Clone Sequence Records
BO04106.3prime Sequence
965 bp (810 high quality bases) assembled on 2005-12-01
> BO04106.3prime
ATGGTCTAGAAAGCTTGCGGAGTCACGTTGGTAGATTTTGTTGAGTATTT
GCAGGAAGGTCTGGTGAGGCACCCCGCGTGAGGTTTGTTGTATGTGCGTT
TTAATCATGTTGTAGGATTCCTCCTCGAAAATGGCATAGGTGGATGGCAG
TCCAAGTTCCTTGTACAGTTCTTTCACTCTCTCCACTTTAGCTGGTTCTT
CTTTGCCATAGCAATCGACCATGATTTGCTTTTGCTCGACATTGGCTCGC
TGCATAGCCACCACAGCCAGCCACGAGCACTTGTTGTCCTGAATGTCGGT
TCCAATTTTACCAGTCACTTCCGGATTACCGAAGCAGTCGAGAAAATCAT
CTTGAACCTGGAAAAAGTTGCCCATTTCTAGGAGAATGGTCTTCGATTGA
CGGAAGGCCTCTGCGTCTTTATAGCCAGCCAAGTGCAAAGCAAGTGCGAA
TGGAAGGTAGAAGGAGTAATAGGCAGTCTTATTTTCGACAATTGCTTTGT
AGTTTTCCATTGTGAATTCCGAGACACAGCGGTTCGAGTTCAGTTGGTCC
AACGATTGTCCGCAGGTAGTGATGTATGTGATTTCGTGGAAGAGCTCCAT
TAGGGCGACATAGCAGTCCAAGTGGCTGAAGTGCTTCTTGAGAATGGCAT
ACATGGCGTTTTCAATCATAAGAGCATCGTTAATGGCAGTCAGGCCCACG
TTCTCCACCTTGTGCCAGCAGGGTTGGCCGCGTCTGGTGGTGCTGTTGTC
CATCACATCGTCTGAGATGATGAAAAAACTTTGGAGCATTTCCACGCACC
AGCCCAGATACTGGGCGAGCTTTATGTTCTCCGGCGTAAGATCCTGGGTG
GGCACTAGATTCTTATACGTGAGCACGGTGAGGATGCCGCGGTTCTTCTT
GCCCCTGGGCACATTGTACTGGAGGACTTGGGCGAACCATTTGGCTGCGT
CGCTGCAATTGTATG
BO04106.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12389-PA | 1260 | Fpps-RA | 311..1257 | 965..19 | 4610 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:01:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fpps-RA | 1465 | CG12389-RA | 397..1343 | 965..19 | 4660 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11306159..11306521 | 425..787 | 1815 | 100 | Plus |
2R | 25286936 | 2R | 11305872..11306099 | 198..425 | 1095 | 98.7 | Plus |
2R | 25286936 | 2R | 11305633..11305813 | 19..199 | 890 | 99.4 | Plus |
2R | 25286936 | 2R | 11306580..11306758 | 787..965 | 880 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:01:54 has no hits.
BO04106.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:36 Download gff for
BO04106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fpps-PA | 311..1260 | 15..965 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:41 Download gff for
BO04106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12389-PA | 311..1260 | 15..965 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:36:56 Download gff for
BO04106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fpps-RA | 397..1349 | 11..965 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:15 Download gff for
BO04106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fpps-RA | 397..1349 | 11..965 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:54:15 Download gff for
BO04106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11305627..11305811 | 11..197 | 97 | <- | Plus |
2R | 11305872..11306098 | 198..424 | 98 | <- | Plus |
2R | 11306159..11306520 | 425..786 | 100 | <- | Plus |
2R | 11306580..11306758 | 787..965 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:36:56 Download gff for
BO04106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7193132..7193316 | 11..197 | 97 | <- | Plus |
arm_2R | 7193377..7193603 | 198..424 | 98 | <- | Plus |
arm_2R | 7193664..7194025 | 425..786 | 100 | <- | Plus |
arm_2R | 7194085..7194263 | 787..965 | 99 | | Plus |
BO04106.5prime Sequence
837 bp (809 high quality bases) assembled on 2005-12-01
> BO04106.5prime
GAAGTTATCAGTCGACATGTTTAAACTGGCCCGTATGCTCCTGCCGCAGC
AGCGGATCCTGGCCAGCCCGCTGCGCCTGCAACGCCTGATCTCTACCAGC
GACGAGGTCAACGCAGAGCCCATCATCAAGTCCATGGACACCATTGGCGG
CCTCCCCACCGAACTGGTCAACGAACAGAAGCTGAAGAAGACTAGCAGAA
CCTTATCGACGCTCCAAAATCACTCGGTTCCCATTGCCGCTCGCGTCACG
GTGTCGAAAGATGAGAGTCGCGACTTTATGGCCGTGTTCCCAGATCTTGT
GCGTGACATCACCACCGTGACGAAGGCATACAATTGCAGCGACGCAGCCA
AATGGTTCGCCCAAGTCCTCCAGTACAATGTGCCCAGGGGCAAGAAGAAC
CGCGGCATCCTCACCGTGCTCACGTATAAGAATCTAGTGCCCACCCAGGA
TCTTACGCCGGAGAACATAAAGCTCGCCCAGTATCTGGGCTGGTGCGTGG
AAATGCTCCAAAGTTTTTTCATCATCTCAGACGATGTGATGGACAACAGC
ACCACCAGACGCGGCCAACCCTGCTGGCACAAGGTGGAGAACGTGGGCCT
GACTGCCATTAACGATGCTCTTATGATTGAAAACGCCATGTATGCCATTC
TCAAGAAGCACTTCAGCCACTTGGACTGCTATGTCGCCCTAATGGAGCTC
TTCCACGAAATCACATACATCACTACCTGCGGACAATCGTTGGACCAACT
GAACTCGAACCGCTGTGTCTCGGAATTCACAATGGAAAACTACAAAGCAA
TTGTCGAAAATAAGACTGCCTATTACTCCTTCTACCT
BO04106.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12389-PA | 1260 | Fpps-RA | 1..821 | 17..837 | 4080 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fpps-RA | 1465 | CG12389-RA | 87..907 | 17..837 | 4090 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11306189..11306521 | 837..505 | 1665 | 100 | Minus |
2R | 25286936 | 2R | 11306580..11306794 | 505..291 | 1060 | 99.5 | Minus |
2R | 25286936 | 2R | 11307261..11307442 | 198..17 | 910 | 100 | Minus |
2R | 25286936 | 2R | 11306865..11306962 | 293..196 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:21:55 has no hits.
BO04106.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:37 Download gff for
BO04106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fpps-PA | 1..821 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:42 Download gff for
BO04106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12389-PA | 1..821 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:46:25 Download gff for
BO04106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fpps-RA | 87..907 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:48:38 Download gff for
BO04106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fpps-RA | 87..907 | 17..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:48:38 Download gff for
BO04106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11306189..11306520 | 506..837 | 100 | <- | Minus |
2R | 11306580..11306791 | 294..505 | 99 | <- | Minus |
2R | 11306865..11306959 | 199..293 | 100 | <- | Minus |
2R | 11307261..11307442 | 17..198 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:46:25 Download gff for
BO04106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7193694..7194025 | 506..837 | 100 | <- | Minus |
arm_2R | 7194085..7194296 | 294..505 | 99 | <- | Minus |
arm_2R | 7194370..7194464 | 199..293 | 100 | <- | Minus |
arm_2R | 7194766..7194947 | 17..198 | 100 | | Minus |
BO04106.complete Sequence
1291 bp (1291 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629644
> BO04106.complete
GAAGTTATCAGTCGACATGTTTAAACTGGCCCGTATGCTCCTGCCGCAGC
AGCGGATCCTGGCCAGCCCGCTGCGCCTGCAACGCCTGATCTCTACCAGC
GACGAGGTCAACGCAGAGCCCATCATCAAGTCCATGGACACCATTGGCGG
CCTCCCCACCGAACTGGTCAACGAACAGAAGCTGAAGAAGACTAGCAGAA
CCTTATCGACGCTCCAAAATCACTCGGTTCCCATTGCCGCTCGCGTCACG
GTGTCGAAAGATGAGAGTCGCGACTTTATGGCCGTGTTCCCAGATCTTGT
GCGTGACATCACCACCGTGACGAAGGCATACAATTGCAGCGACGCAGCCA
AATGGTTCGCCCAAGTCCTCCAGTACAATGTGCCCAGGGGCAAGAAGAAC
CGCGGCATCCTCACCGTGCTCACGTATAAGAATCTAGTGCCCACCCAGGA
TCTTACGCCGGAGAACATAAAGCTCGCCCAGTATCTGGGCTGGTGCGTGG
AAATGCTCCAAAGTTTTTTCATCATCTCAGACGATGTGATGGACAACAGC
ACCACCAGACGCGGCCAACCCTGCTGGCACAAGGTGGAGAACGTGGGCCT
GACTGCCATTAACGATGCTCTTATGATTGAAAACGCCATGTATGCCATTC
TCAAGAAGCACTTCAGCCACTTGGACTGCTATGTCGCCCTAATGGAGCTC
TTCCACGAAATCACATACATCACTACCTGCGGACAATCGTTGGACCAACT
GAACTCGAACCGCTGTGTCTCGGAATTCACAATGGAAAACTACAAAGCAA
TTGTCGAAAATAAGACTGCCTATTACTCCTTCTACCTTCCATTCGCACTT
GCTTTGCACTTGGCTGGCTATAAAGACGCAGAGGCCTTCCGTCAATCGAA
GACCATTCTCCTAGAAATGGGCAACTTTTTCCAGGTTCAAGATGATTTTC
TCGACTGCTTCGGTAATCCGGAAGTGACTGGTAAAATTGGAACCGACATT
CAGGACAACAAGTGCTCGTGGCTGGCTGTGGTGGCTATGCAGCGAGCCAA
TGTCGAGCAAAAGCAAATCATGGTCGATTGCTATGGCAAAGAAGAACCAG
CTAAAGTGGAGAGAGTGAAAGAACTGTACAAGGAACTTGGACTGCCATCC
ACCTATGCCATTTTCGAGGAGGAATCCTACAACATGATTAAAACGCACAT
ACAACAAACCTCACGCGGGGTGCCTCACCAGACCTTCCTGCAAATACTCA
ACAAAATCTACCAACGTGACTCCGCAAGCTTTCTAGACCAT
BO04106.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fpps-RA | 1260 | CG12389-PA | 1..1257 | 17..1273 | 6210 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fpps-RA | 1465 | CG12389-RA | 87..1343 | 17..1273 | 6210 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11306159..11306521 | 867..505 | 1815 | 100 | Minus |
2R | 25286936 | 2R | 11305872..11306099 | 1094..867 | 1095 | 98.7 | Minus |
2R | 25286936 | 2R | 11306580..11306794 | 505..291 | 1060 | 99.5 | Minus |
2R | 25286936 | 2R | 11307261..11307442 | 198..17 | 910 | 100 | Minus |
2R | 25286936 | 2R | 11305633..11305813 | 1273..1093 | 890 | 99.4 | Minus |
2R | 25286936 | 2R | 11306865..11306962 | 293..196 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:34:51 has no hits.
BO04106.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:37 Download gff for
BO04106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fpps-RA | 1..1260 | 17..1277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:36 Download gff for
BO04106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fpps-RA | 124..1386 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:56 Download gff for
BO04106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fpps-RA | 93..1343 | 23..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:38 Download gff for
BO04106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fpps-RA | 124..1386 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:31 Download gff for
BO04106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fpps-RA | 93..1343 | 23..1275 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:31 Download gff for
BO04106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11305631..11305811 | 1095..1275 | 98 | <- | Minus |
2R | 11305872..11306098 | 868..1094 | 98 | <- | Minus |
2R | 11306159..11306520 | 506..867 | 100 | <- | Minus |
2R | 11306580..11306791 | 294..505 | 99 | <- | Minus |
2R | 11306865..11306959 | 199..293 | 100 | <- | Minus |
2R | 11307261..11307436 | 23..198 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:56 Download gff for
BO04106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7193136..7193316 | 1095..1275 | 98 | <- | Minus |
arm_2R | 7193377..7193603 | 868..1094 | 98 | <- | Minus |
arm_2R | 7193664..7194025 | 506..867 | 100 | <- | Minus |
arm_2R | 7194085..7194296 | 294..505 | 99 | <- | Minus |
arm_2R | 7194370..7194464 | 199..293 | 100 | <- | Minus |
arm_2R | 7194766..7194941 | 23..198 | 100 | | Minus |
BO04106.pep Sequence
Translation from 16 to 1291
> BO04106.pep
MFKLARMLLPQQRILASPLRLQRLISTSDEVNAEPIIKSMDTIGGLPTEL
VNEQKLKKTSRTLSTLQNHSVPIAARVTVSKDESRDFMAVFPDLVRDITT
VTKAYNCSDAAKWFAQVLQYNVPRGKKNRGILTVLTYKNLVPTQDLTPEN
IKLAQYLGWCVEMLQSFFIISDDVMDNSTTRRGQPCWHKVENVGLTAIND
ALMIENAMYAILKKHFSHLDCYVALMELFHEITYITTCGQSLDQLNSNRC
VSEFTMENYKAIVENKTAYYSFYLPFALALHLAGYKDAEAFRQSKTILLE
MGNFFQVQDDFLDCFGNPEVTGKIGTDIQDNKCSWLAVVAMQRANVEQKQ
IMVDCYGKEEPAKVERVKELYKELGLPSTYAIFEEESYNMIKTHIQQTSR
GVPHQTFLQILNKIYQRDSASFLDH
BO04106.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fpps-PA | 419 | CG12389-PA | 1..419 | 1..419 | 2173 | 100 | Plus |