO04085

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG5224-RA
Protein status:BO04085.pep: validated full length
Sequenced Size:709

Clone Sequence Records

BO04085.3prime Sequence

707 bp (706 high quality bases) assembled on 2005-12-01

> BO04085.3prime
ATGGTCTAGAAAGCTTGCCTTCTGCTGTCGCTCAGCCAAAAGTCCCTTAA
CCAGTCCCACCAACATATCCAGACCTTCCTGATTGTTTTTCTGGTAGTAT
GGAAGGGCCTGAATGCGCTTGACCCACTGTACCAGGCGTGGAAACTGATC
CGGCTCGATTGGCGCAAAAGCCTCGGCCGTGGACACCGATGCGATGCAGC
TGAGATCGGCGATGGTCAGCTTGTCGCCCACCAAGTAATCACCTTCAGCC
AGACAGTGCTCCAAGCCATCATAGGCCTTCTGAAGGTAGGCCACTCGATC
GCTGGGCACCTCGCCAGCTCCGAAATAGATCACCGGCTCGACAATGAAAC
GGATTCGCGGGAATAGATGACCGCAATCGTAGTACAAACGGGCATCCACC
AGGCGCCGCTTCTCCGGATCCTTTGGATACAGGGAATCATCGCCCTCCGG
TGCGTACTTATCTGCCAGATAGCTGCAGATAATGTGCGAATCGCTCACGA
TGGTGCCGTTATCATCGAGCACGGGGATCGTGTGCTGCGCATTCAACTTG
AGAAACTCGGCGGATTTGTGCTCTCCGGCCTTTACGTTGACCAGTCGCAA
GTCCAACTCCAAACCGAGGGCGGCGGCCGTCAGCAGAACAGCACGACAGG
GGGGACTACGGGGAGCGTAATAGAGGATGGGTTTGGCCGACATGTCGACT
GATAACT

BO04085.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5224-PA 678 CG5224-RA 1..675 693..19 3375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
GstE11-RB 943 CG5224-RB 66..740 693..19 3375 100 Minus
GstE11-RA 762 CG5224-RA 66..740 693..19 3375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18504245..18504822 596..19 2890 100 Minus
2R 25286936 2R 18503752..18503849 693..596 490 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:52:16 has no hits.

BO04085.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:11 Download gff for BO04085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5224-PA 1..678 15..693 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:07 Download gff for BO04085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5224-PA 1..678 15..693 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:36 Download gff for BO04085.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE11-RA 61..743 15..699 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:22 Download gff for BO04085.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE11-RA 61..743 15..699 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:22 Download gff for BO04085.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18503747..18503849 596..699 97 -> Minus
2R 18504246..18504825 15..595 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:36 Download gff for BO04085.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14391252..14391354 596..699 97 -> Minus
arm_2R 14391751..14392330 15..595 99   Minus

BO04085.5prime Sequence

707 bp (706 high quality bases) assembled on 2005-12-01

> BO04085.5prime
GAAGTTATCAGTCGACATGTCGGCCAAACCCATCCTCTATTACGCTCCCC
GTAGTCCCCCCTGTCGTGCTGTTCTGCTGACGGCCGCCGCCCTCGGTTTG
GAGTTGGACTTGCGACTGGTCAACGTAAAGGCCGGAGAGCACAAATCCGC
CGAGTTTCTCAAGTTGAATGCGCAGCACACGATCCCCGTGCTCGATGATA
ACGGCACCATCGTGAGCGATTCGCACATTATCTGCAGCTATCTGGCAGAT
AAGTACGCACCGGAGGGCGATGATTCCCTGTATCCAAAGGATCCGGAGAA
GCGGCGCCTGGTGGATGCCCGTTTGTACTACGATTGCGGTCATCTATTCC
CGCGAATCCGTTTCATTGTCGAGCCGGTGATCTATTTCGGAGCTGGCGAG
GTGCCCAGCGATCGAGTGGCCTACCTTCAGAAGGCCTATGATGGCTTGGA
GCACTGTCTGGCTGAAGGTGATTACTTGGTGGGCGACAAGCTGACCATCG
CCGATCTCAGCTGCATCGCATCGGTGTCCACGGCCGAGGCTTTTGCGCCA
ATCGAGCCGGATCAGTTTCCACGCCTGGTACAGTGGGTCAAGCGCATTCA
GGCCCTTCCATACTACCAGAAAAACAATCAGGAAGGTCTGGATATGTTGG
TGGGACTGGTTAAGGGACTTTTGGCTGAGCGACAGCAGAAGGCAAGCTTT
CTAGACC

BO04085.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5224-PA 678 CG5224-RA 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
GstE11-RB 943 CG5224-RB 66..740 17..691 3375 100 Plus
GstE11-RA 762 CG5224-RA 66..740 17..691 3375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18504245..18504822 114..691 2890 100 Plus
2R 25286936 2R 18503752..18503849 17..114 490 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:09:23 has no hits.

BO04085.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:12 Download gff for BO04085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5224-PA 1..678 17..695 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:08 Download gff for BO04085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5224-PA 1..678 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:00:41 Download gff for BO04085.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE11-RA 61..743 11..695 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:44:48 Download gff for BO04085.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE11-RA 61..743 11..695 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:44:48 Download gff for BO04085.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18503747..18503849 11..114 97 -> Plus
2R 18504246..18504825 115..695 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:00:41 Download gff for BO04085.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14391252..14391354 11..114 97 -> Plus
arm_2R 14391751..14392330 115..695 99   Plus

BO04085.complete Sequence

709 bp (709 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629636

> BO04085.complete
GAAGTTATCAGTCGACATGTCGGCCAAACCCATCCTCTATTACGCTCCCC
GTAGTCCCCCCTGTCGTGCTGTTCTGCTGACGGCCGCCGCCCTCGGTTTG
GAGTTGGACTTGCGACTGGTCAACGTAAAGGCCGGAGAGCACAAATCCGC
CGAGTTTCTCAAGTTGAATGCGCAGCACACGATCCCCGTGCTCGATGATA
ACGGCACCATCGTGAGCGATTCGCACATTATCTGCAGCTATCTGGCAGAT
AAGTACGCACCGGAGGGCGATGATTCCCTGTATCCAAAGGATCCGGAGAA
GCGGCGCCTGGTGGATGCCCGTTTGTACTACGATTGCGGTCATCTATTCC
CGCGAATCCGTTTCATTGTCGAGCCGGTGATCTATTTCGGAGCTGGCGAG
GTGCCCAGCGATCGAGTGGCCTACCTTCAGAAGGCCTATGATGGCTTGGA
GCACTGTCTGGCTGAAGGTGATTACTTGGTGGGCGACAAGCTGACCATCG
CCGATCTCAGCTGCATCGCATCGGTGTCCACGGCCGAGGCTTTTGCGCCA
ATCGAGCCGGATCAGTTTCCACGCCTGGTACAGTGGGTCAAGCGCATTCA
GGCCCTTCCATACTACCAGAAAAACAATCAGGAAGGTCTGGATATGTTGG
TGGGACTGGTTAAGGGACTTTTGGCTGAGCGACAGCAGAAGGCAAGCTTT
CTAGACCAT

BO04085.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
GstE11-RB 678 CG5224-PB 1..675 17..691 3375 100 Plus
GstE11-RA 678 CG5224-PA 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
GstE11-RB 943 CG5224-RB 66..740 17..691 3375 100 Plus
GstE11-RA 762 CG5224-RA 66..740 17..691 3375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18504245..18504822 114..691 2890 100 Plus
2R 25286936 2R 18503752..18503849 17..114 490 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:02:50 has no hits.

BO04085.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:29 Download gff for BO04085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5224-RA 1..678 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:52 Download gff for BO04085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5224-RA 59..741 11..695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:21 Download gff for BO04085.complete
Subject Subject Range Query Range Percent Splice Strand
GstE11-RA 66..740 17..693 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:29 Download gff for BO04085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5224-RA 59..741 11..695 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:05 Download gff for BO04085.complete
Subject Subject Range Query Range Percent Splice Strand
GstE11-RA 66..740 17..693 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:05 Download gff for BO04085.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18503752..18503849 17..114 100 -> Plus
2R 18504246..18504822 115..693 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:21 Download gff for BO04085.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14391257..14391354 17..114 100 -> Plus
arm_2R 14391751..14392327 115..693 99   Plus

BO04085.pep Sequence

Translation from 16 to 709

> BO04085.pep
MSAKPILYYAPRSPPCRAVLLTAAALGLELDLRLVNVKAGEHKSAEFLKL
NAQHTIPVLDDNGTIVSDSHIICSYLADKYAPEGDDSLYPKDPEKRRLVD
ARLYYDCGHLFPRIRFIVEPVIYFGAGEVPSDRVAYLQKAYDGLEHCLAE
GDYLVGDKLTIADLSCIASVSTAEAFAPIEPDQFPRLVQWVKRIQALPYY
QKNNQEGLDMLVGLVKGLLAERQQKASFLDH

BO04085.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
GstE11-PB 225 CG5224-PB 1..225 1..225 1172 100 Plus
GstE11-PA 225 CG5224-PA 1..225 1..225 1172 100 Plus
GstE12-PC 223 CG16936-PC 2..223 3..225 566 49.3 Plus
GstE12-PB 223 CG16936-PB 2..223 3..225 566 49.3 Plus
GstE12-PD 223 CG16936-PD 2..223 3..225 566 49.3 Plus