Clone Sequence Records
BO04104.3prime Sequence
915 bp (822 high quality bases) assembled on 2005-12-01
> BO04104.3prime
ATGGTCTAGAAAGCTTGCACTGTAAAGATCATCGTCGCCGTTGTCGCCGG
GCGAGTTAACTGGCAAGTTGTTACCAGATCCTGAGGTGTTGCCGGTTTGA
CCGGGGAATCTGAAGTTCTGTCCGAATCCACGGGACTGCTGCAAAGTCTG
GGCAAACATCTCGTACTTCCTGATGTCATTATCGGACACCGAACGGCGAG
CGAACTTCATGGCCTCCTCGAAGTGGGCGCTGGTAATCTCCGGCACTGGA
TCGTCCTCGTCCATGTCCATCGCGGAGTTCTGATTTTCGGCGCGCTCCTT
CTCGCGACGAATTTCAGCCTCGATGGCCTGTCGGATGGCCAGCTTGCAAG
CCCGCTGGCAGATCTCGGTCAGATCGGCGCCAGAGAAGCCCTGCGTCACC
TTGGCGATGTAGGTAAGGTCTACTTCCTTGGCCAGCGGCGACTTGCGCAA
GTTAGCCTTCAGGATAGCCTCACGCGATTTGTCGTCGGGCAGCGGAATAT
AGATCAACTGATCCAGACGGCCCGGACGGAGGATGGCCGGATCGATAATG
TCCGGGCGATTGGTGGCTCCGATGATGAACACATTCTTCTTGGCTCCCAT
GCCATCCATTTCGGTAAGGATCTGATTGATCACACGATCAGCGGCGCCGC
CAGCATCGCCGACATTACCGCCACGGGCTTTGGCGATCGAGTCCAGCTCG
TCAAAGAAGAGCACACAAGGAGCCGCCGAGCGAGCCTTATCGAAGATGTC
GCGCACGTTGGCCTCAGACTCGCCGAACCACATGGTCAGCAGCTCGGGAC
CCTTGACTGAGATGAAGTTCGCCTGGCACTCGTTGGCAATGGCCTTGGCC
AGCAGCGTCTTACCGCANCCAGGGGGTCCGTAGAAAAGGACACCGCGACT
GGGCTGCATGCAAAC
BO04104.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2331-PA | 2406 | TER94-RA | 1511..2403 | 911..19 | 4346 | 99.4 | Minus |
| CG2331-PB | 894 | TER94-RB | 1..891 | 909..19 | 4336 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TER94-RD | 3125 | CG2331-RD | 1748..2640 | 911..19 | 4394 | 99.4 | Minus |
| TER94-RC | 3058 | CG2331-RC | 1681..2573 | 911..19 | 4394 | 99.4 | Minus |
| TER94-RA | 3016 | CG2331-RA | 1639..2531 | 911..19 | 4394 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9992050..9992696 | 911..265 | 3179 | 99.4 | Minus |
| 2R | 25286936 | 2R | 9992763..9992917 | 264..110 | 760 | 99.4 | Minus |
| 2R | 25286936 | 2R | 9992981..9993074 | 112..19 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:39:37 has no hits.
BO04104.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:31 Download gff for
BO04104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-PA | 1506..2406 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:36 Download gff for
BO04104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2331-PA | 1506..2406 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:33 Download gff for
BO04104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 1634..2542 | 6..915 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:12 Download gff for
BO04104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 1634..2542 | 6..915 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:12 Download gff for
BO04104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9992045..9992696 | 265..915 | 99 | -> | Minus |
| 2R | 9992763..9992917 | 110..264 | 99 | -> | Minus |
| 2R | 9992984..9993085 | 6..109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:33 Download gff for
BO04104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5879550..5880201 | 265..915 | 99 | -> | Minus |
| arm_2R | 5880268..5880422 | 110..264 | 99 | -> | Minus |
| arm_2R | 5880489..5880590 | 6..109 | 96 | | Minus |
BO04104.5prime Sequence
846 bp (712 high quality bases) assembled on 2005-12-01
> BO04104.5prime
GAAGTTATCAGTCGACATGGCAGATTCCAAGGGTGAAGATCTGGCTACGG
CGATCCTGAAGCGCAAGGACCGTCCCAACCGACTGATTGTGGAAGAGGCG
CAGAATGACGACAACTCTGTGGTGTCGCTATCGCAGGCGAAGATGGATGA
GCTGCAGCTCTTCCGTGGCGACACCGTGATTCTGAAGGGTAAGCGCCGAA
AGGAGACGGTGTGCATCGTGCTCTCGGACGACACCTGTCCCGACGAGAAG
ATCCGCATGAACCGCGTGGTGCGCAACAACCTGTGCGTCCATCTTTCAGA
TGTGGTTTCCGTGCAGTCCTGCCCGGACGTCAAGTACGGCAAACGGGTGC
GCATCCTGCCCATCGACGAAAGCACCGAAGGCGTTACCGGCAACCTGTTC
GAGATCTATCTGAAGCCGTACTTCCTAGAGGCCTATCGGCCAATCCACAT
GGGCGACAACTTTATTGTGCGCGCCGCCATGCGTCCTATTGAGTTCAAGG
TGGTGCTGACCGACCCGGAGCCCTACTGCATCGTAGCTCCCGAGACTGTA
ATCTTCTGCGACGGTGATCCAATCAAGCGCGAGGAGGAGGAGGAGTCCCT
AAACGCCGTTGGCTACGATGATATCGGTGGTTGCCGCAAGCAGCTGGCCC
AGATCAAGGAGATGGTTGAGTTGCCTTTGCGGCATCCATCGCTCTTCAAG
GCCATTGGTGTGAAGCCACCGCGTGGTATTCTTATGTACGGTCCCCCGGG
TACCGGTAAGACCCTGATTGCCAGGGCTGTGGCCAACGAGACCGGAGCCT
TTTTCTTCCTGATTAACGGACCGGAGATCATGTCCAAACTGGCCGG
BO04104.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2331-PA | 2406 | TER94-RA | 1..830 | 17..846 | 4075 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TER94-RA | 3016 | CG2331-RA | 128..958 | 16..846 | 4110 | 99.6 | Plus |
| TER94-RE | 3055 | CG2331-RE | 183..1000 | 29..846 | 4030 | 99.5 | Plus |
| TER94-RC | 3058 | CG2331-RC | 183..1000 | 29..846 | 4030 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9990657..9991369 | 134..846 | 3520 | 99.6 | Plus |
| 2R | 25286936 | 2R | 9990470..9990574 | 33..137 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:01:47 has no hits.
BO04104.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:32 Download gff for
BO04104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-PA | 1..830 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:37 Download gff for
BO04104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2331-PA | 1..830 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:36:55 Download gff for
BO04104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 121..958 | 10..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:53:54 Download gff for
BO04104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 121..958 | 10..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:53:54 Download gff for
BO04104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9990471..9990573 | 34..136 | 100 | -> | Plus |
| 2R | 9990660..9991369 | 137..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:36:55 Download gff for
BO04104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5877976..5878078 | 34..136 | 100 | -> | Plus |
| arm_2R | 5878165..5878874 | 137..846 | 99 | | Plus |
BO04104.complete Sequence
2437 bp assembled on 2008-08-14
GenBank Submission: FJ629642
> BO04104.complete
GAAGTTATCAGTCGACATGGCAGATTCCAAGGGTGAAGATCTGGCTACGG
CGATCCTGAAGCGCAAGGACCGTCCCAACCGACTGATTGTGGAAGAGGCG
CAGAATGACGACAACTCTGTGGTGTCGCTATCGCAGGCGAAGATGGATGA
GCTGCAGCTCTTCCGTGGCGACACCGTGATTCTGAAGGGTAAGCGCCGAA
AGGAGACGGTGTGCATCGTGCTCTCGGACGACACCTGTCCCGACGAGAAG
ATCCGCATGAACCGCGTGGTGCGCAACAACCTGTGCGTCCATCTTTCAGA
TGTGGTTTCCGTGCAGTCCTGCCCGGACGTCAAGTACGGCAAACGGGTGC
GCATCCTGCCCATCGACGAAAGCACCGAAGGCGTTACCGGCAACCTGTTC
GAGATCTATCTGAAGCCGTACTTCCTAGAGGCCTATCGGCCAATCCACAT
GGGCGACAACTTTATTGTGCGCGCCGCCATGCGTCCTATTGAGTTCAAGG
TGGTGCTGACCGACCCGGAGCCCTACTGCATCGTAGCTCCCGAGACTGTA
ATCTTCTGCGACGGTGATCCAATCAAGCGCGAGGAGGAGGAGGAGTCCCT
AAACGCCGTTGGCTACGATGATATCGGTGGTTGCCGCAAGCAGCTGGCCC
AGATCAAGGAGATGGTTGAGTTGCCTTTGCGGCATCCATCGCTCTTCAAG
GCCATTGGTGTGAAGCCACCGCGTGGTATTCTTATGTACGGTCCCCCGGG
TACCGGTAAGACCCTGATTGCCAGGGCTGTGGCCAACGAGACCGGAGCCT
TTTTCTTCCTGATTAACGGACCGGAGATCATGTCCAAACTGGCCGGAGAG
TCGGAATCGAATCTGCGTAAGGCCTTCGAGGAAGCCGAGAAAAACTCGCC
GGCTATCATCTTCATCGATGAGATCGACGCTATTGCCCCCAAGCGTGACA
AGACCCACGGTGAGGTGGAGCGTCGCATTGTGTCGCAGCTTTTGACCCTG
ATGGATGGCATGAAGAAGAGCTCCCATCTGATCGTTATGGCTGCTACCAA
CAGGCCCAACTCCATTGACCCGGCCCTGCGTCGCTTTGGACGTTTTGATC
GTGAGATTGACATCGGCATTCCAGATGCCACTGGTCGGCTGGAGGTGCTG
CGCATTCACACCAAGAACATGAAGCTGCATGATGATGTTGACCTGGAGCA
GATTGCTGCCGAATCCCACGGACATGTGGGCGCTGATCTGGCTTCACTCT
GCTCTGAGGCTGCCCTTCAGCAAATCCGTGAGAAGATGGACCTCATCGAT
TTGGAAGACGATAAGATCGATGCCGAGGTGCTGGCGTCGCTGGCCGTGAC
AATGGAGAACTTCCGCTACGCTATGACCAAGTCCAGTCCATCGGCGCTGC
GTGAAACTGTTGTTGAGGTGCCCAACACCACCTGGACAGACATCGGCGGT
CTGGAGAGCGTCAAGAAGGAATTGCAGGAGCTGGTGCAATACCCAGTGGA
GCATCCGGACAAGTTCTTGAAGTTTGGCATGCAGCCCAGTCGCGGTGTCC
TTTTCTACGGACCCCCTGGTTGCGGTAAGACGCTGCTGGCCAAGGCCATT
GCCAACGAGTGCCAGGCGAACTTCATCTCAGTCAAGGGTCCCGAGCTGCT
GACCATGTGGTTCGGCGAGTCTGAGGCCAACGTGCGCGACATCTTCGATA
AGGCTCGCTCGGCGGCTCCTTGTGTGCTCTTCTTTGACGAGCTGGACTCG
ATCGCCAAAGCCCGTGGCGGTAATGTCGGCGATGCTGGCGGCGCCGCTGA
TCGTGTGATCAATCAGATCCTTACCGAAATGGATGGCATGGGAGCCAAGA
AGAATGTGTTCATCATCGGAGCCACCAATCGCCCGGACATTATCGATCCG
GCCATCCTCCGTCCGGGCCGTCTGGATCAGTTGATCTATATTCCGCTGCC
CGACGACAAATCGCGTGAGGCTATCCTGAAGGCTAACTTGCGCAAGTCGC
CGCTGGCCAAGGAAGTAGACCTTACCTACATCGCCAAGGTGACGCAGGGC
TTCTCTGGCGCCGATCTGACCGAGATCTGCCAGCGGGCTTGCAAGCTGGC
CATCCGACAGGCCATCGAGGCTGAAATTCGTCGCGAGAAGGAGCGCGCCG
AAAATCAGAACTCCGCGATGGACATGGACGAGGACGATCCAGTGCCGGAG
ATTACCAGCGCCCACTTCGAGGAGGCCATGAAGTTCGCTCGCCGTTCGGT
GTCCGATAATGACATCAGGAAGTACGAGATGTTTGCCCAGACTTTGCAGC
AGTCCCGTGGATTCGGACAGAACTTCAGATTCCCCGGTCAAACCGGCAAC
ACCTCAGGATCTGGTAACAACTTGCCAGTTAACTCGCCCGGCGACAACGG
CGACGATGATCTTTACAGTGCAAGCTTTCTAGACCAT
BO04104.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TER94-RA | 2406 | CG2331-PA | 1..2403 | 17..2419 | 11865 | 99.6 | Plus |
| TER94-RC | 2481 | CG2331-PC | 88..2478 | 29..2419 | 11790 | 99.5 | Plus |
| TER94-RE | 2478 | CG2331-PE | 88..2475 | 29..2419 | 11710 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TER94-RA | 3016 | CG2331-RA | 128..2531 | 16..2419 | 11870 | 99.6 | Plus |
| TER94-RC | 3058 | CG2331-RC | 183..2573 | 29..2419 | 11790 | 99.5 | Plus |
| TER94-RD | 3125 | CG2331-RD | 255..2640 | 34..2419 | 11780 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9990657..9992696 | 134..2173 | 10065 | 99.6 | Plus |
| 2R | 25286936 | 2R | 9992763..9992917 | 2174..2328 | 760 | 99.4 | Plus |
| 2R | 25286936 | 2R | 9990470..9990574 | 33..137 | 525 | 100 | Plus |
| 2R | 25286936 | 2R | 9992981..9993074 | 2326..2419 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:05:01 has no hits.
BO04104.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:35 Download gff for
BO04104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 119..2540 | 10..2432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:25 Download gff for
BO04104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 129..2531 | 17..2421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:35 Download gff for
BO04104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 127..2529 | 17..2421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:31 Download gff for
BO04104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 129..2531 | 17..2421 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:31 Download gff for
BO04104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9992763..9992917 | 2174..2328 | 99 | -> | Plus |
| 2R | 9992984..9993074 | 2329..2421 | 97 | | Plus |
| 2R | 9989287..9989303 | 17..33 | 100 | -> | Plus |
| 2R | 9990471..9990573 | 34..136 | 100 | -> | Plus |
| 2R | 9990660..9992696 | 137..2173 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:25 Download gff for
BO04104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5876792..5876808 | 17..33 | 100 | -> | Plus |
| arm_2R | 5877976..5878078 | 34..136 | 100 | -> | Plus |
| arm_2R | 5878165..5880201 | 137..2173 | 99 | -> | Plus |
| arm_2R | 5880268..5880422 | 2174..2328 | 99 | -> | Plus |
| arm_2R | 5880489..5880579 | 2329..2421 | 97 | | Plus |
BO04104.pep Sequence
Translation from 16 to 2437
> BO04104.pep
MADSKGEDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFR
GDTVILKGKRRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQ
SCPDVKYGKRVRILPIDESTEGVTGNLFEIYLKPYFLEAYRPIHMGDNFI
VRAAMRPIEFKVVLTDPEPYCIVAPETVIFCDGDPIKREEEEESLNAVGY
DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTL
IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFI
DEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSI
DPALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMKLHDDVDLEQIAAES
HGHVGADLASLCSEAALQQIREKMDLIDLEDDKIDAEVLASLAVTMENFR
YAMTKSSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKF
LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG
ESEANVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQ
ILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSR
EAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAI
EAEIRREKERAENQNSAMDMDEDDPVPEITSAHFEEAMKFARRSVSDNDI
RKYEMFAQTLQQSRGFGQNFRFPGQTGNTSGSGNNLPVNSPGDNGDDDLY
SASFLDH
BO04104.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TER94-PA | 801 | CG2331-PA | 1..801 | 1..801 | 4110 | 100 | Plus |
| TER94-PC | 826 | CG2331-PC | 30..826 | 5..801 | 4083 | 99.9 | Plus |
| TER94-PE | 825 | CG2331-PE | 30..825 | 5..801 | 4066 | 99.7 | Plus |
| TER94-PD | 759 | CG2331-PD | 1..759 | 43..801 | 3907 | 100 | Plus |
| CG5776-PB | 799 | CG5776-PB | 255..766 | 184..703 | 974 | 37.3 | Plus |
