Clone BO04093 Report

Search the DGRC for BO04093

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG10038-RA
Protein status:BO04093.pep: validated full length
Sequenced Size:1009

Clone Sequence Records

BO04093.3prime Sequence

924 bp (788 high quality bases) assembled on 2005-12-01

> BO04093.3prime
ATGGTCTAGAAAGCTTGCCTTCTTATTCGCTCGCTGTTCATACTTTTCCT
CAATGAACTTGAACACGGAATCGATGGCCGAGTAAGAGGTCCATTCGTGC
TTAGTGTGGCCAGCGGAAATCCTCCGGATGCTGCTCTTTGACTGTGAAAC
GGGTGTGTCTAAGGGTGTGTTGCTGGCAACCCAATCGCAGGCCACATCGC
ACAGGTACTCCTTGTTCTTCGCTTGGGGACTTCCCATGGCGGCATCAGTG
AAGGCAATGGCAAAAACGGATTCTTTAAAGAAATCCGGAAACCGCTCCAC
CAAATCAAGAGTAAGACTGCCACCATAACTGTGGGCCACAATGGCCACAC
TCTCGGGTTTCGCGGGCAATACAATATTCTTCCACACATATTTAACGTGC
TCTACGGACGTATTGACGCCCTTGATGGGATTCTCCTTACCATTGTAGAA
TCGTGTGCAATCGTTGGCATTGGTGATGAGGAGATCGTATCCCAGTTTTT
GGGCCTGTCGCACATAAGGCAGCTGGGTACCGTGGTCCAAGGAATTGTTA
ATAATTAAACTTCTGGCCCACTGTCCGGCTTTAACGTATCCACTGCCATG
GATGAGGACTAGCAACTTTTTGGACTGCGACAGCTTTGCCGGTTGCGAGA
ATACAAACGAAGACCGCTCTGGAGGCTGGTCAAAAGGGATGTAGGTGCGA
CTAAGACCGTTTTTCTCCAGCAAAGCGTAGACAATTTCTGGGATTTGGTT
GGCTAGCTTCTGGTAGTGCTTCTCGTTTTCGGCGGCGTCGTCGCTGACGT
TGTAGGAAAAGAGTTCCTTGCCAGGCTCCCCAGTGGCGGGATCGACTTTG
CGCAGCACTCCTTCTCCATCGAATGCATATCAAAAGTTTTTCAGCTGGAT
GAGAGCCTCCTCGCATTTGCTAGC

BO04093.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-PA 978 CG10038-RA 70..975 924..19 4480 99.7 Minus
CG10038-PB 930 CG10038-RB 22..927 924..19 4480 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-RB 1134 CG10038-RB 133..1038 924..19 4500 99.8 Minus
CG10038-RA 1212 CG10038-RA 211..1116 924..19 4500 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12349083..12349375 19..311 1435 99.3 Plus
3R 32079331 3R 12349418..12349682 297..561 1325 100 Plus
3R 32079331 3R 12349795..12349982 560..747 940 100 Plus
3R 32079331 3R 12350195..12350312 748..865 590 100 Plus
3R 32079331 3R 12350374..12350434 864..924 275 96.7 Plus
Blast to na_te.dros performed on 2015-02-13 05:28:23 has no hits.

BO04093.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:21 Download gff for BO04093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10038-PB 22..930 16..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:22 Download gff for BO04093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10038-PB 22..930 16..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:52:54 Download gff for BO04093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 176..1088 13..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:42 Download gff for BO04093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 211..1123 13..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:42 Download gff for BO04093.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12349076..12349364 13..300 98 <- Plus
3R 12349422..12349680 301..559 100 <- Plus
3R 12349795..12349982 560..747 100 <- Plus
3R 12350195..12350310 748..863 100 <- Plus
3R 12350374..12350434 864..924 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:52:54 Download gff for BO04093.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8174798..8175086 13..300 98 <- Plus
arm_3R 8175144..8175402 301..559 100 <- Plus
arm_3R 8175517..8175704 560..747 100 <- Plus
arm_3R 8175917..8176032 748..863 100 <- Plus
arm_3R 8176096..8176156 864..924 96   Plus

BO04093.5prime Sequence

825 bp (772 high quality bases) assembled on 2005-12-01

> BO04093.5prime
GAAGTTATCAGTCGACATGTGGTCTAGGCTTATTCAAATATTTCGACCCC
TCAGAAGTTTTCGAATGTCGCACTCACCGCCGCCGGCTAGCAATTGCGAG
GAGGCTCTCATCCAGCTGAAAAACTTTGGATATGCATTCGATGGAGAAGG
AGTGCTGCGCAAAGTCGATCCCGCCACTGGGGAGCCTGGCAAGGAACTCT
TTTCCTACAACGTCAGCGACGACGCCGCCGAAAACGAGAAGCACTACCAG
AAGCTAGCCAACCAAATCCCAGAAATTGTCTACGCTTTGCTGGAGAAAAA
CGGTCTTAGTCGCACCTACATCCCTTTTGACCAGCCTCCAGAGCGGTCTT
CGTTTGTATTCTCGCAACCGGCAAAGCTGTCGCAGTCCAAAAAGTTGCTA
GTCCTCATCCATGGCAGTGGATACGTTAAAGCCGGACAGTGGGCCAGAAG
TTTAATTATTAACAATTCCTTGGACCACGGTACCCAGCTGCCTTATGTGC
GACAGGCCCAAAAACTGGGATACGATCTCCTCATCACCAATGCCAACGAT
TGCACACGATTCTACAATGGTAAGGAGAATCCCATCAAGGGCGTCAATAC
GTCCGTAGAGCACGTTAAATATGTGTGGAAGAATATTGTATTGCCCGCGA
AACCCGAGAGTGTGGCCATTGTGGCCCACAGTTATGGTGGCAGTCTTACT
CTTGATTTGGTGGAGCGGTTTCCGGATTTCTTTAAAGAATCCGTTTTTGC
CATTGCCTTCACTGATGCCGCCATGGGAAGTCCCCAAGCGAAGAACAAGG
AGTACCTGTGCGATGTGGCCTGCGA

BO04093.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-PA 978 CG10038-RA 1..809 17..825 4045 100 Plus
CG10038-PB 930 CG10038-RB 1..761 65..825 3805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-RA 1212 CG10038-RA 142..950 17..825 4045 100 Plus
CG10038-RB 1134 CG10038-RB 102..872 55..825 3855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12349418..12349682 713..449 1325 100 Minus
3R 32079331 3R 12349795..12349982 450..263 940 100 Minus
3R 32079331 3R 12350374..12350503 146..17 650 100 Minus
3R 32079331 3R 12349249..12349375 825..699 605 98.4 Minus
3R 32079331 3R 12350195..12350312 262..145 590 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:39:31 has no hits.

BO04093.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:22 Download gff for BO04093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10038-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:22 Download gff for BO04093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10038-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:31 Download gff for BO04093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 104..914 11..824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:47 Download gff for BO04093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 139..949 11..824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:47 Download gff for BO04093.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12349250..12349364 710..824 100 <- Minus
3R 12349422..12349680 451..709 100 <- Minus
3R 12349795..12349982 263..450 100 <- Minus
3R 12350195..12350310 147..262 100 <- Minus
3R 12350374..12350506 11..146 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:31 Download gff for BO04093.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8174972..8175086 710..824 100 <- Minus
arm_3R 8175144..8175402 451..709 100 <- Minus
arm_3R 8175517..8175704 263..450 100 <- Minus
arm_3R 8175917..8176032 147..262 100 <- Minus
arm_3R 8176096..8176228 11..146 97   Minus

BO04093.complete Sequence

1009 bp (1009 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ629638

> BO04093.complete
GAAGTTATCAGTCGACATGTGGTCTAGGCTTATTCAAATATTTCGACCCC
TCAGAAGTTTTCGAATGTCGCACTCACCGCCGCCGGCTAGCAATTGCGAG
GAGGCTCTCATCCAGCTGAAAAACTTTGGATATGCATTCGATGGAGAAGG
AGTGCTGCGCAAAGTCGATCCCGCCACTGGGGAGCCTGGCAAGGAACTCT
TTTCCTACAACGTCAGCGACGACGCCGCCGAAAACGAGAAGCACTACCAG
AAGCTAGCCAACCAAATCCCAGAAATTGTCTACGCTTTGCTGGAGAAAAA
CGGTCTTAGTCGCACCTACATCCCTTTTGACCAGCCTCCAGAGCGGTCTT
CGTTTGTATTCTCGCAACCGGCAAAGCTGTCGCAGTCCAAAAAGTTGCTA
GTCCTCATCCATGGCAGTGGATACGTTAAAGCCGGACAGTGGGCCAGAAG
TTTAATTATTAACAATTCCTTGGACCACGGTACCCAGCTGCCTTATGTGC
GACAGGCCCAAAAACTGGGATACGATCTCCTCATCACCAATGCCAACGAT
TGCACACGATTCTACAATGGTAAGGAGAATCCCATCAAGGGCGTCAATAC
GTCCGTAGAGCACGTTAAATATGTGTGGAAGAATATTGTATTGCCCGCGA
AACCCGAGAGTGTGGCCATTGTGGCCCACAGTTATGGTGGCAGTCTTACT
CTTGATTTGGTGGAGCGGTTTCCGGATTTCTTTAAAGAATCCGTTTTTGC
CATTGCCTTCACTGATGCCGCCATGGGAAGTCCCCAAGCGAAGAACAAGG
AGTACCTGTGCGATGTGGCCTGCGATTGGGTTGCCAGCAACACACCCTTA
GACACACCCGTTTCACAGTCAAAGAGCAGCATCCGGAGGATTTCCGCTGG
CCACACTAAGCACGAATGGACCTCTTACTCGGCCATCGATTCCGTGTTCA
AGTTCATTGAGGAAAAGTATGAACAGCGAGCGAATAAGAAGGCAAGCTTT
CTAGACCAT

BO04093.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-RA 978 CG10038-PA 1..975 17..991 4875 100 Plus
CG10038-RB 930 CG10038-PB 1..927 65..991 4635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-RA 1212 CG10038-RA 142..1116 17..991 4875 100 Plus
CG10038-RB 1134 CG10038-RB 102..1038 55..991 4685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12349083..12349375 991..699 1435 99.3 Minus
3R 32079331 3R 12349418..12349682 713..449 1325 100 Minus
3R 32079331 3R 12349795..12349982 450..263 940 100 Minus
3R 32079331 3R 12350374..12350503 146..17 650 100 Minus
3R 32079331 3R 12350195..12350312 262..145 590 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:28:30 has no hits.

BO04093.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:52 Download gff for BO04093.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 1..978 17..994 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:11 Download gff for BO04093.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 104..1088 11..997 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:00 Download gff for BO04093.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 107..1081 17..993 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:52 Download gff for BO04093.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 104..1088 11..997 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:13 Download gff for BO04093.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 142..1116 17..993 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:13 Download gff for BO04093.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12349079..12349364 710..993 99 <- Minus
3R 12349422..12349680 451..709 100 <- Minus
3R 12349795..12349982 263..450 100 <- Minus
3R 12350195..12350310 147..262 100 <- Minus
3R 12350374..12350503 17..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:00 Download gff for BO04093.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8176096..8176225 17..146 100   Minus
arm_3R 8175517..8175704 263..450 100 <- Minus
arm_3R 8174801..8175086 710..993 99 <- Minus
arm_3R 8175144..8175402 451..709 100 <- Minus
arm_3R 8175917..8176032 147..262 100 <- Minus

BO04093.pep Sequence

Translation from 16 to 1009

> BO04093.pep
MWSRLIQIFRPLRSFRMSHSPPPASNCEEALIQLKNFGYAFDGEGVLRKV
DPATGEPGKELFSYNVSDDAAENEKHYQKLANQIPEIVYALLEKNGLSRT
YIPFDQPPERSSFVFSQPAKLSQSKKLLVLIHGSGYVKAGQWARSLIINN
SLDHGTQLPYVRQAQKLGYDLLITNANDCTRFYNGKENPIKGVNTSVEHV
KYVWKNIVLPAKPESVAIVAHSYGGSLTLDLVERFPDFFKESVFAIAFTD
AAMGSPQAKNKEYLCDVACDWVASNTPLDTPVSQSKSSIRRISAGHTKHE
WTSYSAIDSVFKFIEEKYEQRANKKASFLDH

BO04093.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-PA 325 CG10038-PA 1..325 1..325 1704 100 Plus
CG10038-PB 309 CG10038-PB 1..309 17..325 1620 100 Plus