Clone BO04094 Report

Search the DGRC for BO04094

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptTwdlF-RA
Protein status:BO04094.pep: validated full length
Sequenced Size:1096

Clone Sequence Records

BO04094.3prime Sequence

956 bp (784 high quality bases) assembled on 2005-12-01

> BO04094.3prime
ATGGTCTAGAAAGCTTGCAAAAGTCTTTGCCGGCACATACTTCCTTGATG
GCGCCGAGGGAGCGAATGAGGAGGTGGACTTCTGCACAAAGGAGCTCTGC
TGCTGGACCCCCTGGACCCCCTGGTTAATAGACTGCAGCTGAACAATGGG
CTGACCCTGTGGCTGGATAATGGTTGGCGCCTGAGAGTGGATGATGGTTT
GGCCAGCTTGGGAGTGCTGGGGCACAAAGCTGCCCAGGTTAAGGGAGCCA
CTCGAAACGCTGGCGATGGGAGCCACTCCCTCGTCCGAAATGTGGGTTGC
ACCTCCCAAGGCGTCGTACTGGGCCTGGATTTCCTGCTGGGCGCGCTGGG
CCTCTTCCTGGGTCTTGTACTTAATGAAGTAGACCTCCGGCTTTTGAACC
TTGGCCTCAGACTGGGTAACCTGCAGCTGCTGCTGGATCTCAGTGAGATC
GGGCTTTTTAGAGAGCACGTAGATGACGGTCTTTTCCTCGTTGCTTGACT
GGGCCCGCTTCAGGGCCGCGGCGGTATATTTCAGATTCTGGGAAGGCGCT
TTAATGAAGACGATCCGGTAGTTCTTGCGGATGGGCACATTCTCCAGAAG
TGGCTCGTCCTGCCGCAGTTCCTCATTCTCCTCGGGGGCGGAGTGGATGT
AAATGTCCTTGGTAACGATAGCGGGGCGCTGGACGAACTGGGTCTGAAGG
GCTTGCTGCGGTTGCTGCTGGTACACGATTTGCTGAGGCTGCTGCTGCAC
AGTGCTGATCAGGTTTTGCTGGGGCGAAGCAGTAAGGAAAGTCTCCTTTG
GGAGTGAGATCGACAAAGGAGCGGGAGCGGGGGCGGGAGCAGGAGCGGCA
ACGATGGTCTGCACGGCTTTGATGGCTGGCTGGACACCGATCGCGGGCTG
AGCACGGGCCTGTGGGAAAGATGGGACGGCGCCACTTGCGTATTTTCCAC
TTGACG

BO04094.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14639-PA 1065 CG14639-RA 125..1062 956..19 4590 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlF-RA 1235 CG14639-RA 166..1103 956..19 4630 99.6 Minus
TwdlV-RA 1067 CG14640-RA 556..638 393..311 250 86.7 Minus
TwdlY-RA 1034 CG32570-RA 616..696 393..313 225 85.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4247244..4248181 956..19 4630 99.6 Minus
3R 32079331 3R 4255322..4255404 393..311 250 86.7 Minus
X 23542271 X 16735562..16735642 393..313 225 85.2 Minus
Blast to na_te.dros performed 2015-02-11 02:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 9163..9225 764..704 130 69.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2393 748..703 113 71.7 Minus

BO04094.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:23 Download gff for BO04094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14639-PA 125..1065 15..956 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:24 Download gff for BO04094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14639-PA 125..1065 15..956 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:46:23 Download gff for BO04094.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 166..1106 15..956 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:48:24 Download gff for BO04094.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 166..1106 15..956 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:48:24 Download gff for BO04094.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4247244..4248187 14..956 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:46:23 Download gff for BO04094.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 72966..73909 14..956 99 -> Minus

BO04094.5prime Sequence

874 bp (736 high quality bases) assembled on 2005-12-01

> BO04094.5prime
GAAGTTATCAGTCGACATGAAGCAGTTCGTTGTTCTAATGTGCCTGGTGG
CCCTCACAGCAACAGCTCCTCAGGGATACAAGTACCAACCTCAGCTGCCA
GCCCTTCCCATTGGCAATCTTCGTCCTCTGACACCCATTTCGTCAAGTGG
AATATACGCAAGTGGCGCCGTCCCATCTTTCCCACAGGCCGGTGCTCAGC
CCGCGATCGGTGTCCAGCCAGCCATTCAAGCCGTGCAGACCATCGTTGCC
GCTCCTGCTCCCGCCCCCGCTCCCGCTCCTTTGTCGATCTCACTCCCAAA
GGAGACTTTCCTTACTGCTTCGCCCCAGCAAAACCTGATCAGCACTGTGC
AGCAGCAGCCTCAGCAAATCGTGTACCAGCAGCAACCGCAGCAAGCCCTT
CAGACCCAGTTCGTCCAGCGCCCCGCTATCGTTACCAAGGACATTTACAT
CCACTCCGCCCCCGAGGAGAATGAGGAACTGCGGCAGGACGAGCCACTTC
TGGAGAATGTGCCCATCCGCAAGAACTACCGGATCGTCTTCATTAAAGCG
CCTTCCCAGAATCTGAAATATACCGCCGCGGCCCTGAAGCGGGCCCAGTC
AAGCAACGAGGAAAAGACCGTCATCTACGTGCTCTCTAAAAAGCCCGATC
TCACTGAGATCCAGCAGCAGCTGCAGGTTACCCAGTCTGAGGCCAAGGTT
CAAAAGCCGGAGGTCTACTTCATTAAGTACAAGACCCAGGAAGAGGCCCA
GCGCGCCCAGCAGGAAATCCAGGCCCAGTACGACGCCTTGGGAGGTGCAA
CCCACATTTCGGACGAGGGAGTGGCTCCCATCGCCAGCGTTTCGAGTGGC
TCCCTTAACCTGGGCAGCTTTGTG

BO04094.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14639-PA 1065 CG14639-RA 1..858 17..874 4290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlF-RA 1235 CG14639-RA 42..899 17..874 4290 100 Plus
TwdlV-RA 1067 CG14640-RA 556..638 704..786 250 86.7 Plus
TwdlY-RA 1034 CG32570-RA 616..696 704..784 225 85.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4247143..4247977 40..874 4175 100 Plus
3R 32079331 3R 4255322..4255404 704..786 250 86.7 Plus
X 23542271 X 16735562..16735642 704..784 225 85.2 Plus
Blast to na_te.dros performed 2015-02-11 15:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 9163..9225 333..393 130 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2393 349..394 113 71.7 Plus

BO04094.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:23 Download gff for BO04094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14639-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:25 Download gff for BO04094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14639-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:07 Download gff for BO04094.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 35..899 10..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:26 Download gff for BO04094.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 35..899 10..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:26 Download gff for BO04094.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4247144..4247977 41..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:07 Download gff for BO04094.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 72866..73699 41..874 100   Plus

BO04094.complete Sequence

1096 bp (1096 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629639

> BO04094.complete
GAAGTTATCAGTCGACATGAAGCAGTTCGTTGTTCTAATGTGCCTGGTGG
CCCTCACAGCAACAGCTCCTCAGGGATACAAGTACCAACCTCAGCTGCCA
GCCCTTCCCATTGGCAATCTTCGTCCTCTGACACCCATTTCGTCAAGTGG
AATATACGCAAGTGGCGCCGTCCCATCTTTCCCACAGGCCGGTGCTCAGC
CCGCGATCGGTGTCCAGCCAGCCATTCAAGCCGTGCAGACCATCGTTGCC
GCTCCTGCTCCCGCCCCCGCTCCCGCTCCTTTGTCGATCTCACTCCCAAA
GGAGACTTTCCTTACTGCTTCGCCCCAGCAAAACCTGATCAGCACTGTGC
AGCAGCAGCCTCAGCAAATCGTGTACCAGCAGCAACCGCAGCAAGCCCTT
CAGACCCAGTTCGTCCAGCGCCCCGCTATCGTTACCAAGGACATTTACAT
CCACTCCGCCCCCGAGGAGAATGAGGAACTGCGGCAGGACGAGCCACTTC
TGGAGAATGTGCCCATCCGCAAGAACTACCGGATCGTCTTCATTAAAGCG
CCTTCCCAGAATCTGAAATATACCGCCGCGGCCCTGAAGCGGGCCCAGTC
AAGCAACGAGGAAAAGACCGTCATCTACGTGCTCTCTAAAAAGCCCGATC
TCACTGAGATCCAGCAGCAGCTGCAGGTTACCCAGTCTGAGGCCAAGGTT
CAAAAGCCGGAGGTCTACTTCATTAAGTACAAGACCCAGGAAGAGGCCCA
GCGCGCCCAGCAGGAAATCCAGGCCCAGTACGACGCCTTGGGAGGTGCAA
CCCACATTTCGGACGAGGGAGTGGCTCCCATCGCCAGCGTTTCGAGTGGC
TCCCTTAACCTGGGCAGCTTTGTGCCCCAGCACTCCCAAGCTGGCCAAAC
CATCATCCACTCTCAGGCGCCAACCATTATCCAGCCACAGGGTCAGCCCA
TTGTTCAGCTGCAGTCTATTAACCAGGGGGTCCAGGGGGTCCAGCAGCAG
AGCTCCTTTGTGCAGAAGTCCACCTCCTCATTCGCTCCCTCGGCGCCATC
AAGGAAGTATGTGCCGGCAAAGACTTTTGCAAGCTTTCTAGACCAT

BO04094.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlF-RA 1065 CG14639-PA 1..1062 17..1078 5310 100 Plus
TwdlV-RA 756 CG14640-PA 484..566 704..786 250 86.7 Plus
TwdlY-RA 744 CG32570-PA 490..570 704..784 225 85.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlF-RA 1235 CG14639-RA 42..1103 17..1078 5310 100 Plus
TwdlV-RA 1067 CG14640-RA 556..638 704..786 250 86.7 Plus
TwdlY-RA 1034 CG32570-RA 616..696 704..784 225 85.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4247143..4248181 40..1078 5195 100 Plus
3R 32079331 3R 4255322..4255404 704..786 250 86.7 Plus
X 23542271 X 16735562..16735642 704..784 225 85.2 Plus
Blast to na_te.dros performed 2014-11-27 16:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 9163..9225 333..393 130 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2393 349..394 113 71.7 Plus

BO04094.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:48 Download gff for BO04094.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 1..1065 17..1082 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:04 Download gff for BO04094.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 33..1104 10..1082 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:53 Download gff for BO04094.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 42..1103 17..1080 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:48 Download gff for BO04094.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 33..1104 10..1082 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:12 Download gff for BO04094.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 42..1103 17..1080 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:12 Download gff for BO04094.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4247061..4247084 17..40 100 -> Plus
3R 4247144..4248181 41..1080 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:53 Download gff for BO04094.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 72783..72806 17..40 100 -> Plus
arm_3R 72866..73903 41..1080 99   Plus

BO04094.pep Sequence

Translation from 16 to 1096

> BO04094.pep
MKQFVVLMCLVALTATAPQGYKYQPQLPALPIGNLRPLTPISSSGIYASG
AVPSFPQAGAQPAIGVQPAIQAVQTIVAAPAPAPAPAPLSISLPKETFLT
ASPQQNLISTVQQQPQQIVYQQQPQQALQTQFVQRPAIVTKDIYIHSAPE
ENEELRQDEPLLENVPIRKNYRIVFIKAPSQNLKYTAAALKRAQSSNEEK
TVIYVLSKKPDLTEIQQQLQVTQSEAKVQKPEVYFIKYKTQEEAQRAQQE
IQAQYDALGGATHISDEGVAPIASVSSGSLNLGSFVPQHSQAGQTIIHSQ
APTIIQPQGQPIVQLQSINQGVQGVQQQSSFVQKSTSSFAPSAPSRKYVP
AKTFASFLDH

BO04094.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlF-PA 354 CG14639-PA 1..354 1..354 1770 100 Plus
TwdlG-PC 278 CG14643-PC 3..246 4..275 424 41.2 Plus
TwdlG-PB 278 CG14643-PB 3..246 4..275 424 41.2 Plus
TwdlG-PA 278 CG14643-PA 3..246 4..275 424 41.2 Plus
TwdlV-PA 251 CG14640-PA 1..233 1..296 374 37.7 Plus