Clone BO04108 Report

Search the DGRC for BO04108

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:41
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptNeos-RA
Protein status:BO04108.pep: validated full length
Sequenced Size:1147

Clone Sequence Records

BO04108.3prime Sequence

933 bp (833 high quality bases) assembled on 2005-12-01

> BO04108.3prime
ATGGTCTAGAAAGCTTGCTAAATACTCGGCTAAAATCTGTCTGAGATCCG
AGTTGTAAACACTTTCCAGGGCCGCCAACACTCGATCGTCAGCAAGTAGC
TCCATTAGCCTTCTGTCCTCCTTGACTGCCTCGAAAGTGGGATACATGAG
CTCGCTGGTGACATCGGTTACTGCCGGCTTGTTCATGATGCTAAGAATCT
TCTTCTGCAGCTCGATCTCTGGATCGGGAGCTTTTAGCTTGGCCAGAGCA
TTGGCCTCGCCCACCTCTCGCTTCAGTTGCTCCTCGCGTTCGCCTTCGAG
GTACTTAAGAATCACCTCGTACTGCGACGCGGTCAATGGATGATTGTCTG
CCAGCCTTTCCAGCAGCCCCTGCATTTCCTGGGGATGTCGTCGCTGTCCC
TTGTGTATGGATGTTGACGGCGGTAAGACGACAGCGTCGCGCTGTTTTTT
GAGCCTAAAATCGGTGGAGATCAGGGTGATGGCGTCCTCCAGCGGCATGT
TGCGATGCTCAGCGGGTACGCCATACAAAATGTTTACTGTGATGCTGTTG
TGTTCCTCGTGCTGCGGCGTGACCAATACCGCATACAAGCAGCCGCGCGA
AGAGATGTTGGCCAGGACCTTGCCTAGCAAGACGTCCTCGTTGGGAAAGA
GTACATCCACGCGCAGACTGGAATTCTTTAGCCGCTCCTCAATGTATTCT
GCGTATTTGGTATTCTCGCGATTTTGGACTATGATCTCGCAATCATTGAT
GAGGGGTTGACCTGCTGCCGCTGCCGCCGCTGACATCACAAGTCCACCCT
GAACTGTCACCTGGCCTCCTTGATTTGAATTTCTTTTGGCGATAGCATTG
GCCCGCTTCGATTTTATGCTGGCGTTGCGTACGGTGAGCATGTTTTGCTT
AAAAGTGGACTTGTGCAGGGCGGAGGCGGCTTT

BO04108.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8614-PA 1116 Neos-RA 199..1113 933..19 4500 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
Neos-RB 1260 CG8614-RB 257..1171 933..19 4530 99.7 Minus
Neos-RA 1449 CG8614-RA 446..1360 933..19 4530 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7242360..7243050 709..19 3455 100 Minus
3L 28110227 3L 7242073..7242296 933..710 1075 98.7 Minus
Blast to na_te.dros performed on 2015-02-11 23:08:27 has no hits.

BO04108.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:39 Download gff for BO04108.3prime
Subject Subject Range Query Range Percent Splice Strand
Neos-PA 199..1116 18..933 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:46 Download gff for BO04108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8614-PA 199..1116 18..933 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:18 Download gff for BO04108.3prime
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 446..1360 19..933 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:33:37 Download gff for BO04108.3prime
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 446..1360 19..933 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:33:37 Download gff for BO04108.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7242073..7242296 710..933 98 -> Minus
3L 7242360..7243050 19..709 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:18 Download gff for BO04108.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7235173..7235396 710..933 98 -> Minus
arm_3L 7235460..7236150 19..709 100   Minus

BO04108.5prime Sequence

838 bp (797 high quality bases) assembled on 2005-12-01

> BO04108.5prime
GAAGTTATCAGTCGACATGTCTGATCCAGGAAGCGCCGGCTACAACATAA
CCAAGGATCCGGCCCTGGCAAAGAGTCGAATCTTCTTGGGCAACCTGCCG
GTTTGCACGCGCGAGGAGCTGGTGAGCATTTGCCAGCCATATGGCAAAGT
GCTCGGTTCGATGGTCCAGAAGAACTACGGATTCGTGCAGTTTGAAACGG
AGGAGCTGGCCAATAAAGCCGCCTCCGCCCTGCACAAGTCCACTTTTAAG
CAAAACATGCTCACCGTACGCAACGCCAGCATTAAATCGAAGGCGGCCAA
TGCTATCGCCAAAAGAAATTCAAATCAAGGAGGCCAGGTGACAGTTCAGG
GTGGACTTGTGATGTCAGCGGCGGCAGCGGCAGCAGGTCAACCCCTCATC
AATGATTGCGAGATCATAGTCCAAAATCGCGAGAATACCAAATACGCAGA
ATACATTGAGGAGCGGCTAAAGAATTCCAGTCTGCGCGTGGATGTACTCT
TTCCCAACGAGGACGTCTTGCTAGGCAAGGTCCTGGCCAACATCTCTTCG
CGCGGCTGCTTGTATGCGGTATTGGTCACGCCGCAGCACGAGGAACACAA
CAGCATCACAGTAAACATTTTGTATGGCGTACCCGCTGAGCATCGCAACA
TGCCGCTGGAGGACGCCATCACCCTGATCTCCACCGATTTTAGGCTCAAA
AAACAGCGCGACGCTGTCGTCTTACCGCCGTCAACATCCATACACAAGGG
ACAGCGACGACATCCCCAGGAAATGCAGGGGCTGCTGGAAAGGCTGGCAG
ACAATCATCCATTGACCGCGTCGCAGTACGAGGTGATT

BO04108.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8614-PA 1116 Neos-RA 1..822 17..838 4110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
Neos-RB 1260 CG8614-RB 59..880 17..838 4110 100 Plus
Neos-RA 1449 CG8614-RA 248..1069 17..838 4110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7241875..7242296 17..438 2110 100 Plus
3L 28110227 3L 7242360..7242759 439..838 2000 100 Plus
Blast to na_te.dros performed 2015-02-11 02:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 1768..1832 258..323 111 65.2 Plus

BO04108.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:40 Download gff for BO04108.5prime
Subject Subject Range Query Range Percent Splice Strand
Neos-PA 1..822 17..838 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:47 Download gff for BO04108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8614-PA 1..822 17..838 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:46:27 Download gff for BO04108.5prime
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 245..1069 12..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:50:02 Download gff for BO04108.5prime
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 245..1069 12..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:50:02 Download gff for BO04108.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7241872..7242296 12..438 99 -> Plus
3L 7242360..7242759 439..838 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:46:27 Download gff for BO04108.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7234972..7235396 12..438 99 -> Plus
arm_3L 7235460..7235859 439..838 100   Plus

BO04108.complete Sequence

1147 bp (1147 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629645

> BO04108.complete
GAAGTTATCAGTCGACATGTCTGATCCAGGAAGCGCCGGCTACAACATAA
CCAAGGATCCGGCCCTGGCAAAGAGTCGAATCTTCTTGGGCAACCTGCCG
GTTTGCACGCGCGAGGAGCTGGTGAGCATTTGCCAGCCATATGGCAAAGT
GCTCGGTTCGATGGTCCAGAAGAACTACGGATTCGTGCAGTTTGAAACGG
AGGAGCTGGCCAATAAAGCCGCCTCCGCCCTGCACAAGTCCACTTTTAAG
CAAAACATGCTCACCGTACGCAACGCCAGCATTAAATCGAAGGCGGCCAA
TGCTATCGCCAAAAGAAATTCAAATCAAGGAGGCCAGGTGACAGTTCAGG
GTGGACTTGTGATGTCAGCGGCGGCAGCGGCAGCAGGTCAACCCCTCATC
AATGATTGCGAGATCATAGTCCAAAATCGCGAGAATACCAAATACGCAGA
ATACATTGAGGAGCGGCTAAAGAATTCCAGTCTGCGCGTGGATGTACTCT
TTCCCAACGAGGACGTCTTGCTAGGCAAGGTCCTGGCCAACATCTCTTCG
CGCGGCTGCTTGTATGCGGTATTGGTCACGCCGCAGCACGAGGAACACAA
CAGCATCACAGTAAACATTTTGTATGGCGTACCCGCTGAGCATCGCAACA
TGCCGCTGGAGGACGCCATCACCCTGATCTCCACCGATTTTAGGCTCAAA
AAACAGCGCGACGCTGTCGTCTTACCGCCGTCAACATCCATACACAAGGG
ACAGCGACGACATCCCCAGGAAATGCAGGGGCTGCTGGAAAGGCTGGCAG
ACAATCATCCATTGACCGCGTCGCAGTACGAGGTGATTCTTAAGTACCTC
GAAGGCGAACGCGAGGAGCAACTGAAGCGAGAGGTGGGCGAGGCCAATGC
TCTGGCCAAGCTAAAAGCTCCCGATCCAGAGATCGAGCTGCAGAAGAAGA
TTCTTAGCATCATGAACAAGCCGGCAGTAACCGATGTCACCAGCGAGCTC
ATGTATCCCACTTTCGAGGCAGTCAAGGAGGACAGAAGGCTAATGGAGCT
ACTTGCTGACGATCGAGTGTTGGCGGCCCTGGAAAGTGTTTACAACTCGG
ATCTCAGACAGATTTTAGCCGAGTATTTAGCAAGCTTTCTAGACCAT

BO04108.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Neos-RB 1116 CG8614-PB 1..1113 17..1129 5565 100 Plus
Neos-RA 1116 CG8614-PA 1..1113 17..1129 5565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
Neos-RB 1260 CG8614-RB 59..1171 17..1129 5565 100 Plus
Neos-RA 1449 CG8614-RA 248..1360 17..1129 5565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7242360..7243050 439..1129 3455 100 Plus
3L 28110227 3L 7241875..7242296 17..438 2110 100 Plus
Blast to na_te.dros performed 2014-11-26 16:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 1768..1832 258..323 111 65.2 Plus

BO04108.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:39 Download gff for BO04108.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 1..1116 17..1130 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:37 Download gff for BO04108.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 181..1296 12..1129 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:44 Download gff for BO04108.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 248..1360 17..1131 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:39 Download gff for BO04108.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 181..1296 12..1129 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:30 Download gff for BO04108.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 248..1360 17..1131 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:30 Download gff for BO04108.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7241875..7242296 17..438 100 -> Plus
3L 7242360..7243050 439..1131 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:44 Download gff for BO04108.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7234975..7235396 17..438 100 -> Plus
arm_3L 7235460..7236150 439..1131 99   Plus

BO04108.pep Sequence

Translation from 16 to 1147

> BO04108.pep
MSDPGSAGYNITKDPALAKSRIFLGNLPVCTREELVSICQPYGKVLGSMV
QKNYGFVQFETEELANKAASALHKSTFKQNMLTVRNASIKSKAANAIAKR
NSNQGGQVTVQGGLVMSAAAAAAGQPLINDCEIIVQNRENTKYAEYIEER
LKNSSLRVDVLFPNEDVLLGKVLANISSRGCLYAVLVTPQHEEHNSITVN
ILYGVPAEHRNMPLEDAITLISTDFRLKKQRDAVVLPPSTSIHKGQRRHP
QEMQGLLERLADNHPLTASQYEVILKYLEGEREEQLKREVGEANALAKLK
APDPEIELQKKILSIMNKPAVTDVTSELMYPTFEAVKEDRRLMELLADDR
VLAALESVYNSDLRQILAEYLASFLDH

BO04108.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Neos-PB 371 CG8614-PB 1..371 1..371 1862 100 Plus
Neos-PA 371 CG8614-PA 1..371 1..371 1862 100 Plus
fz3-PB 646 CG16785-PB 1..95 1..95 230 49.5 Plus
CG14628-PA 141 CG14628-PA 1..97 1..97 217 45.4 Plus
CG18823-PA 106 CG18823-PA 9..82 15..88 188 48.6 Plus