Clone Sequence Records
BO04105.3prime Sequence
587 bp (586 high quality bases) assembled on 2005-12-01
> BO04105.3prime
ATGGTCTAGAAAGCTTGCCTCCCGATGCAGCAGCACGAAAATGGCCAAAA
TAGAGAGAATGGCCCACTTAACCTTGGGATATTCGTTCATGAAGATCGTG
ATGATGCCCACGTAAGGCAGGAAGCCCCTGGCCCGGCCCACAATGTCCTT
TTTGGTCAGCCACAGCTGGTTGGGTGCATACAGGCCCCGGTCGTCCACGT
TGTTATTGTCGCCCTTGGTCAGGAACTTGACGGATCCGTCCTCTTTTTCG
TGCAGCTTGATGACGCGGTGTACAATGGGTATGTCCCTGCCCTCCACCTT
GAAGACGACGATCTCGCCGACGCGCACCGGCTCCTCCTTGTAGTTAGTGA
GGAAGAGGAGGTCGCCGCGGTGGAAAGCCGGCTCCATGCTGCCACTGAGC
ACGACAACGATCGGCGACTCGCTGCCGGTGACCACCATCAGGCCCTTCCA
GATCATCAGCGCCGAGGAGACGATCATGGCGAAGCTCAGCACCTGGTACA
GCGACTGACGCTTGTTCATTCTGTTGAAGTCGCCCAGCATCTCGTCAATC
TGCAACATGCTGGCTACGCCCATGTCGACTGATAACT
BO04105.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2358-PA | 558 | CG2358-RA | 1..555 | 573..19 | 2775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:28:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twr-RA | 855 | CG2358-RA | 147..702 | 574..19 | 2780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:28:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6658165..6658427 | 507..245 | 1315 | 100 | Minus |
3R | 32079331 | 3R | 6659003..6659180 | 244..67 | 890 | 100 | Minus |
3R | 32079331 | 3R | 6658028..6658097 | 574..505 | 350 | 100 | Minus |
3R | 32079331 | 3R | 6659240..6659289 | 68..19 | 250 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 15:28:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5786..5861 | 175..100 | 110 | 65.8 | Minus |
BO04105.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:34 Download gff for
BO04105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2358-PA | 1..558 | 18..573 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:38 Download gff for
BO04105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2358-PA | 1..558 | 18..573 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:09 Download gff for
BO04105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twr-RA | 143..702 | 19..581 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:30 Download gff for
BO04105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twr-RA | 143..702 | 19..581 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:30 Download gff for
BO04105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6658024..6658097 | 505..581 | 96 | -> | Minus |
3R | 6658168..6658427 | 245..504 | 100 | -> | Minus |
3R | 6659003..6659180 | 67..244 | 100 | -> | Minus |
3R | 6659242..6659289 | 19..66 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:09 Download gff for
BO04105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2483746..2483819 | 505..581 | 96 | -> | Minus |
arm_3R | 2483890..2484149 | 245..504 | 100 | -> | Minus |
arm_3R | 2484725..2484902 | 67..244 | 100 | -> | Minus |
arm_3R | 2484964..2485011 | 19..66 | 100 | | Minus |
BO04105.5prime Sequence
587 bp (586 high quality bases) assembled on 2005-12-01
> BO04105.5prime
GAAGTTATCAGTCGACATGGGCGTAGCCAGCATGTTGCAGATTGACGAGA
TGCTGGGCGACTTCAACAGAATGAACAAGCGTCAGTCGCTGTACCAGGTG
CTGAGCTTCGCCATGATCGTCTCCTCGGCGCTGATGATCTGGAAGGGCCT
GATGGTGGTCACCGGCAGCGAGTCGCCGATCGTTGTCGTGCTCAGTGGCA
GCATGGAGCCGGCTTTCCACCGCGGCGACCTCCTCTTCCTCACTAACTAC
AAGGAGGAGCCGGTGCGCGTCGGCGAGATCGTCGTCTTCAAGGTGGAGGG
CAGGGACATACCCATTGTACACCGCGTCATCAAGCTGCACGAAAAAGAGG
ACGGATCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGGACGAC
CGGGGCCTGTATGCACCCAACCAGCTGTGGCTGACCAAAAAGGACATTGT
GGGCCGGGCCAGGGGCTTCCTGCCTTACGTGGGCATCATCACGATCTTCA
TGAACGAATATCCCAAGGTTAAGTGGGCCATTCTCTCTATTTTGGCCATT
TTCGTGCTGCTGCATCGGGAGGCAAGCTTTCTAGACC
BO04105.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2358-PA | 558 | CG2358-RA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twr-RA | 855 | CG2358-RA | 147..702 | 16..571 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6658165..6658427 | 83..345 | 1315 | 100 | Plus |
3R | 32079331 | 3R | 6659003..6659180 | 346..523 | 890 | 100 | Plus |
3R | 32079331 | 3R | 6658028..6658097 | 16..85 | 350 | 100 | Plus |
3R | 32079331 | 3R | 6659240..6659289 | 522..571 | 250 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 16:42:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5786..5861 | 415..490 | 110 | 65.8 | Plus |
BO04105.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:35 Download gff for
BO04105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2358-PA | 1..558 | 17..572 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:40 Download gff for
BO04105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2358-PA | 1..558 | 17..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:39:57 Download gff for
BO04105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twr-RA | 143..702 | 9..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:32 Download gff for
BO04105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twr-RA | 143..702 | 9..571 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:32 Download gff for
BO04105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6659003..6659180 | 346..523 | 100 | -> | Plus |
3R | 6659242..6659289 | 524..571 | 100 | | Plus |
3R | 6658024..6658097 | 9..85 | 96 | -> | Plus |
3R | 6658168..6658427 | 86..345 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:39:57 Download gff for
BO04105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2483746..2483819 | 9..85 | 96 | -> | Plus |
arm_3R | 2483890..2484149 | 86..345 | 100 | -> | Plus |
arm_3R | 2484725..2484902 | 346..523 | 100 | -> | Plus |
arm_3R | 2484964..2485011 | 524..571 | 100 | | Plus |
BO04105.complete Sequence
589 bp (589 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629643
> BO04105.complete
GAAGTTATCAGTCGACATGGGCGTAGCCAGCATGTTGCAGATTGACGAGA
TGCTGGGCGACTTCAACAGAATGAACAAGCGTCAGTCGCTGTACCAGGTG
CTGAGCTTCGCCATGATCGTCTCCTCGGCGCTGATGATCTGGAAGGGCCT
GATGGTGGTCACCGGCAGCGAGTCGCCGATCGTTGTCGTGCTCAGTGGCA
GCATGGAGCCGGCTTTCCACCGCGGCGACCTCCTCTTCCTCACTAACTAC
AAGGAGGAGCCGGTGCGCGTCGGCGAGATCGTCGTCTTCAAGGTGGAGGG
CAGGGACATACCCATTGTACACCGCGTCATCAAGCTGCACGAAAAAGAGG
ACGGATCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGGACGAC
CGGGGCCTGTATGCACCCAACCAGCTGTGGCTGACCAAAAAGGACATTGT
GGGCCGGGCCAGGGGCTTCCTGCCTTACGTGGGCATCATCACGATCTTCA
TGAACGAATATCCCAAGGTTAAGTGGGCCATTCTCTCTATTTTGGCCATT
TTCGTGCTGCTGCATCGGGAGGCAAGCTTTCTAGACCAT
BO04105.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twr-RA | 558 | CG2358-PA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twr-RA | 855 | CG2358-RA | 147..702 | 16..571 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6658165..6658427 | 83..345 | 1315 | 100 | Plus |
3R | 32079331 | 3R | 6659003..6659180 | 346..523 | 890 | 100 | Plus |
3R | 32079331 | 3R | 6658028..6658097 | 16..85 | 350 | 100 | Plus |
3R | 32079331 | 3R | 6659240..6659289 | 522..571 | 250 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5786..5861 | 415..490 | 110 | 65.8 | Plus |
BO04105.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:36 Download gff for
BO04105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spase18-21-RA | 1..558 | 17..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:34 Download gff for
BO04105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spase18-21-RA | 143..702 | 9..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:12 Download gff for
BO04105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twr-RA | 148..702 | 17..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:36 Download gff for
BO04105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spase18-21-RA | 143..702 | 9..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:09 Download gff for
BO04105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twr-RA | 148..702 | 17..573 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:09 Download gff for
BO04105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6658168..6658427 | 86..345 | 100 | -> | Plus |
3R | 6659003..6659180 | 346..523 | 100 | -> | Plus |
3R | 6659242..6659289 | 524..573 | 96 | | Plus |
3R | 6658029..6658097 | 17..85 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:12 Download gff for
BO04105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2483751..2483819 | 17..85 | 100 | -> | Plus |
arm_3R | 2483890..2484149 | 86..345 | 100 | -> | Plus |
arm_3R | 2484725..2484902 | 346..523 | 100 | -> | Plus |
arm_3R | 2484964..2485011 | 524..573 | 96 | | Plus |
BO04105.pep Sequence
Translation from 16 to 589
> BO04105.pep
MGVASMLQIDEMLGDFNRMNKRQSLYQVLSFAMIVSSALMIWKGLMVVTG
SESPIVVVLSGSMEPAFHRGDLLFLTNYKEEPVRVGEIVVFKVEGRDIPI
VHRVIKLHEKEDGSVKFLTKGDNNNVDDRGLYAPNQLWLTKKDIVGRARG
FLPYVGIITIFMNEYPKVKWAILSILAIFVLLHREASFLDH
BO04105.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twr-PA | 185 | CG2358-PA | 1..185 | 1..185 | 944 | 100 | Plus |