Clone Sequence Records
BO04095.3prime Sequence
620 bp (619 high quality bases) assembled on 2005-12-01
> BO04095.3prime
ATGGTCTAGAAAGCTTGCGCAACAATGGCCATCGTGACCGCTGTGGTTGT
GCGAGTGGCCATGTCCGCCGGATCTGTGGACCGCCTTCTCCTCCTCCTCG
CCTGACTGCTTCGCAGCCTTGGCCTGATCCTCATCGGCAAACTCGCTGAG
GTCGCGTCGCATGGCATATGCATCCTCGCCATCGGCATAGTACTTGGGCT
CCACCTCGATGATCTTGAACTTGAGGGCGTTGGTGTAGAGGTTCAGGGCA
GCCCGATTGCTCTTCCTCACGTGCAGGGACACGTACTGGGCATTGAAGCA
CTCGACCATGGCCTGGGAGGCCTGATTCATGAGCTTCTGGGCCAGGCCCA
ATCGCCGATAGGAACGCTTGACCGCTAGCGAGGTGATGTGCCCATGGCGG
CTCTCCTCATTGGGCTCCGGCTCCTCCATCTTGGCCAGGACATAGCCCAC
AATGGCGCCCTTGTCGTCAACGGCCACGTAGCTAAGCTGAGGCCAGGTTA
GTCCGTGGTAAAAGTAGTACTTCATCTGGTAGTTTTCGGGTAGACACAGC
AGATTGCAGTGCTGCATGGTCATTAGGTCTTCCGGTTTTGCGCAGCGGAT
GTTCATGTCGACTGATAACT
BO04095.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11989-PA | 591 | Ard1-RA | 1..588 | 606..19 | 2940 | 100 | Minus |
CG11989-PB | 591 | Ard1-RB | 1..588 | 606..19 | 2940 | 100 | Minus |
CG11989-PC | 591 | Ard1-RC | 1..588 | 606..19 | 2940 | 100 | Minus |
CG11989-PE | 591 | Ard1-RE | 1..588 | 606..19 | 2940 | 100 | Minus |
CG11989-PD | 591 | Ard1-RD | 1..588 | 606..19 | 2940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vnc-RB | 1016 | CG11989-RB | 268..856 | 607..19 | 2945 | 100 | Minus |
vnc-RC | 1137 | CG11989-RC | 389..977 | 607..19 | 2945 | 100 | Minus |
vnc-RD | 1176 | CG11989-RD | 428..1016 | 607..19 | 2945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9973275..9973863 | 607..19 | 2945 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 05:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2766..2827 | 116..57 | 106 | 67.7 | Minus |
BO04095.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:24 Download gff for
BO04095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ard1-PA | 1..591 | 16..606 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:26 Download gff for
BO04095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11989-PD | 1..591 | 16..606 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:52:56 Download gff for
BO04095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vnc-RD | 424..1027 | 9..615 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:07 Download gff for
BO04095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vnc-RD | 424..1027 | 9..615 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:07 Download gff for
BO04095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9973271..9973874 | 9..615 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:52:56 Download gff for
BO04095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9966371..9966974 | 9..615 | 98 | | Minus |
BO04095.5prime Sequence
620 bp (619 high quality bases) assembled on 2005-12-01
> BO04095.5prime
GAAGTTATCAGTCGACATGAACATCCGCTGCGCAAAACCGGAAGACCTAA
TGACCATGCAGCACTGCAATCTGCTGTGTCTACCCGAAAACTACCAGATG
AAGTACTACTTTTACCACGGACTAACCTGGCCTCAGCTTAGCTACGTGGC
CGTTGACGACAAGGGCGCCATTGTGGGCTATGTCCTGGCCAAGATGGAGG
AGCCGGAGCCCAATGAGGAGAGCCGCCATGGGCACATCACCTCGCTAGCG
GTCAAGCGTTCCTATCGGCGATTGGGCCTGGCCCAGAAGCTCATGAATCA
GGCCTCCCAGGCCATGGTCGAGTGCTTCAATGCCCAGTACGTGTCCCTGC
ACGTGAGGAAGAGCAATCGGGCTGCCCTGAACCTCTACACCAACGCCCTC
AAGTTCAAGATCATCGAGGTGGAGCCCAAGTACTATGCCGATGGCGAGGA
TGCATATGCCATGCGACGCGACCTCAGCGAGTTTGCCGATGAGGATCAGG
CCAAGGCTGCGAAGCAGTCAGGCGAGGAGGAGGAGAAGGCGGTCCACAGA
TCCGGCGGACATGGCCACTCGCACAACCACAGCGGTCACGATGGCCATTG
TTGCGCAAGCTTTCTAGACC
BO04095.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11989-PA | 591 | Ard1-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
CG11989-PB | 591 | Ard1-RB | 1..588 | 17..604 | 2940 | 100 | Plus |
CG11989-PC | 591 | Ard1-RC | 1..588 | 17..604 | 2940 | 100 | Plus |
CG11989-PE | 591 | Ard1-RE | 1..588 | 17..604 | 2940 | 100 | Plus |
CG11989-PD | 591 | Ard1-RD | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vnc-RB | 1016 | CG11989-RB | 268..856 | 16..604 | 2945 | 100 | Plus |
vnc-RC | 1137 | CG11989-RC | 389..977 | 16..604 | 2945 | 100 | Plus |
vnc-RD | 1176 | CG11989-RD | 428..1016 | 16..604 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:14:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9973275..9973863 | 16..604 | 2945 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 06:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2766..2827 | 507..566 | 106 | 67.7 | Plus |
BO04095.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:25 Download gff for
BO04095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ard1-PA | 1..591 | 17..607 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:28 Download gff for
BO04095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11989-PD | 1..591 | 17..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:17 Download gff for
BO04095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vnc-RD | 424..1027 | 8..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:04 Download gff for
BO04095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vnc-RD | 424..1027 | 8..614 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:04 Download gff for
BO04095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9973271..9973874 | 8..614 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:17 Download gff for
BO04095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9966371..9966974 | 8..614 | 98 | | Plus |
BO04095.complete Sequence
622 bp (622 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629640
> BO04095.complete
GAAGTTATCAGTCGACATGAACATCCGCTGCGCAAAACCGGAAGACCTAA
TGACCATGCAGCACTGCAATCTGCTGTGTCTACCCGAAAACTACCAGATG
AAGTACTACTTTTACCACGGACTAACCTGGCCTCAGCTTAGCTACGTGGC
CGTTGACGACAAGGGCGCCATTGTGGGCTATGTCCTGGCCAAGATGGAGG
AGCCGGAGCCCAATGAGGAGAGCCGCCATGGGCACATCACCTCGCTAGCG
GTCAAGCGTTCCTATCGGCGATTGGGCCTGGCCCAGAAGCTCATGAATCA
GGCCTCCCAGGCCATGGTCGAGTGCTTCAATGCCCAGTACGTGTCCCTGC
ACGTGAGGAAGAGCAATCGGGCTGCCCTGAACCTCTACACCAACGCCCTC
AAGTTCAAGATCATCGAGGTGGAGCCCAAGTACTATGCCGATGGCGAGGA
TGCATATGCCATGCGACGCGACCTCAGCGAGTTTGCCGATGAGGATCAGG
CCAAGGCTGCGAAGCAGTCAGGCGAGGAGGAGGAGAAGGCGGTCCACAGA
TCCGGCGGACATGGCCACTCGCACAACCACAGCGGTCACGATGGCCATTG
TTGCGCAAGCTTTCTAGACCAT
BO04095.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vnc-RB | 591 | CG11989-PB | 1..588 | 17..604 | 2940 | 100 | Plus |
vnc-RC | 591 | CG11989-PC | 1..588 | 17..604 | 2940 | 100 | Plus |
vnc-RD | 591 | CG11989-PD | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vnc-RB | 1016 | CG11989-RB | 268..856 | 16..604 | 2945 | 100 | Plus |
vnc-RC | 1137 | CG11989-RC | 389..977 | 16..604 | 2945 | 100 | Plus |
vnc-RD | 1176 | CG11989-RD | 428..1016 | 16..604 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9973275..9973863 | 16..604 | 2945 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2766..2827 | 507..566 | 106 | 67.7 | Plus |
BO04095.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:30 Download gff for
BO04095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ard1-RC | 1..591 | 17..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:54 Download gff for
BO04095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ard1-RC | 454..1057 | 8..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:39 Download gff for
BO04095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vnc-RD | 429..1016 | 17..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:30 Download gff for
BO04095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ard1-RC | 454..1057 | 8..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:02 Download gff for
BO04095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vnc-RD | 429..1016 | 17..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:02 Download gff for
BO04095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9973276..9973863 | 17..606 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:39 Download gff for
BO04095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9966376..9966963 | 17..606 | 99 | | Plus |
BO04095.pep Sequence
Translation from 16 to 622
> BO04095.pep
MNIRCAKPEDLMTMQHCNLLCLPENYQMKYYFYHGLTWPQLSYVAVDDKG
AIVGYVLAKMEEPEPNEESRHGHITSLAVKRSYRRLGLAQKLMNQASQAM
VECFNAQYVSLHVRKSNRAALNLYTNALKFKIIEVEPKYYADGEDAYAMR
RDLSEFADEDQAKAAKQSGEEEEKAVHRSGGHGHSHNHSGHDGHCCASFL
DH
BO04095.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vnc-PB | 196 | CG11989-PB | 1..196 | 1..196 | 1054 | 100 | Plus |
vnc-PC | 196 | CG11989-PC | 1..196 | 1..196 | 1054 | 100 | Plus |
vnc-PD | 196 | CG11989-PD | 1..196 | 1..196 | 1054 | 100 | Plus |
vnc-PE | 196 | CG11989-PE | 1..196 | 1..196 | 1054 | 100 | Plus |
vnc-PA | 196 | CG11989-PA | 1..196 | 1..196 | 1054 | 100 | Plus |