Clone Sequence Records
BO04094.3prime Sequence
956 bp (784 high quality bases) assembled on 2005-12-01
> BO04094.3prime
ATGGTCTAGAAAGCTTGCAAAAGTCTTTGCCGGCACATACTTCCTTGATG
GCGCCGAGGGAGCGAATGAGGAGGTGGACTTCTGCACAAAGGAGCTCTGC
TGCTGGACCCCCTGGACCCCCTGGTTAATAGACTGCAGCTGAACAATGGG
CTGACCCTGTGGCTGGATAATGGTTGGCGCCTGAGAGTGGATGATGGTTT
GGCCAGCTTGGGAGTGCTGGGGCACAAAGCTGCCCAGGTTAAGGGAGCCA
CTCGAAACGCTGGCGATGGGAGCCACTCCCTCGTCCGAAATGTGGGTTGC
ACCTCCCAAGGCGTCGTACTGGGCCTGGATTTCCTGCTGGGCGCGCTGGG
CCTCTTCCTGGGTCTTGTACTTAATGAAGTAGACCTCCGGCTTTTGAACC
TTGGCCTCAGACTGGGTAACCTGCAGCTGCTGCTGGATCTCAGTGAGATC
GGGCTTTTTAGAGAGCACGTAGATGACGGTCTTTTCCTCGTTGCTTGACT
GGGCCCGCTTCAGGGCCGCGGCGGTATATTTCAGATTCTGGGAAGGCGCT
TTAATGAAGACGATCCGGTAGTTCTTGCGGATGGGCACATTCTCCAGAAG
TGGCTCGTCCTGCCGCAGTTCCTCATTCTCCTCGGGGGCGGAGTGGATGT
AAATGTCCTTGGTAACGATAGCGGGGCGCTGGACGAACTGGGTCTGAAGG
GCTTGCTGCGGTTGCTGCTGGTACACGATTTGCTGAGGCTGCTGCTGCAC
AGTGCTGATCAGGTTTTGCTGGGGCGAAGCAGTAAGGAAAGTCTCCTTTG
GGAGTGAGATCGACAAAGGAGCGGGAGCGGGGGCGGGAGCAGGAGCGGCA
ACGATGGTCTGCACGGCTTTGATGGCTGGCTGGACACCGATCGCGGGCTG
AGCACGGGCCTGTGGGAAAGATGGGACGGCGCCACTTGCGTATTTTCCAC
TTGACG
BO04094.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14639-PA | 1065 | CG14639-RA | 125..1062 | 956..19 | 4590 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlF-RA | 1235 | CG14639-RA | 166..1103 | 956..19 | 4630 | 99.6 | Minus |
TwdlV-RA | 1067 | CG14640-RA | 556..638 | 393..311 | 250 | 86.7 | Minus |
TwdlY-RA | 1034 | CG32570-RA | 616..696 | 393..313 | 225 | 85.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:21:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4247244..4248181 | 956..19 | 4630 | 99.6 | Minus |
3R | 32079331 | 3R | 4255322..4255404 | 393..311 | 250 | 86.7 | Minus |
X | 23542271 | X | 16735562..16735642 | 393..313 | 225 | 85.2 | Minus |
Blast to na_te.dros performed 2015-02-11 02:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-C | 11124 | TART-C TARTC 11124bp | 9163..9225 | 764..704 | 130 | 69.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2393 | 748..703 | 113 | 71.7 | Minus |
BO04094.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:23 Download gff for
BO04094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14639-PA | 125..1065 | 15..956 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:24 Download gff for
BO04094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14639-PA | 125..1065 | 15..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:46:23 Download gff for
BO04094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlF-RA | 166..1106 | 15..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:48:24 Download gff for
BO04094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlF-RA | 166..1106 | 15..956 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:48:24 Download gff for
BO04094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4247244..4248187 | 14..956 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:46:23 Download gff for
BO04094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 72966..73909 | 14..956 | 99 | -> | Minus |
BO04094.5prime Sequence
874 bp (736 high quality bases) assembled on 2005-12-01
> BO04094.5prime
GAAGTTATCAGTCGACATGAAGCAGTTCGTTGTTCTAATGTGCCTGGTGG
CCCTCACAGCAACAGCTCCTCAGGGATACAAGTACCAACCTCAGCTGCCA
GCCCTTCCCATTGGCAATCTTCGTCCTCTGACACCCATTTCGTCAAGTGG
AATATACGCAAGTGGCGCCGTCCCATCTTTCCCACAGGCCGGTGCTCAGC
CCGCGATCGGTGTCCAGCCAGCCATTCAAGCCGTGCAGACCATCGTTGCC
GCTCCTGCTCCCGCCCCCGCTCCCGCTCCTTTGTCGATCTCACTCCCAAA
GGAGACTTTCCTTACTGCTTCGCCCCAGCAAAACCTGATCAGCACTGTGC
AGCAGCAGCCTCAGCAAATCGTGTACCAGCAGCAACCGCAGCAAGCCCTT
CAGACCCAGTTCGTCCAGCGCCCCGCTATCGTTACCAAGGACATTTACAT
CCACTCCGCCCCCGAGGAGAATGAGGAACTGCGGCAGGACGAGCCACTTC
TGGAGAATGTGCCCATCCGCAAGAACTACCGGATCGTCTTCATTAAAGCG
CCTTCCCAGAATCTGAAATATACCGCCGCGGCCCTGAAGCGGGCCCAGTC
AAGCAACGAGGAAAAGACCGTCATCTACGTGCTCTCTAAAAAGCCCGATC
TCACTGAGATCCAGCAGCAGCTGCAGGTTACCCAGTCTGAGGCCAAGGTT
CAAAAGCCGGAGGTCTACTTCATTAAGTACAAGACCCAGGAAGAGGCCCA
GCGCGCCCAGCAGGAAATCCAGGCCCAGTACGACGCCTTGGGAGGTGCAA
CCCACATTTCGGACGAGGGAGTGGCTCCCATCGCCAGCGTTTCGAGTGGC
TCCCTTAACCTGGGCAGCTTTGTG
BO04094.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14639-PA | 1065 | CG14639-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlF-RA | 1235 | CG14639-RA | 42..899 | 17..874 | 4290 | 100 | Plus |
TwdlV-RA | 1067 | CG14640-RA | 556..638 | 704..786 | 250 | 86.7 | Plus |
TwdlY-RA | 1034 | CG32570-RA | 616..696 | 704..784 | 225 | 85.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4247143..4247977 | 40..874 | 4175 | 100 | Plus |
3R | 32079331 | 3R | 4255322..4255404 | 704..786 | 250 | 86.7 | Plus |
X | 23542271 | X | 16735562..16735642 | 704..784 | 225 | 85.2 | Plus |
Blast to na_te.dros performed 2015-02-11 15:27:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-C | 11124 | TART-C TARTC 11124bp | 9163..9225 | 333..393 | 130 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2393 | 349..394 | 113 | 71.7 | Plus |
BO04094.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:23 Download gff for
BO04094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14639-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:25 Download gff for
BO04094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14639-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:07 Download gff for
BO04094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlF-RA | 35..899 | 10..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:26 Download gff for
BO04094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlF-RA | 35..899 | 10..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:26 Download gff for
BO04094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4247144..4247977 | 41..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:07 Download gff for
BO04094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 72866..73699 | 41..874 | 100 | | Plus |
BO04094.complete Sequence
1096 bp (1096 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629639
> BO04094.complete
GAAGTTATCAGTCGACATGAAGCAGTTCGTTGTTCTAATGTGCCTGGTGG
CCCTCACAGCAACAGCTCCTCAGGGATACAAGTACCAACCTCAGCTGCCA
GCCCTTCCCATTGGCAATCTTCGTCCTCTGACACCCATTTCGTCAAGTGG
AATATACGCAAGTGGCGCCGTCCCATCTTTCCCACAGGCCGGTGCTCAGC
CCGCGATCGGTGTCCAGCCAGCCATTCAAGCCGTGCAGACCATCGTTGCC
GCTCCTGCTCCCGCCCCCGCTCCCGCTCCTTTGTCGATCTCACTCCCAAA
GGAGACTTTCCTTACTGCTTCGCCCCAGCAAAACCTGATCAGCACTGTGC
AGCAGCAGCCTCAGCAAATCGTGTACCAGCAGCAACCGCAGCAAGCCCTT
CAGACCCAGTTCGTCCAGCGCCCCGCTATCGTTACCAAGGACATTTACAT
CCACTCCGCCCCCGAGGAGAATGAGGAACTGCGGCAGGACGAGCCACTTC
TGGAGAATGTGCCCATCCGCAAGAACTACCGGATCGTCTTCATTAAAGCG
CCTTCCCAGAATCTGAAATATACCGCCGCGGCCCTGAAGCGGGCCCAGTC
AAGCAACGAGGAAAAGACCGTCATCTACGTGCTCTCTAAAAAGCCCGATC
TCACTGAGATCCAGCAGCAGCTGCAGGTTACCCAGTCTGAGGCCAAGGTT
CAAAAGCCGGAGGTCTACTTCATTAAGTACAAGACCCAGGAAGAGGCCCA
GCGCGCCCAGCAGGAAATCCAGGCCCAGTACGACGCCTTGGGAGGTGCAA
CCCACATTTCGGACGAGGGAGTGGCTCCCATCGCCAGCGTTTCGAGTGGC
TCCCTTAACCTGGGCAGCTTTGTGCCCCAGCACTCCCAAGCTGGCCAAAC
CATCATCCACTCTCAGGCGCCAACCATTATCCAGCCACAGGGTCAGCCCA
TTGTTCAGCTGCAGTCTATTAACCAGGGGGTCCAGGGGGTCCAGCAGCAG
AGCTCCTTTGTGCAGAAGTCCACCTCCTCATTCGCTCCCTCGGCGCCATC
AAGGAAGTATGTGCCGGCAAAGACTTTTGCAAGCTTTCTAGACCAT
BO04094.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:28:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlF-RA | 1065 | CG14639-PA | 1..1062 | 17..1078 | 5310 | 100 | Plus |
TwdlV-RA | 756 | CG14640-PA | 484..566 | 704..786 | 250 | 86.7 | Plus |
TwdlY-RA | 744 | CG32570-PA | 490..570 | 704..784 | 225 | 85.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:28:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlF-RA | 1235 | CG14639-RA | 42..1103 | 17..1078 | 5310 | 100 | Plus |
TwdlV-RA | 1067 | CG14640-RA | 556..638 | 704..786 | 250 | 86.7 | Plus |
TwdlY-RA | 1034 | CG32570-RA | 616..696 | 704..784 | 225 | 85.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4247143..4248181 | 40..1078 | 5195 | 100 | Plus |
3R | 32079331 | 3R | 4255322..4255404 | 704..786 | 250 | 86.7 | Plus |
X | 23542271 | X | 16735562..16735642 | 704..784 | 225 | 85.2 | Plus |
Blast to na_te.dros performed 2014-11-27 16:28:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-C | 11124 | TART-C TARTC 11124bp | 9163..9225 | 333..393 | 130 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2393 | 349..394 | 113 | 71.7 | Plus |
BO04094.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:48 Download gff for
BO04094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlF-RA | 1..1065 | 17..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:04 Download gff for
BO04094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlF-RA | 33..1104 | 10..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:53 Download gff for
BO04094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlF-RA | 42..1103 | 17..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:48 Download gff for
BO04094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlF-RA | 33..1104 | 10..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:12 Download gff for
BO04094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlF-RA | 42..1103 | 17..1080 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:12 Download gff for
BO04094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4247061..4247084 | 17..40 | 100 | -> | Plus |
3R | 4247144..4248181 | 41..1080 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:53 Download gff for
BO04094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 72783..72806 | 17..40 | 100 | -> | Plus |
arm_3R | 72866..73903 | 41..1080 | 99 | | Plus |
BO04094.pep Sequence
Translation from 16 to 1096
> BO04094.pep
MKQFVVLMCLVALTATAPQGYKYQPQLPALPIGNLRPLTPISSSGIYASG
AVPSFPQAGAQPAIGVQPAIQAVQTIVAAPAPAPAPAPLSISLPKETFLT
ASPQQNLISTVQQQPQQIVYQQQPQQALQTQFVQRPAIVTKDIYIHSAPE
ENEELRQDEPLLENVPIRKNYRIVFIKAPSQNLKYTAAALKRAQSSNEEK
TVIYVLSKKPDLTEIQQQLQVTQSEAKVQKPEVYFIKYKTQEEAQRAQQE
IQAQYDALGGATHISDEGVAPIASVSSGSLNLGSFVPQHSQAGQTIIHSQ
APTIIQPQGQPIVQLQSINQGVQGVQQQSSFVQKSTSSFAPSAPSRKYVP
AKTFASFLDH
BO04094.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlF-PA | 354 | CG14639-PA | 1..354 | 1..354 | 1770 | 100 | Plus |
TwdlG-PC | 278 | CG14643-PC | 3..246 | 4..275 | 424 | 41.2 | Plus |
TwdlG-PB | 278 | CG14643-PB | 3..246 | 4..275 | 424 | 41.2 | Plus |
TwdlG-PA | 278 | CG14643-PA | 3..246 | 4..275 | 424 | 41.2 | Plus |
TwdlV-PA | 251 | CG14640-PA | 1..233 | 1..296 | 374 | 37.7 | Plus |