Clone Sequence Records
BO04093.3prime Sequence
924 bp (788 high quality bases) assembled on 2005-12-01
> BO04093.3prime
ATGGTCTAGAAAGCTTGCCTTCTTATTCGCTCGCTGTTCATACTTTTCCT
CAATGAACTTGAACACGGAATCGATGGCCGAGTAAGAGGTCCATTCGTGC
TTAGTGTGGCCAGCGGAAATCCTCCGGATGCTGCTCTTTGACTGTGAAAC
GGGTGTGTCTAAGGGTGTGTTGCTGGCAACCCAATCGCAGGCCACATCGC
ACAGGTACTCCTTGTTCTTCGCTTGGGGACTTCCCATGGCGGCATCAGTG
AAGGCAATGGCAAAAACGGATTCTTTAAAGAAATCCGGAAACCGCTCCAC
CAAATCAAGAGTAAGACTGCCACCATAACTGTGGGCCACAATGGCCACAC
TCTCGGGTTTCGCGGGCAATACAATATTCTTCCACACATATTTAACGTGC
TCTACGGACGTATTGACGCCCTTGATGGGATTCTCCTTACCATTGTAGAA
TCGTGTGCAATCGTTGGCATTGGTGATGAGGAGATCGTATCCCAGTTTTT
GGGCCTGTCGCACATAAGGCAGCTGGGTACCGTGGTCCAAGGAATTGTTA
ATAATTAAACTTCTGGCCCACTGTCCGGCTTTAACGTATCCACTGCCATG
GATGAGGACTAGCAACTTTTTGGACTGCGACAGCTTTGCCGGTTGCGAGA
ATACAAACGAAGACCGCTCTGGAGGCTGGTCAAAAGGGATGTAGGTGCGA
CTAAGACCGTTTTTCTCCAGCAAAGCGTAGACAATTTCTGGGATTTGGTT
GGCTAGCTTCTGGTAGTGCTTCTCGTTTTCGGCGGCGTCGTCGCTGACGT
TGTAGGAAAAGAGTTCCTTGCCAGGCTCCCCAGTGGCGGGATCGACTTTG
CGCAGCACTCCTTCTCCATCGAATGCATATCAAAAGTTTTTCAGCTGGAT
GAGAGCCTCCTCGCATTTGCTAGC
BO04093.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10038-PA | 978 | CG10038-RA | 70..975 | 924..19 | 4480 | 99.7 | Minus |
CG10038-PB | 930 | CG10038-RB | 22..927 | 924..19 | 4480 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10038-RB | 1134 | CG10038-RB | 133..1038 | 924..19 | 4500 | 99.8 | Minus |
CG10038-RA | 1212 | CG10038-RA | 211..1116 | 924..19 | 4500 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12349083..12349375 | 19..311 | 1435 | 99.3 | Plus |
3R | 32079331 | 3R | 12349418..12349682 | 297..561 | 1325 | 100 | Plus |
3R | 32079331 | 3R | 12349795..12349982 | 560..747 | 940 | 100 | Plus |
3R | 32079331 | 3R | 12350195..12350312 | 748..865 | 590 | 100 | Plus |
3R | 32079331 | 3R | 12350374..12350434 | 864..924 | 275 | 96.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:28:23 has no hits.
BO04093.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:21 Download gff for
BO04093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-PB | 22..930 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:22 Download gff for
BO04093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-PB | 22..930 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:52:54 Download gff for
BO04093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 176..1088 | 13..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:42 Download gff for
BO04093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 211..1123 | 13..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:42 Download gff for
BO04093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12349076..12349364 | 13..300 | 98 | <- | Plus |
3R | 12349422..12349680 | 301..559 | 100 | <- | Plus |
3R | 12349795..12349982 | 560..747 | 100 | <- | Plus |
3R | 12350195..12350310 | 748..863 | 100 | <- | Plus |
3R | 12350374..12350434 | 864..924 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:52:54 Download gff for
BO04093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8174798..8175086 | 13..300 | 98 | <- | Plus |
arm_3R | 8175144..8175402 | 301..559 | 100 | <- | Plus |
arm_3R | 8175517..8175704 | 560..747 | 100 | <- | Plus |
arm_3R | 8175917..8176032 | 748..863 | 100 | <- | Plus |
arm_3R | 8176096..8176156 | 864..924 | 96 | | Plus |
BO04093.5prime Sequence
825 bp (772 high quality bases) assembled on 2005-12-01
> BO04093.5prime
GAAGTTATCAGTCGACATGTGGTCTAGGCTTATTCAAATATTTCGACCCC
TCAGAAGTTTTCGAATGTCGCACTCACCGCCGCCGGCTAGCAATTGCGAG
GAGGCTCTCATCCAGCTGAAAAACTTTGGATATGCATTCGATGGAGAAGG
AGTGCTGCGCAAAGTCGATCCCGCCACTGGGGAGCCTGGCAAGGAACTCT
TTTCCTACAACGTCAGCGACGACGCCGCCGAAAACGAGAAGCACTACCAG
AAGCTAGCCAACCAAATCCCAGAAATTGTCTACGCTTTGCTGGAGAAAAA
CGGTCTTAGTCGCACCTACATCCCTTTTGACCAGCCTCCAGAGCGGTCTT
CGTTTGTATTCTCGCAACCGGCAAAGCTGTCGCAGTCCAAAAAGTTGCTA
GTCCTCATCCATGGCAGTGGATACGTTAAAGCCGGACAGTGGGCCAGAAG
TTTAATTATTAACAATTCCTTGGACCACGGTACCCAGCTGCCTTATGTGC
GACAGGCCCAAAAACTGGGATACGATCTCCTCATCACCAATGCCAACGAT
TGCACACGATTCTACAATGGTAAGGAGAATCCCATCAAGGGCGTCAATAC
GTCCGTAGAGCACGTTAAATATGTGTGGAAGAATATTGTATTGCCCGCGA
AACCCGAGAGTGTGGCCATTGTGGCCCACAGTTATGGTGGCAGTCTTACT
CTTGATTTGGTGGAGCGGTTTCCGGATTTCTTTAAAGAATCCGTTTTTGC
CATTGCCTTCACTGATGCCGCCATGGGAAGTCCCCAAGCGAAGAACAAGG
AGTACCTGTGCGATGTGGCCTGCGA
BO04093.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10038-PA | 978 | CG10038-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
CG10038-PB | 930 | CG10038-RB | 1..761 | 65..825 | 3805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10038-RA | 1212 | CG10038-RA | 142..950 | 17..825 | 4045 | 100 | Plus |
CG10038-RB | 1134 | CG10038-RB | 102..872 | 55..825 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12349418..12349682 | 713..449 | 1325 | 100 | Minus |
3R | 32079331 | 3R | 12349795..12349982 | 450..263 | 940 | 100 | Minus |
3R | 32079331 | 3R | 12350374..12350503 | 146..17 | 650 | 100 | Minus |
3R | 32079331 | 3R | 12349249..12349375 | 825..699 | 605 | 98.4 | Minus |
3R | 32079331 | 3R | 12350195..12350312 | 262..145 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:39:31 has no hits.
BO04093.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:22 Download gff for
BO04093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:22 Download gff for
BO04093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:31 Download gff for
BO04093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 104..914 | 11..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:47 Download gff for
BO04093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 139..949 | 11..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:47 Download gff for
BO04093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12349250..12349364 | 710..824 | 100 | <- | Minus |
3R | 12349422..12349680 | 451..709 | 100 | <- | Minus |
3R | 12349795..12349982 | 263..450 | 100 | <- | Minus |
3R | 12350195..12350310 | 147..262 | 100 | <- | Minus |
3R | 12350374..12350506 | 11..146 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:31 Download gff for
BO04093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8174972..8175086 | 710..824 | 100 | <- | Minus |
arm_3R | 8175144..8175402 | 451..709 | 100 | <- | Minus |
arm_3R | 8175517..8175704 | 263..450 | 100 | <- | Minus |
arm_3R | 8175917..8176032 | 147..262 | 100 | <- | Minus |
arm_3R | 8176096..8176228 | 11..146 | 97 | | Minus |
BO04093.complete Sequence
1009 bp (1009 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ629638
> BO04093.complete
GAAGTTATCAGTCGACATGTGGTCTAGGCTTATTCAAATATTTCGACCCC
TCAGAAGTTTTCGAATGTCGCACTCACCGCCGCCGGCTAGCAATTGCGAG
GAGGCTCTCATCCAGCTGAAAAACTTTGGATATGCATTCGATGGAGAAGG
AGTGCTGCGCAAAGTCGATCCCGCCACTGGGGAGCCTGGCAAGGAACTCT
TTTCCTACAACGTCAGCGACGACGCCGCCGAAAACGAGAAGCACTACCAG
AAGCTAGCCAACCAAATCCCAGAAATTGTCTACGCTTTGCTGGAGAAAAA
CGGTCTTAGTCGCACCTACATCCCTTTTGACCAGCCTCCAGAGCGGTCTT
CGTTTGTATTCTCGCAACCGGCAAAGCTGTCGCAGTCCAAAAAGTTGCTA
GTCCTCATCCATGGCAGTGGATACGTTAAAGCCGGACAGTGGGCCAGAAG
TTTAATTATTAACAATTCCTTGGACCACGGTACCCAGCTGCCTTATGTGC
GACAGGCCCAAAAACTGGGATACGATCTCCTCATCACCAATGCCAACGAT
TGCACACGATTCTACAATGGTAAGGAGAATCCCATCAAGGGCGTCAATAC
GTCCGTAGAGCACGTTAAATATGTGTGGAAGAATATTGTATTGCCCGCGA
AACCCGAGAGTGTGGCCATTGTGGCCCACAGTTATGGTGGCAGTCTTACT
CTTGATTTGGTGGAGCGGTTTCCGGATTTCTTTAAAGAATCCGTTTTTGC
CATTGCCTTCACTGATGCCGCCATGGGAAGTCCCCAAGCGAAGAACAAGG
AGTACCTGTGCGATGTGGCCTGCGATTGGGTTGCCAGCAACACACCCTTA
GACACACCCGTTTCACAGTCAAAGAGCAGCATCCGGAGGATTTCCGCTGG
CCACACTAAGCACGAATGGACCTCTTACTCGGCCATCGATTCCGTGTTCA
AGTTCATTGAGGAAAAGTATGAACAGCGAGCGAATAAGAAGGCAAGCTTT
CTAGACCAT
BO04093.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10038-RA | 978 | CG10038-PA | 1..975 | 17..991 | 4875 | 100 | Plus |
CG10038-RB | 930 | CG10038-PB | 1..927 | 65..991 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10038-RA | 1212 | CG10038-RA | 142..1116 | 17..991 | 4875 | 100 | Plus |
CG10038-RB | 1134 | CG10038-RB | 102..1038 | 55..991 | 4685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12349083..12349375 | 991..699 | 1435 | 99.3 | Minus |
3R | 32079331 | 3R | 12349418..12349682 | 713..449 | 1325 | 100 | Minus |
3R | 32079331 | 3R | 12349795..12349982 | 450..263 | 940 | 100 | Minus |
3R | 32079331 | 3R | 12350374..12350503 | 146..17 | 650 | 100 | Minus |
3R | 32079331 | 3R | 12350195..12350312 | 262..145 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:28:30 has no hits.
BO04093.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:52 Download gff for
BO04093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 1..978 | 17..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:11 Download gff for
BO04093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 104..1088 | 11..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:00 Download gff for
BO04093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 107..1081 | 17..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:52 Download gff for
BO04093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 104..1088 | 11..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:13 Download gff for
BO04093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10038-RA | 142..1116 | 17..993 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:13 Download gff for
BO04093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12349079..12349364 | 710..993 | 99 | <- | Minus |
3R | 12349422..12349680 | 451..709 | 100 | <- | Minus |
3R | 12349795..12349982 | 263..450 | 100 | <- | Minus |
3R | 12350195..12350310 | 147..262 | 100 | <- | Minus |
3R | 12350374..12350503 | 17..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:00 Download gff for
BO04093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8176096..8176225 | 17..146 | 100 | | Minus |
arm_3R | 8175517..8175704 | 263..450 | 100 | <- | Minus |
arm_3R | 8174801..8175086 | 710..993 | 99 | <- | Minus |
arm_3R | 8175144..8175402 | 451..709 | 100 | <- | Minus |
arm_3R | 8175917..8176032 | 147..262 | 100 | <- | Minus |
BO04093.pep Sequence
Translation from 16 to 1009
> BO04093.pep
MWSRLIQIFRPLRSFRMSHSPPPASNCEEALIQLKNFGYAFDGEGVLRKV
DPATGEPGKELFSYNVSDDAAENEKHYQKLANQIPEIVYALLEKNGLSRT
YIPFDQPPERSSFVFSQPAKLSQSKKLLVLIHGSGYVKAGQWARSLIINN
SLDHGTQLPYVRQAQKLGYDLLITNANDCTRFYNGKENPIKGVNTSVEHV
KYVWKNIVLPAKPESVAIVAHSYGGSLTLDLVERFPDFFKESVFAIAFTD
AAMGSPQAKNKEYLCDVACDWVASNTPLDTPVSQSKSSIRRISAGHTKHE
WTSYSAIDSVFKFIEEKYEQRANKKASFLDH
BO04093.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10038-PA | 325 | CG10038-PA | 1..325 | 1..325 | 1704 | 100 | Plus |
CG10038-PB | 309 | CG10038-PB | 1..309 | 17..325 | 1620 | 100 | Plus |