Clone BO04102 Report

Search the DGRC for BO04102

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:41
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptInt6-RA
Protein status:BO04102.pep: validated full length
Sequenced Size:1339

Clone Sequence Records

BO04102.3prime Sequence

927 bp (751 high quality bases) assembled on 2005-12-01

> BO04102.3prime
ATGGTCTAGAAAGCTTGCGTAGTACTTCCAGGAGTCGGCCGACTCCTGAT
TCTGCTTCTGCTTGCTCTTGCGCTCAATCAAACCTGCCAAATGCTCCGAC
CGCATGGACAGCGAGTCGATCTTCTCCACCAGCTGCTGATAGGGACTCAA
GGGCTGGGTGCCCATCACCACATGACCCAGTTTCGAATCGATCTTGGCAT
TCAGACGGGCATTGCGGATAAGGTTGACGATCCAGCACTCAGCCTCGTTG
GGCTTCATGTTCAGCTTATCGGCCAGCATGCTGATGGTGATGCACTGGTG
GATGCGGCAGAATGTCTCGAAGATCATCAAGCGGGCATCCTCCACGAACT
CATTCAGGCAGGCCACGATGAAGAAGTCGTTGAGGATCACCGTCTGGCAC
TCGTGCAGCTTCAGACGCGCTCCCTCGAAATCAAAGTTCACGTACAGACA
CTCCAGAAACTCGGTGATGGGATCGCGGTACGTGTACGACTCCTGTTGGA
TCACCTTGATCAAATCCTTTAGAGCATTGCGGCGGGTGCGGTTGATGACT
ACGGCGGTGGCCAAGTAACGCATGATGTGCGGACACATTGTCTGAATGGC
GTTCAAATACAGGGGCTTGTACAGGAACATCTCAATAATGAGATCGCGTC
CCTTGGGGTGATTGAAGAAGACCAGGACCGACCAGTGGATCAGCCAGGTG
CGTTGCTGCAGGGCCTGGATGGTGCTGAAGTTGGCGTTGTCAATGTAGTC
GCGCAAACGCGTCAGATCCTCCAGAGCAGTGTTCCAGTTGAGGGTCAGAA
TCTCGGCGGCCAGCTTGCCCCACAGCACATTAAGGTAGTTCTTGTCGTTG
GGCGACATGACGATGAGGCAGAAGTACAGGTAAGAGGTGGACTCCTGATA
GTTGCCGCACTCGTAGAGGTACTTGGC

BO04102.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9677-PA 1308 Int6-RA 397..1305 927..19 4545 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
Int6-RA 1520 CG9677-RA 505..1413 927..19 4545 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16785349..16786172 19..842 4120 100 Plus
3L 28110227 3L 16786257..16786343 841..927 435 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:07:04 has no hits.

BO04102.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:29 Download gff for BO04102.3prime
Subject Subject Range Query Range Percent Splice Strand
Int6-PA 397..1308 18..927 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:32 Download gff for BO04102.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9677-PA 397..1308 18..927 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:14 Download gff for BO04102.3prime
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 505..1418 11..927 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:30:47 Download gff for BO04102.3prime
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 505..1418 11..927 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:30:47 Download gff for BO04102.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16785344..16786170 11..840 99 <- Plus
3L 16786257..16786343 841..927 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:14 Download gff for BO04102.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16778444..16779270 11..840 99 <- Plus
arm_3L 16779357..16779443 841..927 100   Plus

BO04102.5prime Sequence

945 bp (745 high quality bases) assembled on 2005-12-01

> BO04102.5prime
GAAGTTATCAGTCGACATGGCCAATTTCGATCTGACACGCATCAATTGCC
AGTTTTTGGACAGGCATTTGACCTTCCCGCTGCTGGAGTTCTTGTGCGGC
AAGGAGATCTACAACCAGCAGGAGCTGCTGGAGTACATTTTGGAGACGGT
GAACAAGACGAACATGATCGATTACACGATGGACACCCGCAAGCGTCTCA
ATCTCAGCCAGGAGATGCCCGAGGAGCTCGTGCAGCGCAAGGCGGAGGTC
CTGGCCACGCTTAAGCAGCTGCAGAACGAGGTGGCACCCATCATGAAGGC
CACCGACATTCTTAAGAACGGTGAGAGCATGAAGGACTCGAAGACCTTCG
TCAACGCCCTTCAGAAGGACTACAATTTTAAGGTGGAGCACCTGGAGAGC
GCCTACAAGCTGGCCAAGTACCTCTACGAGTGCGGCAACTATCAGGAGTC
CACCTCTTACCTGTACTTCTGCCTCATCGTCATGTCGCCCAACGACAAGA
ACTACCTTAATGTGCTGTGGGGCAAGCTGGCCGCCGAGATTCTGACCCTC
AACTGGAACACTGCTCTGGAGGATCTGACGCGTTTGCGCGACTACATTGA
CAACGCCAACTTCAGCACCATCCAGGCCCTGCAGCAACGCACCTGGCTGA
TCCACTGGTCGGTCCTGGTCTTCTTCAATCACCCCAAGGGACGCGATCTC
ATTATTGAGATGTTCCTGTACAAGCCCCTGTATTTGAACGCCATTCAGAC
AATGTGTCCGCACATCATGCGTTACTTGGCCACCGCCGTAGTCATCAACC
GCACCCGCCGCAATGCTCTAAAGGATTTGATCAAGGTGATCCAACAGGAG
TCGTACACGTACCGCGATCCCATCACCGAGTTTCTGGAGTGTCTGTACGT
GAACTTTGATTTCGAGGGAGCGCGTCTGAAGCTGCACGAATGCCC

BO04102.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9677-PA 1308 Int6-RA 1..923 17..939 4615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
Int6-RA 1520 CG9677-RA 108..1036 16..944 4630 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16785726..16786172 944..498 2220 99.8 Minus
3L 28110227 3L 16786257..16786651 499..105 1975 100 Minus
3L 28110227 3L 16786744..16786834 106..16 455 100 Minus
Blast to na_te.dros performed 2015-02-12 15:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1B 2038 Dnet\R1B NETR1B 2038bp 7..48 220..179 111 73.8 Minus

BO04102.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:30 Download gff for BO04102.5prime
Subject Subject Range Query Range Percent Splice Strand
Int6-PA 1..928 17..945 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:33 Download gff for BO04102.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9677-PA 1..928 17..945 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:41 Download gff for BO04102.5prime
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 108..1036 16..945 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:55 Download gff for BO04102.5prime
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 108..1036 16..945 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:55 Download gff for BO04102.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16786744..16786834 16..106 100   Minus
3L 16785725..16786170 500..945 99 <- Minus
3L 16786257..16786649 107..499 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:41 Download gff for BO04102.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16778825..16779270 500..945 99 <- Minus
arm_3L 16779357..16779749 107..499 100 <- Minus
arm_3L 16779844..16779934 16..106 100   Minus

BO04102.complete Sequence

1339 bp (1339 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629641

> BO04102.complete
GAAGTTATCAGTCGACATGGCCAATTTCGATCTGACACGCATCAATTGCC
AGTTTTTGGACAGGCATTTGACCTTCCCGCTGCTGGAGTTCTTGTGCGGC
AAGGAGATCTACAACCAGCAGGAGCTGCTGGAGTACATTTTGGAGACGGT
GAACAAGACGAACATGATCGATTACACGATGGACACCCGCAAGCGTCTCA
ATCTCAGCCAGGAGATGCCCGAGGAGCTCGTGCAGCGCAAGGCGGAGGTC
CTGGCCACGCTTAAGCAGCTGCAGAACGAGGTGGCACCCATCATGAAGGC
CACCGACATTCTTAAGAACGGTGAGAGCATGAAGGACTCGAAGACCTTCG
TCAACGCCCTTCAGAAGGACTACAATTTTAAGGTGGAGCACCTGGAGAGC
GCCTACAAGCTGGCCAAGTACCTCTACGAGTGCGGCAACTATCAGGAGTC
CACCTCTTACCTGTACTTCTGCCTCATCGTCATGTCGCCCAACGACAAGA
ACTACCTTAATGTGCTGTGGGGCAAGCTGGCCGCCGAGATTCTGACCCTC
AACTGGAACACTGCTCTGGAGGATCTGACGCGTTTGCGCGACTACATTGA
CAACGCCAACTTCAGCACCATCCAGGCCCTGCAGCAACGCACCTGGCTGA
TCCACTGGTCGGTCCTGGTCTTCTTCAATCACCCCAAGGGACGCGATCTC
ATTATTGAGATGTTCCTGTACAAGCCCCTGTATTTGAACGCCATTCAGAC
AATGTGTCCGCACATCATGCGTTACTTGGCCACCGCCGTAGTCATCAACC
GCACCCGCCGCAATGCTCTAAAGGATTTGATCAAGGTGATCCAACAGGAG
TCGTACACGTACCGCGATCCCATCACCGAGTTTCTGGAGTGTCTGTACGT
GAACTTTGATTTCGAGGGAGCGCGTCTGAAGCTGCACGAGTGCCAGACGG
TGATCCTCAACGACTTCTTCATCGTGGCCTGCCTGAATGAGTTCGTGGAG
GATGCCCGCTTGATGATCTTCGAGACATTCTGCCGCATCCACCAGTGCAT
CACCATCAGCATGCTGGCCGATAAGCTGAACATGAAGCCCAACGAGGCTG
AGTGCTGGATCGTCAACCTTATCCGCAATGCCCGTCTGAATGCCAAGATC
GATTCGAAACTGGGTCATGTGGTGATGGGCACCCAGCCCTTGAGTCCCTA
TCAGCAGCTGGTGGAGAAGATCGACTCGCTGTCCATGCGGTCGGAGCATT
TGGCAGGTTTGATTGAGCGCAAGAGCAAGCAGAAGCAGAATCAGGAGTCG
GCCGACTCCTGGAAGTACTACGCAAGCTTTCTAGACCAT

BO04102.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
Int6-RA 1308 CG9677-PA 1..1305 17..1321 6525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
Int6-RA 1520 CG9677-RA 108..1413 16..1321 6530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16785349..16786172 1321..498 4120 100 Minus
3L 28110227 3L 16786257..16786651 499..105 1975 100 Minus
3L 28110227 3L 16786744..16786834 106..16 455 100 Minus
Blast to na_te.dros performed 2014-11-27 15:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1B 2038 Dnet\R1B NETR1B 2038bp 7..48 220..179 111 73.8 Minus

BO04102.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:35 Download gff for BO04102.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 1..1308 17..1322 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:32 Download gff for BO04102.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 156..1466 16..1329 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:10 Download gff for BO04102.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 109..1413 17..1323 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:35 Download gff for BO04102.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 156..1466 16..1329 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:31 Download gff for BO04102.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 109..1413 17..1323 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:31 Download gff for BO04102.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16785347..16786170 500..1323 99 <- Minus
3L 16786257..16786649 107..499 100 <- Minus
3L 16786744..16786833 17..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:10 Download gff for BO04102.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16778447..16779270 500..1323 99 <- Minus
arm_3L 16779357..16779749 107..499 100 <- Minus
arm_3L 16779844..16779933 17..106 100   Minus

BO04102.pep Sequence

Translation from 16 to 1339

> BO04102.pep
MANFDLTRINCQFLDRHLTFPLLEFLCGKEIYNQQELLEYILETVNKTNM
IDYTMDTRKRLNLSQEMPEELVQRKAEVLATLKQLQNEVAPIMKATDILK
NGESMKDSKTFVNALQKDYNFKVEHLESAYKLAKYLYECGNYQESTSYLY
FCLIVMSPNDKNYLNVLWGKLAAEILTLNWNTALEDLTRLRDYIDNANFS
TIQALQQRTWLIHWSVLVFFNHPKGRDLIIEMFLYKPLYLNAIQTMCPHI
MRYLATAVVINRTRRNALKDLIKVIQQESYTYRDPITEFLECLYVNFDFE
GARLKLHECQTVILNDFFIVACLNEFVEDARLMIFETFCRIHQCITISML
ADKLNMKPNEAECWIVNLIRNARLNAKIDSKLGHVVMGTQPLSPYQQLVE
KIDSLSMRSEHLAGLIERKSKQKQNQESADSWKYYASFLDH

BO04102.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
Int6-PA 435 CG9677-PA 1..435 1..435 2273 100 Plus