Clone BO04087 Report

Search the DGRC for BO04087

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG10214-RA
Protein status:BO04087.pep: validated full length
Sequenced Size:667

Clone Sequence Records

BO04087.3prime Sequence

665 bp (664 high quality bases) assembled on 2005-12-01

> BO04087.3prime
ATGGTCTAGAAAGCTTGCTTTAAATAAGTTCGCTTTGTAATACGCAAGCT
CTTTGATGCTTTCTCGGATGTCGTCCAGACTACGATGCGTGAAAGATTTT
TTGGGAGCGGAATCCAGAATTGCGGGATGCCATCGCTTGGCCAGTTCCTT
GATGGTGGACACATCGACGATGCGGTAATGCAGGTAAGCATCTACCAATG
GCATGAATTTCATAATGAATAGTCGGTCGGTGTAGACGGAGTTCCCACCA
AGCGGACAGGCGCGCTTTGGTATGTTCTTCTCGAGATAGGATAGCACTAG
ATTGGAGGCTTCTTCGAGATTCACATCCGAGCTCTTGCATCGATCAATAA
GACCTGAATTGTAATGATGTTTCATGCACCACTCGTTCATCGAGTCGTAG
ACCTCCTGCGGATGGTTGATGGCAAAGCATGGTCCCTCCGACTTCACGTT
CAGGTCCTGGTCCGTAATGATGCAGGCCACCTCGAGGATTTTGTCCTTTT
CAATGTCCAGCCCGGTCATCTCCAAGTCCATCCACACGATGTCCGTGTCT
AAGCCACAGGTGCTGCTCATTCTGTCATTTGAATTGAATGCGATGTGGCT
CCGAATTTGGCGGTTCAGGGACAATCCGACGCGTCGAAGGTGAGCAAGCA
TGTCGACTGATAACT

BO04087.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10214-PA 636 CG10214-RA 1..633 651..19 3165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10214-RA 970 CG10214-RA 91..723 651..19 3165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23766766..23767398 19..651 3165 100 Plus
Blast to na_te.dros performed 2015-02-11 15:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 1376..1429 285..231 110 69.1 Minus

BO04087.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:13 Download gff for BO04087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10214-PA 1..636 15..651 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:10 Download gff for BO04087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10214-PA 1..636 15..651 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:05 Download gff for BO04087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 82..729 11..659 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:23 Download gff for BO04087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 82..729 11..659 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:23 Download gff for BO04087.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23766760..23767407 11..659 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:05 Download gff for BO04087.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19592482..19593129 11..659 98   Plus

BO04087.5prime Sequence

665 bp (664 high quality bases) assembled on 2005-12-01

> BO04087.5prime
GAAGTTATCAGTCGACATGCTTGCTCACCTTCGACGCGTCGGATTGTCCC
TGAACCGCCAAATTCGGAGCCACATCGCATTCAATTCAAATGACAGAATG
AGCAGCACCTGTGGCTTAGACACGGACATCGTGTGGATGGACTTGGAGAT
GACCGGGCTGGACATTGAAAAGGACAAAATCCTCGAGGTGGCCTGCATCA
TTACGGACCAGGACCTGAACGTGAAGTCGGAGGGACCATGCTTTGCCATC
AACCATCCGCAGGAGGTCTACGACTCGATGAACGAGTGGTGCATGAAACA
TCATTACAATTCAGGTCTTATTGATCGATGCAAGAGCTCGGATGTGAATC
TCGAAGAAGCCTCCAATCTAGTGCTATCCTATCTCGAGAAGAACATACCA
AAGCGCGCCTGTCCGCTTGGTGGGAACTCCGTCTACACCGACCGACTATT
CATTATGAAATTCATGCCATTGGTAGATGCTTACCTGCATTACCGCATCG
TCGATGTGTCCACCATCAAGGAACTGGCCAAGCGATGGCATCCCGCAATT
CTGGATTCCGCTCCCAAAAAATCTTTCACGCATCGTAGTCTGGACGACAT
CCGAGAAAGCATCAAAGAGCTTGCGTATTACAAAGCGAACTTATTTAAAG
CAAGCTTTCTAGACC

BO04087.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10214-PA 636 CG10214-RA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10214-RA 970 CG10214-RA 91..723 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23766766..23767398 649..17 3165 100 Minus
Blast to na_te.dros performed 2015-02-04 19:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 1376..1429 383..437 110 69.1 Plus

BO04087.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:14 Download gff for BO04087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10214-PA 1..636 17..653 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:11 Download gff for BO04087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10214-PA 1..636 17..653 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:23 Download gff for BO04087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 82..729 9..657 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:28 Download gff for BO04087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 82..729 9..657 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:28 Download gff for BO04087.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23766760..23767407 9..657 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:23 Download gff for BO04087.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19592482..19593129 9..657 98   Minus

BO04087.complete Sequence

667 bp (667 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629637

> BO04087.complete
GAAGTTATCAGTCGACATGCTTGCTCACCTTCGACGCGTCGGATTGTCCC
TGAACCGCCAAATTCGGAGCCACATCGCATTCAATTCAAATGACAGAATG
AGCAGCACCTGTGGCTTAGACACGGACATCGTGTGGATGGACTTGGAGAT
GACCGGGCTGGACATTGAAAAGGACAAAATCCTCGAGGTGGCCTGCATCA
TTACGGACCAGGACCTGAACGTGAAGTCGGAGGGACCATGCTTTGCCATC
AACCATCCGCAGGAGGTCTACGACTCGATGAACGAGTGGTGCATGAAACA
TCATTACAATTCAGGTCTTATTGATCGATGCAAGAGCTCGGATGTGAATC
TCGAAGAAGCCTCCAATCTAGTGCTATCCTATCTCGAGAAGAACATACCA
AAGCGCGCCTGTCCGCTTGGTGGGAACTCCGTCTACACCGACCGACTATT
CATTATGAAATTCATGCCATTGGTAGATGCTTACCTGCATTACCGCATCG
TCGATGTGTCCACCATCAAGGAACTGGCCAAGCGATGGCATCCCGCAATT
CTGGATTCCGCTCCCAAAAAATCTTTCACGCATCGTAGTCTGGACGACAT
CCGAGAAAGCATCAAAGAGCTTGCGTATTACAAAGCGAACTTATTTAAAG
CAAGCTTTCTAGACCAT

BO04087.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10214-RA 636 CG10214-PA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10214-RA 970 CG10214-RA 91..723 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23766766..23767398 649..17 3165 100 Minus
Blast to na_te.dros performed 2014-11-27 19:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 1376..1429 383..437 110 69.1 Plus

BO04087.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:31 Download gff for BO04087.complete
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 1..636 17..653 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:17 Download gff for BO04087.complete
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 46..693 9..657 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:34 Download gff for BO04087.complete
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 91..723 17..651 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:31 Download gff for BO04087.complete
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 46..693 9..657 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:17 Download gff for BO04087.complete
Subject Subject Range Query Range Percent Splice Strand
CG10214-RA 91..723 17..651 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:17 Download gff for BO04087.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23766764..23767398 17..651 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:34 Download gff for BO04087.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19592486..19593120 17..651 99   Minus

BO04087.pep Sequence

Translation from 16 to 667

> BO04087.pep
MLAHLRRVGLSLNRQIRSHIAFNSNDRMSSTCGLDTDIVWMDLEMTGLDI
EKDKILEVACIITDQDLNVKSEGPCFAINHPQEVYDSMNEWCMKHHYNSG
LIDRCKSSDVNLEEASNLVLSYLEKNIPKRACPLGGNSVYTDRLFIMKFM
PLVDAYLHYRIVDVSTIKELAKRWHPAILDSAPKKSFTHRSLDDIRESIK
ELAYYKANLFKASFLDH

BO04087.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10214-PA 211 CG10214-PA 1..211 1..211 1113 100 Plus