Clone Sequence Records
BO04102.3prime Sequence
927 bp (751 high quality bases) assembled on 2005-12-01
> BO04102.3prime
ATGGTCTAGAAAGCTTGCGTAGTACTTCCAGGAGTCGGCCGACTCCTGAT
TCTGCTTCTGCTTGCTCTTGCGCTCAATCAAACCTGCCAAATGCTCCGAC
CGCATGGACAGCGAGTCGATCTTCTCCACCAGCTGCTGATAGGGACTCAA
GGGCTGGGTGCCCATCACCACATGACCCAGTTTCGAATCGATCTTGGCAT
TCAGACGGGCATTGCGGATAAGGTTGACGATCCAGCACTCAGCCTCGTTG
GGCTTCATGTTCAGCTTATCGGCCAGCATGCTGATGGTGATGCACTGGTG
GATGCGGCAGAATGTCTCGAAGATCATCAAGCGGGCATCCTCCACGAACT
CATTCAGGCAGGCCACGATGAAGAAGTCGTTGAGGATCACCGTCTGGCAC
TCGTGCAGCTTCAGACGCGCTCCCTCGAAATCAAAGTTCACGTACAGACA
CTCCAGAAACTCGGTGATGGGATCGCGGTACGTGTACGACTCCTGTTGGA
TCACCTTGATCAAATCCTTTAGAGCATTGCGGCGGGTGCGGTTGATGACT
ACGGCGGTGGCCAAGTAACGCATGATGTGCGGACACATTGTCTGAATGGC
GTTCAAATACAGGGGCTTGTACAGGAACATCTCAATAATGAGATCGCGTC
CCTTGGGGTGATTGAAGAAGACCAGGACCGACCAGTGGATCAGCCAGGTG
CGTTGCTGCAGGGCCTGGATGGTGCTGAAGTTGGCGTTGTCAATGTAGTC
GCGCAAACGCGTCAGATCCTCCAGAGCAGTGTTCCAGTTGAGGGTCAGAA
TCTCGGCGGCCAGCTTGCCCCACAGCACATTAAGGTAGTTCTTGTCGTTG
GGCGACATGACGATGAGGCAGAAGTACAGGTAAGAGGTGGACTCCTGATA
GTTGCCGCACTCGTAGAGGTACTTGGC
BO04102.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9677-PA | 1308 | Int6-RA | 397..1305 | 927..19 | 4545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:07:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Int6-RA | 1520 | CG9677-RA | 505..1413 | 927..19 | 4545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:07:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16785349..16786172 | 19..842 | 4120 | 100 | Plus |
3L | 28110227 | 3L | 16786257..16786343 | 841..927 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:07:04 has no hits.
BO04102.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:29 Download gff for
BO04102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-PA | 397..1308 | 18..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:32 Download gff for
BO04102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9677-PA | 397..1308 | 18..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:14 Download gff for
BO04102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 505..1418 | 11..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:30:47 Download gff for
BO04102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 505..1418 | 11..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:30:47 Download gff for
BO04102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16785344..16786170 | 11..840 | 99 | <- | Plus |
3L | 16786257..16786343 | 841..927 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:14 Download gff for
BO04102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16778444..16779270 | 11..840 | 99 | <- | Plus |
arm_3L | 16779357..16779443 | 841..927 | 100 | | Plus |
BO04102.5prime Sequence
945 bp (745 high quality bases) assembled on 2005-12-01
> BO04102.5prime
GAAGTTATCAGTCGACATGGCCAATTTCGATCTGACACGCATCAATTGCC
AGTTTTTGGACAGGCATTTGACCTTCCCGCTGCTGGAGTTCTTGTGCGGC
AAGGAGATCTACAACCAGCAGGAGCTGCTGGAGTACATTTTGGAGACGGT
GAACAAGACGAACATGATCGATTACACGATGGACACCCGCAAGCGTCTCA
ATCTCAGCCAGGAGATGCCCGAGGAGCTCGTGCAGCGCAAGGCGGAGGTC
CTGGCCACGCTTAAGCAGCTGCAGAACGAGGTGGCACCCATCATGAAGGC
CACCGACATTCTTAAGAACGGTGAGAGCATGAAGGACTCGAAGACCTTCG
TCAACGCCCTTCAGAAGGACTACAATTTTAAGGTGGAGCACCTGGAGAGC
GCCTACAAGCTGGCCAAGTACCTCTACGAGTGCGGCAACTATCAGGAGTC
CACCTCTTACCTGTACTTCTGCCTCATCGTCATGTCGCCCAACGACAAGA
ACTACCTTAATGTGCTGTGGGGCAAGCTGGCCGCCGAGATTCTGACCCTC
AACTGGAACACTGCTCTGGAGGATCTGACGCGTTTGCGCGACTACATTGA
CAACGCCAACTTCAGCACCATCCAGGCCCTGCAGCAACGCACCTGGCTGA
TCCACTGGTCGGTCCTGGTCTTCTTCAATCACCCCAAGGGACGCGATCTC
ATTATTGAGATGTTCCTGTACAAGCCCCTGTATTTGAACGCCATTCAGAC
AATGTGTCCGCACATCATGCGTTACTTGGCCACCGCCGTAGTCATCAACC
GCACCCGCCGCAATGCTCTAAAGGATTTGATCAAGGTGATCCAACAGGAG
TCGTACACGTACCGCGATCCCATCACCGAGTTTCTGGAGTGTCTGTACGT
GAACTTTGATTTCGAGGGAGCGCGTCTGAAGCTGCACGAATGCCC
BO04102.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9677-PA | 1308 | Int6-RA | 1..923 | 17..939 | 4615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Int6-RA | 1520 | CG9677-RA | 108..1036 | 16..944 | 4630 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16785726..16786172 | 944..498 | 2220 | 99.8 | Minus |
3L | 28110227 | 3L | 16786257..16786651 | 499..105 | 1975 | 100 | Minus |
3L | 28110227 | 3L | 16786744..16786834 | 106..16 | 455 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 15:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dnet\R1B | 2038 | Dnet\R1B NETR1B 2038bp | 7..48 | 220..179 | 111 | 73.8 | Minus |
BO04102.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:30 Download gff for
BO04102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-PA | 1..928 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:33 Download gff for
BO04102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9677-PA | 1..928 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:41 Download gff for
BO04102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 108..1036 | 16..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:55 Download gff for
BO04102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 108..1036 | 16..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:55 Download gff for
BO04102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16786744..16786834 | 16..106 | 100 | | Minus |
3L | 16785725..16786170 | 500..945 | 99 | <- | Minus |
3L | 16786257..16786649 | 107..499 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:41 Download gff for
BO04102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16778825..16779270 | 500..945 | 99 | <- | Minus |
arm_3L | 16779357..16779749 | 107..499 | 100 | <- | Minus |
arm_3L | 16779844..16779934 | 16..106 | 100 | | Minus |
BO04102.complete Sequence
1339 bp (1339 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629641
> BO04102.complete
GAAGTTATCAGTCGACATGGCCAATTTCGATCTGACACGCATCAATTGCC
AGTTTTTGGACAGGCATTTGACCTTCCCGCTGCTGGAGTTCTTGTGCGGC
AAGGAGATCTACAACCAGCAGGAGCTGCTGGAGTACATTTTGGAGACGGT
GAACAAGACGAACATGATCGATTACACGATGGACACCCGCAAGCGTCTCA
ATCTCAGCCAGGAGATGCCCGAGGAGCTCGTGCAGCGCAAGGCGGAGGTC
CTGGCCACGCTTAAGCAGCTGCAGAACGAGGTGGCACCCATCATGAAGGC
CACCGACATTCTTAAGAACGGTGAGAGCATGAAGGACTCGAAGACCTTCG
TCAACGCCCTTCAGAAGGACTACAATTTTAAGGTGGAGCACCTGGAGAGC
GCCTACAAGCTGGCCAAGTACCTCTACGAGTGCGGCAACTATCAGGAGTC
CACCTCTTACCTGTACTTCTGCCTCATCGTCATGTCGCCCAACGACAAGA
ACTACCTTAATGTGCTGTGGGGCAAGCTGGCCGCCGAGATTCTGACCCTC
AACTGGAACACTGCTCTGGAGGATCTGACGCGTTTGCGCGACTACATTGA
CAACGCCAACTTCAGCACCATCCAGGCCCTGCAGCAACGCACCTGGCTGA
TCCACTGGTCGGTCCTGGTCTTCTTCAATCACCCCAAGGGACGCGATCTC
ATTATTGAGATGTTCCTGTACAAGCCCCTGTATTTGAACGCCATTCAGAC
AATGTGTCCGCACATCATGCGTTACTTGGCCACCGCCGTAGTCATCAACC
GCACCCGCCGCAATGCTCTAAAGGATTTGATCAAGGTGATCCAACAGGAG
TCGTACACGTACCGCGATCCCATCACCGAGTTTCTGGAGTGTCTGTACGT
GAACTTTGATTTCGAGGGAGCGCGTCTGAAGCTGCACGAGTGCCAGACGG
TGATCCTCAACGACTTCTTCATCGTGGCCTGCCTGAATGAGTTCGTGGAG
GATGCCCGCTTGATGATCTTCGAGACATTCTGCCGCATCCACCAGTGCAT
CACCATCAGCATGCTGGCCGATAAGCTGAACATGAAGCCCAACGAGGCTG
AGTGCTGGATCGTCAACCTTATCCGCAATGCCCGTCTGAATGCCAAGATC
GATTCGAAACTGGGTCATGTGGTGATGGGCACCCAGCCCTTGAGTCCCTA
TCAGCAGCTGGTGGAGAAGATCGACTCGCTGTCCATGCGGTCGGAGCATT
TGGCAGGTTTGATTGAGCGCAAGAGCAAGCAGAAGCAGAATCAGGAGTCG
GCCGACTCCTGGAAGTACTACGCAAGCTTTCTAGACCAT
BO04102.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:23:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Int6-RA | 1308 | CG9677-PA | 1..1305 | 17..1321 | 6525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:23:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Int6-RA | 1520 | CG9677-RA | 108..1413 | 16..1321 | 6530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:23:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16785349..16786172 | 1321..498 | 4120 | 100 | Minus |
3L | 28110227 | 3L | 16786257..16786651 | 499..105 | 1975 | 100 | Minus |
3L | 28110227 | 3L | 16786744..16786834 | 106..16 | 455 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 15:23:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dnet\R1B | 2038 | Dnet\R1B NETR1B 2038bp | 7..48 | 220..179 | 111 | 73.8 | Minus |
BO04102.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:35 Download gff for
BO04102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 1..1308 | 17..1322 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:32 Download gff for
BO04102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 156..1466 | 16..1329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:10 Download gff for
BO04102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 109..1413 | 17..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:35 Download gff for
BO04102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 156..1466 | 16..1329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:31 Download gff for
BO04102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Int6-RA | 109..1413 | 17..1323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:31 Download gff for
BO04102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16785347..16786170 | 500..1323 | 99 | <- | Minus |
3L | 16786257..16786649 | 107..499 | 100 | <- | Minus |
3L | 16786744..16786833 | 17..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:10 Download gff for
BO04102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16778447..16779270 | 500..1323 | 99 | <- | Minus |
arm_3L | 16779357..16779749 | 107..499 | 100 | <- | Minus |
arm_3L | 16779844..16779933 | 17..106 | 100 | | Minus |
BO04102.pep Sequence
Translation from 16 to 1339
> BO04102.pep
MANFDLTRINCQFLDRHLTFPLLEFLCGKEIYNQQELLEYILETVNKTNM
IDYTMDTRKRLNLSQEMPEELVQRKAEVLATLKQLQNEVAPIMKATDILK
NGESMKDSKTFVNALQKDYNFKVEHLESAYKLAKYLYECGNYQESTSYLY
FCLIVMSPNDKNYLNVLWGKLAAEILTLNWNTALEDLTRLRDYIDNANFS
TIQALQQRTWLIHWSVLVFFNHPKGRDLIIEMFLYKPLYLNAIQTMCPHI
MRYLATAVVINRTRRNALKDLIKVIQQESYTYRDPITEFLECLYVNFDFE
GARLKLHECQTVILNDFFIVACLNEFVEDARLMIFETFCRIHQCITISML
ADKLNMKPNEAECWIVNLIRNARLNAKIDSKLGHVVMGTQPLSPYQQLVE
KIDSLSMRSEHLAGLIERKSKQKQNQESADSWKYYASFLDH
BO04102.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Int6-PA | 435 | CG9677-PA | 1..435 | 1..435 | 2273 | 100 | Plus |