Clone BO04095 Report

Search the DGRC for BO04095

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptArd1-RA
Protein status:BO04095.pep: validated full length
Sequenced Size:622

Clone Sequence Records

BO04095.3prime Sequence

620 bp (619 high quality bases) assembled on 2005-12-01

> BO04095.3prime
ATGGTCTAGAAAGCTTGCGCAACAATGGCCATCGTGACCGCTGTGGTTGT
GCGAGTGGCCATGTCCGCCGGATCTGTGGACCGCCTTCTCCTCCTCCTCG
CCTGACTGCTTCGCAGCCTTGGCCTGATCCTCATCGGCAAACTCGCTGAG
GTCGCGTCGCATGGCATATGCATCCTCGCCATCGGCATAGTACTTGGGCT
CCACCTCGATGATCTTGAACTTGAGGGCGTTGGTGTAGAGGTTCAGGGCA
GCCCGATTGCTCTTCCTCACGTGCAGGGACACGTACTGGGCATTGAAGCA
CTCGACCATGGCCTGGGAGGCCTGATTCATGAGCTTCTGGGCCAGGCCCA
ATCGCCGATAGGAACGCTTGACCGCTAGCGAGGTGATGTGCCCATGGCGG
CTCTCCTCATTGGGCTCCGGCTCCTCCATCTTGGCCAGGACATAGCCCAC
AATGGCGCCCTTGTCGTCAACGGCCACGTAGCTAAGCTGAGGCCAGGTTA
GTCCGTGGTAAAAGTAGTACTTCATCTGGTAGTTTTCGGGTAGACACAGC
AGATTGCAGTGCTGCATGGTCATTAGGTCTTCCGGTTTTGCGCAGCGGAT
GTTCATGTCGACTGATAACT

BO04095.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11989-PA 591 Ard1-RA 1..588 606..19 2940 100 Minus
CG11989-PB 591 Ard1-RB 1..588 606..19 2940 100 Minus
CG11989-PC 591 Ard1-RC 1..588 606..19 2940 100 Minus
CG11989-PE 591 Ard1-RE 1..588 606..19 2940 100 Minus
CG11989-PD 591 Ard1-RD 1..588 606..19 2940 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
vnc-RB 1016 CG11989-RB 268..856 607..19 2945 100 Minus
vnc-RC 1137 CG11989-RC 389..977 607..19 2945 100 Minus
vnc-RD 1176 CG11989-RD 428..1016 607..19 2945 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9973275..9973863 607..19 2945 100 Minus
Blast to na_te.dros performed 2015-02-13 05:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRIM 3111 Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). 2766..2827 116..57 106 67.7 Minus

BO04095.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:24 Download gff for BO04095.3prime
Subject Subject Range Query Range Percent Splice Strand
Ard1-PA 1..591 16..606 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:26 Download gff for BO04095.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11989-PD 1..591 16..606 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:52:56 Download gff for BO04095.3prime
Subject Subject Range Query Range Percent Splice Strand
vnc-RD 424..1027 9..615 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:07 Download gff for BO04095.3prime
Subject Subject Range Query Range Percent Splice Strand
vnc-RD 424..1027 9..615 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:07 Download gff for BO04095.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9973271..9973874 9..615 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:52:56 Download gff for BO04095.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9966371..9966974 9..615 98   Minus

BO04095.5prime Sequence

620 bp (619 high quality bases) assembled on 2005-12-01

> BO04095.5prime
GAAGTTATCAGTCGACATGAACATCCGCTGCGCAAAACCGGAAGACCTAA
TGACCATGCAGCACTGCAATCTGCTGTGTCTACCCGAAAACTACCAGATG
AAGTACTACTTTTACCACGGACTAACCTGGCCTCAGCTTAGCTACGTGGC
CGTTGACGACAAGGGCGCCATTGTGGGCTATGTCCTGGCCAAGATGGAGG
AGCCGGAGCCCAATGAGGAGAGCCGCCATGGGCACATCACCTCGCTAGCG
GTCAAGCGTTCCTATCGGCGATTGGGCCTGGCCCAGAAGCTCATGAATCA
GGCCTCCCAGGCCATGGTCGAGTGCTTCAATGCCCAGTACGTGTCCCTGC
ACGTGAGGAAGAGCAATCGGGCTGCCCTGAACCTCTACACCAACGCCCTC
AAGTTCAAGATCATCGAGGTGGAGCCCAAGTACTATGCCGATGGCGAGGA
TGCATATGCCATGCGACGCGACCTCAGCGAGTTTGCCGATGAGGATCAGG
CCAAGGCTGCGAAGCAGTCAGGCGAGGAGGAGGAGAAGGCGGTCCACAGA
TCCGGCGGACATGGCCACTCGCACAACCACAGCGGTCACGATGGCCATTG
TTGCGCAAGCTTTCTAGACC

BO04095.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11989-PA 591 Ard1-RA 1..588 17..604 2940 100 Plus
CG11989-PB 591 Ard1-RB 1..588 17..604 2940 100 Plus
CG11989-PC 591 Ard1-RC 1..588 17..604 2940 100 Plus
CG11989-PE 591 Ard1-RE 1..588 17..604 2940 100 Plus
CG11989-PD 591 Ard1-RD 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
vnc-RB 1016 CG11989-RB 268..856 16..604 2945 100 Plus
vnc-RC 1137 CG11989-RC 389..977 16..604 2945 100 Plus
vnc-RD 1176 CG11989-RD 428..1016 16..604 2945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9973275..9973863 16..604 2945 100 Plus
Blast to na_te.dros performed 2015-02-12 06:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRIM 3111 Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). 2766..2827 507..566 106 67.7 Plus

BO04095.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:25 Download gff for BO04095.5prime
Subject Subject Range Query Range Percent Splice Strand
Ard1-PA 1..591 17..607 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:28 Download gff for BO04095.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11989-PD 1..591 17..607 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:17 Download gff for BO04095.5prime
Subject Subject Range Query Range Percent Splice Strand
vnc-RD 424..1027 8..614 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:04 Download gff for BO04095.5prime
Subject Subject Range Query Range Percent Splice Strand
vnc-RD 424..1027 8..614 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:04 Download gff for BO04095.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9973271..9973874 8..614 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:17 Download gff for BO04095.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9966371..9966974 8..614 98   Plus

BO04095.complete Sequence

622 bp (622 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629640

> BO04095.complete
GAAGTTATCAGTCGACATGAACATCCGCTGCGCAAAACCGGAAGACCTAA
TGACCATGCAGCACTGCAATCTGCTGTGTCTACCCGAAAACTACCAGATG
AAGTACTACTTTTACCACGGACTAACCTGGCCTCAGCTTAGCTACGTGGC
CGTTGACGACAAGGGCGCCATTGTGGGCTATGTCCTGGCCAAGATGGAGG
AGCCGGAGCCCAATGAGGAGAGCCGCCATGGGCACATCACCTCGCTAGCG
GTCAAGCGTTCCTATCGGCGATTGGGCCTGGCCCAGAAGCTCATGAATCA
GGCCTCCCAGGCCATGGTCGAGTGCTTCAATGCCCAGTACGTGTCCCTGC
ACGTGAGGAAGAGCAATCGGGCTGCCCTGAACCTCTACACCAACGCCCTC
AAGTTCAAGATCATCGAGGTGGAGCCCAAGTACTATGCCGATGGCGAGGA
TGCATATGCCATGCGACGCGACCTCAGCGAGTTTGCCGATGAGGATCAGG
CCAAGGCTGCGAAGCAGTCAGGCGAGGAGGAGGAGAAGGCGGTCCACAGA
TCCGGCGGACATGGCCACTCGCACAACCACAGCGGTCACGATGGCCATTG
TTGCGCAAGCTTTCTAGACCAT

BO04095.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
vnc-RB 591 CG11989-PB 1..588 17..604 2940 100 Plus
vnc-RC 591 CG11989-PC 1..588 17..604 2940 100 Plus
vnc-RD 591 CG11989-PD 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
vnc-RB 1016 CG11989-RB 268..856 16..604 2945 100 Plus
vnc-RC 1137 CG11989-RC 389..977 16..604 2945 100 Plus
vnc-RD 1176 CG11989-RD 428..1016 16..604 2945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9973275..9973863 16..604 2945 100 Plus
Blast to na_te.dros performed 2014-11-27 20:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRIM 3111 Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). 2766..2827 507..566 106 67.7 Plus

BO04095.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:30 Download gff for BO04095.complete
Subject Subject Range Query Range Percent Splice Strand
Ard1-RC 1..591 17..607 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:54 Download gff for BO04095.complete
Subject Subject Range Query Range Percent Splice Strand
Ard1-RC 454..1057 8..614 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:39 Download gff for BO04095.complete
Subject Subject Range Query Range Percent Splice Strand
vnc-RD 429..1016 17..606 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:30 Download gff for BO04095.complete
Subject Subject Range Query Range Percent Splice Strand
Ard1-RC 454..1057 8..614 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:02 Download gff for BO04095.complete
Subject Subject Range Query Range Percent Splice Strand
vnc-RD 429..1016 17..606 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:02 Download gff for BO04095.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9973276..9973863 17..606 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:39 Download gff for BO04095.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9966376..9966963 17..606 99   Plus

BO04095.pep Sequence

Translation from 16 to 622

> BO04095.pep
MNIRCAKPEDLMTMQHCNLLCLPENYQMKYYFYHGLTWPQLSYVAVDDKG
AIVGYVLAKMEEPEPNEESRHGHITSLAVKRSYRRLGLAQKLMNQASQAM
VECFNAQYVSLHVRKSNRAALNLYTNALKFKIIEVEPKYYADGEDAYAMR
RDLSEFADEDQAKAAKQSGEEEEKAVHRSGGHGHSHNHSGHDGHCCASFL
DH

BO04095.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
vnc-PB 196 CG11989-PB 1..196 1..196 1054 100 Plus
vnc-PC 196 CG11989-PC 1..196 1..196 1054 100 Plus
vnc-PD 196 CG11989-PD 1..196 1..196 1054 100 Plus
vnc-PE 196 CG11989-PE 1..196 1..196 1054 100 Plus
vnc-PA 196 CG11989-PA 1..196 1..196 1054 100 Plus