Clone BO04105 Report

Search the DGRC for BO04105

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:41
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptSpase18-21-RA
Protein status:BO04105.pep: validated full length
Sequenced Size:589

Clone Sequence Records

BO04105.3prime Sequence

587 bp (586 high quality bases) assembled on 2005-12-01

> BO04105.3prime
ATGGTCTAGAAAGCTTGCCTCCCGATGCAGCAGCACGAAAATGGCCAAAA
TAGAGAGAATGGCCCACTTAACCTTGGGATATTCGTTCATGAAGATCGTG
ATGATGCCCACGTAAGGCAGGAAGCCCCTGGCCCGGCCCACAATGTCCTT
TTTGGTCAGCCACAGCTGGTTGGGTGCATACAGGCCCCGGTCGTCCACGT
TGTTATTGTCGCCCTTGGTCAGGAACTTGACGGATCCGTCCTCTTTTTCG
TGCAGCTTGATGACGCGGTGTACAATGGGTATGTCCCTGCCCTCCACCTT
GAAGACGACGATCTCGCCGACGCGCACCGGCTCCTCCTTGTAGTTAGTGA
GGAAGAGGAGGTCGCCGCGGTGGAAAGCCGGCTCCATGCTGCCACTGAGC
ACGACAACGATCGGCGACTCGCTGCCGGTGACCACCATCAGGCCCTTCCA
GATCATCAGCGCCGAGGAGACGATCATGGCGAAGCTCAGCACCTGGTACA
GCGACTGACGCTTGTTCATTCTGTTGAAGTCGCCCAGCATCTCGTCAATC
TGCAACATGCTGGCTACGCCCATGTCGACTGATAACT

BO04105.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG2358-PA 558 CG2358-RA 1..555 573..19 2775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
twr-RA 855 CG2358-RA 147..702 574..19 2780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6658165..6658427 507..245 1315 100 Minus
3R 32079331 3R 6659003..6659180 244..67 890 100 Minus
3R 32079331 3R 6658028..6658097 574..505 350 100 Minus
3R 32079331 3R 6659240..6659289 68..19 250 100 Minus
Blast to na_te.dros performed 2015-02-11 15:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5786..5861 175..100 110 65.8 Minus

BO04105.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:34 Download gff for BO04105.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2358-PA 1..558 18..573 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:38 Download gff for BO04105.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2358-PA 1..558 18..573 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:09 Download gff for BO04105.3prime
Subject Subject Range Query Range Percent Splice Strand
twr-RA 143..702 19..581 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:30 Download gff for BO04105.3prime
Subject Subject Range Query Range Percent Splice Strand
twr-RA 143..702 19..581 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:30 Download gff for BO04105.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6658024..6658097 505..581 96 -> Minus
3R 6658168..6658427 245..504 100 -> Minus
3R 6659003..6659180 67..244 100 -> Minus
3R 6659242..6659289 19..66 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:09 Download gff for BO04105.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2483746..2483819 505..581 96 -> Minus
arm_3R 2483890..2484149 245..504 100 -> Minus
arm_3R 2484725..2484902 67..244 100 -> Minus
arm_3R 2484964..2485011 19..66 100   Minus

BO04105.5prime Sequence

587 bp (586 high quality bases) assembled on 2005-12-01

> BO04105.5prime
GAAGTTATCAGTCGACATGGGCGTAGCCAGCATGTTGCAGATTGACGAGA
TGCTGGGCGACTTCAACAGAATGAACAAGCGTCAGTCGCTGTACCAGGTG
CTGAGCTTCGCCATGATCGTCTCCTCGGCGCTGATGATCTGGAAGGGCCT
GATGGTGGTCACCGGCAGCGAGTCGCCGATCGTTGTCGTGCTCAGTGGCA
GCATGGAGCCGGCTTTCCACCGCGGCGACCTCCTCTTCCTCACTAACTAC
AAGGAGGAGCCGGTGCGCGTCGGCGAGATCGTCGTCTTCAAGGTGGAGGG
CAGGGACATACCCATTGTACACCGCGTCATCAAGCTGCACGAAAAAGAGG
ACGGATCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGGACGAC
CGGGGCCTGTATGCACCCAACCAGCTGTGGCTGACCAAAAAGGACATTGT
GGGCCGGGCCAGGGGCTTCCTGCCTTACGTGGGCATCATCACGATCTTCA
TGAACGAATATCCCAAGGTTAAGTGGGCCATTCTCTCTATTTTGGCCATT
TTCGTGCTGCTGCATCGGGAGGCAAGCTTTCTAGACC

BO04105.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG2358-PA 558 CG2358-RA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
twr-RA 855 CG2358-RA 147..702 16..571 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6658165..6658427 83..345 1315 100 Plus
3R 32079331 3R 6659003..6659180 346..523 890 100 Plus
3R 32079331 3R 6658028..6658097 16..85 350 100 Plus
3R 32079331 3R 6659240..6659289 522..571 250 100 Plus
Blast to na_te.dros performed 2015-02-10 16:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5786..5861 415..490 110 65.8 Plus

BO04105.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:35 Download gff for BO04105.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2358-PA 1..558 17..572 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:40 Download gff for BO04105.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2358-PA 1..558 17..572 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:39:57 Download gff for BO04105.5prime
Subject Subject Range Query Range Percent Splice Strand
twr-RA 143..702 9..571 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:32 Download gff for BO04105.5prime
Subject Subject Range Query Range Percent Splice Strand
twr-RA 143..702 9..571 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:32 Download gff for BO04105.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6659003..6659180 346..523 100 -> Plus
3R 6659242..6659289 524..571 100   Plus
3R 6658024..6658097 9..85 96 -> Plus
3R 6658168..6658427 86..345 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:39:57 Download gff for BO04105.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2483746..2483819 9..85 96 -> Plus
arm_3R 2483890..2484149 86..345 100 -> Plus
arm_3R 2484725..2484902 346..523 100 -> Plus
arm_3R 2484964..2485011 524..571 100   Plus

BO04105.complete Sequence

589 bp (589 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629643

> BO04105.complete
GAAGTTATCAGTCGACATGGGCGTAGCCAGCATGTTGCAGATTGACGAGA
TGCTGGGCGACTTCAACAGAATGAACAAGCGTCAGTCGCTGTACCAGGTG
CTGAGCTTCGCCATGATCGTCTCCTCGGCGCTGATGATCTGGAAGGGCCT
GATGGTGGTCACCGGCAGCGAGTCGCCGATCGTTGTCGTGCTCAGTGGCA
GCATGGAGCCGGCTTTCCACCGCGGCGACCTCCTCTTCCTCACTAACTAC
AAGGAGGAGCCGGTGCGCGTCGGCGAGATCGTCGTCTTCAAGGTGGAGGG
CAGGGACATACCCATTGTACACCGCGTCATCAAGCTGCACGAAAAAGAGG
ACGGATCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGGACGAC
CGGGGCCTGTATGCACCCAACCAGCTGTGGCTGACCAAAAAGGACATTGT
GGGCCGGGCCAGGGGCTTCCTGCCTTACGTGGGCATCATCACGATCTTCA
TGAACGAATATCCCAAGGTTAAGTGGGCCATTCTCTCTATTTTGGCCATT
TTCGTGCTGCTGCATCGGGAGGCAAGCTTTCTAGACCAT

BO04105.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
twr-RA 558 CG2358-PA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
twr-RA 855 CG2358-RA 147..702 16..571 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6658165..6658427 83..345 1315 100 Plus
3R 32079331 3R 6659003..6659180 346..523 890 100 Plus
3R 32079331 3R 6658028..6658097 16..85 350 100 Plus
3R 32079331 3R 6659240..6659289 522..571 250 100 Plus
Blast to na_te.dros performed 2014-11-27 14:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5786..5861 415..490 110 65.8 Plus

BO04105.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:36 Download gff for BO04105.complete
Subject Subject Range Query Range Percent Splice Strand
Spase18-21-RA 1..558 17..572 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:34 Download gff for BO04105.complete
Subject Subject Range Query Range Percent Splice Strand
Spase18-21-RA 143..702 9..571 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:12 Download gff for BO04105.complete
Subject Subject Range Query Range Percent Splice Strand
twr-RA 148..702 17..573 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:36 Download gff for BO04105.complete
Subject Subject Range Query Range Percent Splice Strand
Spase18-21-RA 143..702 9..571 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:09 Download gff for BO04105.complete
Subject Subject Range Query Range Percent Splice Strand
twr-RA 148..702 17..573 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:09 Download gff for BO04105.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6658168..6658427 86..345 100 -> Plus
3R 6659003..6659180 346..523 100 -> Plus
3R 6659242..6659289 524..573 96   Plus
3R 6658029..6658097 17..85 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:12 Download gff for BO04105.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2483751..2483819 17..85 100 -> Plus
arm_3R 2483890..2484149 86..345 100 -> Plus
arm_3R 2484725..2484902 346..523 100 -> Plus
arm_3R 2484964..2485011 524..573 96   Plus

BO04105.pep Sequence

Translation from 16 to 589

> BO04105.pep
MGVASMLQIDEMLGDFNRMNKRQSLYQVLSFAMIVSSALMIWKGLMVVTG
SESPIVVVLSGSMEPAFHRGDLLFLTNYKEEPVRVGEIVVFKVEGRDIPI
VHRVIKLHEKEDGSVKFLTKGDNNNVDDRGLYAPNQLWLTKKDIVGRARG
FLPYVGIITIFMNEYPKVKWAILSILAIFVLLHREASFLDH

BO04105.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
twr-PA 185 CG2358-PA 1..185 1..185 944 100 Plus