Clone BO04106 Report

Search the DGRC for BO04106

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:41
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptFpps-RA
Protein status:BO04106.pep: validated full length
Sequenced Size:1291

Clone Sequence Records

BO04106.3prime Sequence

965 bp (810 high quality bases) assembled on 2005-12-01

> BO04106.3prime
ATGGTCTAGAAAGCTTGCGGAGTCACGTTGGTAGATTTTGTTGAGTATTT
GCAGGAAGGTCTGGTGAGGCACCCCGCGTGAGGTTTGTTGTATGTGCGTT
TTAATCATGTTGTAGGATTCCTCCTCGAAAATGGCATAGGTGGATGGCAG
TCCAAGTTCCTTGTACAGTTCTTTCACTCTCTCCACTTTAGCTGGTTCTT
CTTTGCCATAGCAATCGACCATGATTTGCTTTTGCTCGACATTGGCTCGC
TGCATAGCCACCACAGCCAGCCACGAGCACTTGTTGTCCTGAATGTCGGT
TCCAATTTTACCAGTCACTTCCGGATTACCGAAGCAGTCGAGAAAATCAT
CTTGAACCTGGAAAAAGTTGCCCATTTCTAGGAGAATGGTCTTCGATTGA
CGGAAGGCCTCTGCGTCTTTATAGCCAGCCAAGTGCAAAGCAAGTGCGAA
TGGAAGGTAGAAGGAGTAATAGGCAGTCTTATTTTCGACAATTGCTTTGT
AGTTTTCCATTGTGAATTCCGAGACACAGCGGTTCGAGTTCAGTTGGTCC
AACGATTGTCCGCAGGTAGTGATGTATGTGATTTCGTGGAAGAGCTCCAT
TAGGGCGACATAGCAGTCCAAGTGGCTGAAGTGCTTCTTGAGAATGGCAT
ACATGGCGTTTTCAATCATAAGAGCATCGTTAATGGCAGTCAGGCCCACG
TTCTCCACCTTGTGCCAGCAGGGTTGGCCGCGTCTGGTGGTGCTGTTGTC
CATCACATCGTCTGAGATGATGAAAAAACTTTGGAGCATTTCCACGCACC
AGCCCAGATACTGGGCGAGCTTTATGTTCTCCGGCGTAAGATCCTGGGTG
GGCACTAGATTCTTATACGTGAGCACGGTGAGGATGCCGCGGTTCTTCTT
GCCCCTGGGCACATTGTACTGGAGGACTTGGGCGAACCATTTGGCTGCGT
CGCTGCAATTGTATG

BO04106.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12389-PA 1260 Fpps-RA 311..1257 965..19 4610 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
Fpps-RA 1465 CG12389-RA 397..1343 965..19 4660 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11306159..11306521 425..787 1815 100 Plus
2R 25286936 2R 11305872..11306099 198..425 1095 98.7 Plus
2R 25286936 2R 11305633..11305813 19..199 890 99.4 Plus
2R 25286936 2R 11306580..11306758 787..965 880 99.4 Plus
Blast to na_te.dros performed on 2015-02-12 01:01:54 has no hits.

BO04106.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:36 Download gff for BO04106.3prime
Subject Subject Range Query Range Percent Splice Strand
Fpps-PA 311..1260 15..965 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:41 Download gff for BO04106.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12389-PA 311..1260 15..965 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:36:56 Download gff for BO04106.3prime
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 397..1349 11..965 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:15 Download gff for BO04106.3prime
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 397..1349 11..965 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:54:15 Download gff for BO04106.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11305627..11305811 11..197 97 <- Plus
2R 11305872..11306098 198..424 98 <- Plus
2R 11306159..11306520 425..786 100 <- Plus
2R 11306580..11306758 787..965 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:36:56 Download gff for BO04106.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7193132..7193316 11..197 97 <- Plus
arm_2R 7193377..7193603 198..424 98 <- Plus
arm_2R 7193664..7194025 425..786 100 <- Plus
arm_2R 7194085..7194263 787..965 99   Plus

BO04106.5prime Sequence

837 bp (809 high quality bases) assembled on 2005-12-01

> BO04106.5prime
GAAGTTATCAGTCGACATGTTTAAACTGGCCCGTATGCTCCTGCCGCAGC
AGCGGATCCTGGCCAGCCCGCTGCGCCTGCAACGCCTGATCTCTACCAGC
GACGAGGTCAACGCAGAGCCCATCATCAAGTCCATGGACACCATTGGCGG
CCTCCCCACCGAACTGGTCAACGAACAGAAGCTGAAGAAGACTAGCAGAA
CCTTATCGACGCTCCAAAATCACTCGGTTCCCATTGCCGCTCGCGTCACG
GTGTCGAAAGATGAGAGTCGCGACTTTATGGCCGTGTTCCCAGATCTTGT
GCGTGACATCACCACCGTGACGAAGGCATACAATTGCAGCGACGCAGCCA
AATGGTTCGCCCAAGTCCTCCAGTACAATGTGCCCAGGGGCAAGAAGAAC
CGCGGCATCCTCACCGTGCTCACGTATAAGAATCTAGTGCCCACCCAGGA
TCTTACGCCGGAGAACATAAAGCTCGCCCAGTATCTGGGCTGGTGCGTGG
AAATGCTCCAAAGTTTTTTCATCATCTCAGACGATGTGATGGACAACAGC
ACCACCAGACGCGGCCAACCCTGCTGGCACAAGGTGGAGAACGTGGGCCT
GACTGCCATTAACGATGCTCTTATGATTGAAAACGCCATGTATGCCATTC
TCAAGAAGCACTTCAGCCACTTGGACTGCTATGTCGCCCTAATGGAGCTC
TTCCACGAAATCACATACATCACTACCTGCGGACAATCGTTGGACCAACT
GAACTCGAACCGCTGTGTCTCGGAATTCACAATGGAAAACTACAAAGCAA
TTGTCGAAAATAAGACTGCCTATTACTCCTTCTACCT

BO04106.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12389-PA 1260 Fpps-RA 1..821 17..837 4080 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
Fpps-RA 1465 CG12389-RA 87..907 17..837 4090 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11306189..11306521 837..505 1665 100 Minus
2R 25286936 2R 11306580..11306794 505..291 1060 99.5 Minus
2R 25286936 2R 11307261..11307442 198..17 910 100 Minus
2R 25286936 2R 11306865..11306962 293..196 490 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:21:55 has no hits.

BO04106.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:37 Download gff for BO04106.5prime
Subject Subject Range Query Range Percent Splice Strand
Fpps-PA 1..821 17..837 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:42 Download gff for BO04106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12389-PA 1..821 17..837 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:46:25 Download gff for BO04106.5prime
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 87..907 17..837 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:48:38 Download gff for BO04106.5prime
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 87..907 17..837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:48:38 Download gff for BO04106.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11306189..11306520 506..837 100 <- Minus
2R 11306580..11306791 294..505 99 <- Minus
2R 11306865..11306959 199..293 100 <- Minus
2R 11307261..11307442 17..198 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:46:25 Download gff for BO04106.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7193694..7194025 506..837 100 <- Minus
arm_2R 7194085..7194296 294..505 99 <- Minus
arm_2R 7194370..7194464 199..293 100 <- Minus
arm_2R 7194766..7194947 17..198 100   Minus

BO04106.complete Sequence

1291 bp (1291 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629644

> BO04106.complete
GAAGTTATCAGTCGACATGTTTAAACTGGCCCGTATGCTCCTGCCGCAGC
AGCGGATCCTGGCCAGCCCGCTGCGCCTGCAACGCCTGATCTCTACCAGC
GACGAGGTCAACGCAGAGCCCATCATCAAGTCCATGGACACCATTGGCGG
CCTCCCCACCGAACTGGTCAACGAACAGAAGCTGAAGAAGACTAGCAGAA
CCTTATCGACGCTCCAAAATCACTCGGTTCCCATTGCCGCTCGCGTCACG
GTGTCGAAAGATGAGAGTCGCGACTTTATGGCCGTGTTCCCAGATCTTGT
GCGTGACATCACCACCGTGACGAAGGCATACAATTGCAGCGACGCAGCCA
AATGGTTCGCCCAAGTCCTCCAGTACAATGTGCCCAGGGGCAAGAAGAAC
CGCGGCATCCTCACCGTGCTCACGTATAAGAATCTAGTGCCCACCCAGGA
TCTTACGCCGGAGAACATAAAGCTCGCCCAGTATCTGGGCTGGTGCGTGG
AAATGCTCCAAAGTTTTTTCATCATCTCAGACGATGTGATGGACAACAGC
ACCACCAGACGCGGCCAACCCTGCTGGCACAAGGTGGAGAACGTGGGCCT
GACTGCCATTAACGATGCTCTTATGATTGAAAACGCCATGTATGCCATTC
TCAAGAAGCACTTCAGCCACTTGGACTGCTATGTCGCCCTAATGGAGCTC
TTCCACGAAATCACATACATCACTACCTGCGGACAATCGTTGGACCAACT
GAACTCGAACCGCTGTGTCTCGGAATTCACAATGGAAAACTACAAAGCAA
TTGTCGAAAATAAGACTGCCTATTACTCCTTCTACCTTCCATTCGCACTT
GCTTTGCACTTGGCTGGCTATAAAGACGCAGAGGCCTTCCGTCAATCGAA
GACCATTCTCCTAGAAATGGGCAACTTTTTCCAGGTTCAAGATGATTTTC
TCGACTGCTTCGGTAATCCGGAAGTGACTGGTAAAATTGGAACCGACATT
CAGGACAACAAGTGCTCGTGGCTGGCTGTGGTGGCTATGCAGCGAGCCAA
TGTCGAGCAAAAGCAAATCATGGTCGATTGCTATGGCAAAGAAGAACCAG
CTAAAGTGGAGAGAGTGAAAGAACTGTACAAGGAACTTGGACTGCCATCC
ACCTATGCCATTTTCGAGGAGGAATCCTACAACATGATTAAAACGCACAT
ACAACAAACCTCACGCGGGGTGCCTCACCAGACCTTCCTGCAAATACTCA
ACAAAATCTACCAACGTGACTCCGCAAGCTTTCTAGACCAT

BO04106.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
Fpps-RA 1260 CG12389-PA 1..1257 17..1273 6210 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
Fpps-RA 1465 CG12389-RA 87..1343 17..1273 6210 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11306159..11306521 867..505 1815 100 Minus
2R 25286936 2R 11305872..11306099 1094..867 1095 98.7 Minus
2R 25286936 2R 11306580..11306794 505..291 1060 99.5 Minus
2R 25286936 2R 11307261..11307442 198..17 910 100 Minus
2R 25286936 2R 11305633..11305813 1273..1093 890 99.4 Minus
2R 25286936 2R 11306865..11306962 293..196 490 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:34:51 has no hits.

BO04106.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:37 Download gff for BO04106.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 1..1260 17..1277 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:36 Download gff for BO04106.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 124..1386 17..1281 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:56 Download gff for BO04106.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 93..1343 23..1275 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:38 Download gff for BO04106.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 124..1386 17..1281 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:31 Download gff for BO04106.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 93..1343 23..1275 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:31 Download gff for BO04106.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11305631..11305811 1095..1275 98 <- Minus
2R 11305872..11306098 868..1094 98 <- Minus
2R 11306159..11306520 506..867 100 <- Minus
2R 11306580..11306791 294..505 99 <- Minus
2R 11306865..11306959 199..293 100 <- Minus
2R 11307261..11307436 23..198 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:56 Download gff for BO04106.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7193136..7193316 1095..1275 98 <- Minus
arm_2R 7193377..7193603 868..1094 98 <- Minus
arm_2R 7193664..7194025 506..867 100 <- Minus
arm_2R 7194085..7194296 294..505 99 <- Minus
arm_2R 7194370..7194464 199..293 100 <- Minus
arm_2R 7194766..7194941 23..198 100   Minus

BO04106.pep Sequence

Translation from 16 to 1291

> BO04106.pep
MFKLARMLLPQQRILASPLRLQRLISTSDEVNAEPIIKSMDTIGGLPTEL
VNEQKLKKTSRTLSTLQNHSVPIAARVTVSKDESRDFMAVFPDLVRDITT
VTKAYNCSDAAKWFAQVLQYNVPRGKKNRGILTVLTYKNLVPTQDLTPEN
IKLAQYLGWCVEMLQSFFIISDDVMDNSTTRRGQPCWHKVENVGLTAIND
ALMIENAMYAILKKHFSHLDCYVALMELFHEITYITTCGQSLDQLNSNRC
VSEFTMENYKAIVENKTAYYSFYLPFALALHLAGYKDAEAFRQSKTILLE
MGNFFQVQDDFLDCFGNPEVTGKIGTDIQDNKCSWLAVVAMQRANVEQKQ
IMVDCYGKEEPAKVERVKELYKELGLPSTYAIFEEESYNMIKTHIQQTSR
GVPHQTFLQILNKIYQRDSASFLDH

BO04106.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
Fpps-PA 419 CG12389-PA 1..419 1..419 2173 100 Plus