Clone BO04110 Report

Search the DGRC for BO04110

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:41
Well:10
Vector:pDNR-Dual
Associated Gene/Transcriptsec13-RA
Protein status:BO04110.pep: validated full length
Sequenced Size:1102

Clone Sequence Records

BO04110.3prime Sequence

905 bp (810 high quality bases) assembled on 2005-12-01

> BO04110.3prime
ATGGTCTAGAAAGCTTGCGTTGGAGAGCTGCGAGTTGGACAGGTTCGAGC
TATGCTCCGAATCGGAGGAAGGACCTGGATGCGATGGCGCCTGTTGTTGG
TGCTGTTGTAGCGCCTGCTGCTGCTGGGAGTGGGAATGCGGAAGGTGCGA
GGGCTGCTTCGACTGGATGGCCGTACCCGACTCGTAGTTGATGCGGATCC
ATTGGCCCTCCGTGTTCTCCTTCCACAATGTGACATTGTTGTCCCCACCG
GTGACGGCAAGAATGTTGCCGGTGGTTGACCACGAGATGCTCCACACGGC
ATCGTCGAATGTGTGCAGCACAGTCGAGGTCCACTCGGATAGATCTGCGT
TGCTGCTCCACACAATCACATGGCGATCCTGCGAAGCCGTGGCAATCTGC
GAGCGGGGCAATCCGATCGACGGCGCCCAGGCCACGTCGCGCACCCAATC
CGAGTGCGCCTCCAGTCGGTGCTCCTCCACCCAGCGGTCGTTGTCCTCCC
GCCAAATCTTCACTAAATTATCGCAACCACCGCTCACTAGGCGCTTTACG
GCCGCCGAACGCGAAGTTACGCGCTGGTCAAATGCTGGATCTGGTGCCTG
GGCGGGGCACCACGAGATGGCATTCACTCCGATCGTGTGCGCATTCGGTA
TCTTCTTGGCATCCCACACACCGTACTCCGTGTTGCAGGTGAGCACCGAT
ACCGAGCCATCCGAACTGGCGCAGGCCAACACCAATCCGTACTCGGATGG
CGCGAAGTCCACCGAGTTTACCGAGGAGTCGTGGTTGCTGTATTCGTAGA
GCTTAGTCCAATCCCGGGGCGTTGTGGACTTCCAGACGATCACCTTGCGG
TCGTAGGAGCACGATGCCAGTATGTTGCCAAACTTGGGATGTGCCCAGGC
CACCT

BO04110.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6773-PA 1071 sec13-RA 182..1068 905..19 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Sec13-RB 1809 CG6773-RB 570..1456 905..19 4435 100 Minus
Sec13-RA 1343 CG6773-RA 285..1171 905..19 4435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23357398..23358178 799..19 3905 100 Minus
3R 32079331 3R 23356847..23356952 905..800 530 100 Minus
Blast to na_te.dros performed 2015-02-13 05:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6803 158..78 135 63 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6815 165..87 134 63.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2384 165..91 132 64 Minus
roo 9092 roo DM_ROO 9092bp 1043..1123 164..85 132 64.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2597..2665 160..92 129 65.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6782 126..78 128 73.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2499..2541 126..84 125 76.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2396 126..76 120 70.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6778..6843 160..92 113 65.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6836 205..87 112 58.1 Minus

BO04110.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:41 Download gff for BO04110.3prime
Subject Subject Range Query Range Percent Splice Strand
sec13-PA 182..1071 16..905 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:48 Download gff for BO04110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6773-PA 182..1071 16..905 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:52:58 Download gff for BO04110.3prime
Subject Subject Range Query Range Percent Splice Strand
Sec13-RA 285..1176 13..905 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:28 Download gff for BO04110.3prime
Subject Subject Range Query Range Percent Splice Strand
Sec13-RA 285..1176 13..905 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:28 Download gff for BO04110.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23356847..23356952 800..905 100 -> Minus
3R 23357398..23358183 13..799 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:52:58 Download gff for BO04110.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19182569..19182674 800..905 100 -> Minus
arm_3R 19183120..19183905 13..799 99   Minus

BO04110.5prime Sequence

851 bp (775 high quality bases) assembled on 2005-12-01

> BO04110.5prime
GAAGTTATCAGTCGACATGGTGAGCCTGCTGCAAGAGATCGACACCGAGC
ACGAGGACATGGTCCACCACGCAGCGCTGGACTTCTACGGCCTACTGTTG
GCCACCTGCTCCTCGGACGGCAGCGTCCGCATCTTTCACTCGCGCAAAAA
CAATAAGGCGCTCGCCGAGCTCAAGGGACACCAGGGACCAGTGTGGCAGG
TGGCCTGGGCACATCCCAAGTTTGGCAACATACTGGCATCGTGCTCCTAC
GACCGCAAGGTGATCGTCTGGAAGTCCACAACGCCCCGGGATTGGACTAA
GCTCTACGAATACAGCAACCACGACTCCTCGGTAAACTCGGTGGACTTCG
CGCCATCCGAGTACGGATTGGTGTTGGCCTGCGCCAGTTCGGATGGCTCG
GTATCGGTGCTCACCTGCAACACGGAGTACGGTGTGTGGGATGCCAAGAA
GATACCGAATGCGCACACGATCGGAGTGAATGCCATCTCGTGGTGCCCCG
CCCAGGCACCAGATCCAGCATTTGACCAGCGCGTAACTTCGCGTTCGGCG
GCCGTAAAGCGCCTAGTGAGCGGTGGTTGCGATAATTTAGTGAAGATTTG
GCGGGAGGACAACGACCGCTGGGTGGAGGAGCACCGACTGGAGGCGCACT
CGGATTGGGTGCGCGACGTGGCCTGGGCGCCGTCGATCGGATTGCCCCGC
TCGCAGATTGCCACGGCTTCGCAGGATCGCCATGTGATTGTGTGGAGCAG
CAACGCAGATCTATCCGAGTGGACCTCGACTGTGCTGCACACATTCGACG
ATGCCGTGTGGAGCATCTCGTGGTCAACCACCGGCAACATTCTTGCCGTC
A

BO04110.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6773-PA 1071 sec13-RA 1..835 17..851 4175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
Sec13-RB 1809 CG6773-RB 389..1223 17..851 4175 100 Plus
Sec13-RA 1343 CG6773-RA 104..938 17..851 4175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23357398..23357945 304..851 2740 100 Plus
3R 32079331 3R 23356666..23356952 17..303 1435 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:28:53 has no hits.

BO04110.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:42 Download gff for BO04110.5prime
Subject Subject Range Query Range Percent Splice Strand
sec13-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:50 Download gff for BO04110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6773-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:00 Download gff for BO04110.5prime
Subject Subject Range Query Range Percent Splice Strand
Sec13-RA 93..937 5..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:52 Download gff for BO04110.5prime
Subject Subject Range Query Range Percent Splice Strand
Sec13-RA 93..937 5..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:52 Download gff for BO04110.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23356655..23356952 5..303 98 -> Plus
3R 23357398..23357944 304..850 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:00 Download gff for BO04110.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19182377..19182674 5..303 98 -> Plus
arm_3R 19183120..19183666 304..850 100   Plus

BO04110.complete Sequence

1102 bp (1102 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629646

> BO04110.complete
GAAGTTATCAGTCGACATGGTGAGCCTGCTGCAAGAGATCGACACCGAGC
ACGAGGACATGGTCCACCACGCAGCGCTGGACTTCTACGGCCTACTGTTG
GCCACCTGCTCCTCGGACGGCAGCGTCCGCATCTTTCACTCGCGCAAAAA
CAATAAGGCGCTCGCCGAGCTCAAGGGACACCAGGGACCAGTGTGGCAGG
TGGCCTGGGCACATCCCAAGTTTGGCAACATACTGGCATCGTGCTCCTAC
GACCGCAAGGTGATCGTCTGGAAGTCCACAACGCCCCGGGATTGGACTAA
GCTCTACGAATACAGCAACCACGACTCCTCGGTAAACTCGGTGGACTTCG
CGCCATCCGAGTACGGATTGGTGTTGGCCTGCGCCAGTTCGGATGGCTCG
GTATCGGTGCTCACCTGCAACACGGAGTACGGTGTGTGGGATGCCAAGAA
GATACCGAATGCGCACACGATCGGAGTGAATGCCATCTCGTGGTGCCCCG
CCCAGGCACCAGATCCAGCATTTGACCAGCGCGTAACTTCGCGTTCGGCG
GCCGTAAAGCGCCTAGTGAGCGGTGGTTGCGATAATTTAGTGAAGATTTG
GCGGGAGGACAACGACCGCTGGGTGGAGGAGCACCGACTGGAGGCGCACT
CGGATTGGGTGCGCGACGTGGCCTGGGCGCCGTCGATCGGATTGCCCCGC
TCGCAGATTGCCACGGCTTCGCAGGATCGCCATGTGATTGTGTGGAGCAG
CAACGCAGATCTATCCGAGTGGACCTCGACTGTGCTGCACACATTCGACG
ATGCCGTGTGGAGCATCTCGTGGTCAACCACCGGCAACATTCTTGCCGTC
ACCGGTGGGGACAACAATGTCACATTGTGGAAGGAGAACACGGAGGGCCA
ATGGATCCGCATCAACTACGAGTCGGGTACGGCCATCCAGTCGAAGCAGC
CCTCGCACCTTCCGCATTCCCACTCCCAGCAGCAGCAGGCGCTACAACAG
CACCAACAACAGGCGCCATCGCATCCAGGTCCTTCCTCCGATTCGGAGCA
TAGCTCGAACCTGTCCAACTCGCAGCTCTCCAACGCAAGCTTTCTAGACC
AT

BO04110.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
Sec13-RB 1071 CG6773-PB 1..1068 17..1084 5340 100 Plus
Sec13-RA 1071 CG6773-PA 1..1068 17..1084 5340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
Sec13-RB 1809 CG6773-RB 389..1456 17..1084 5340 100 Plus
Sec13-RA 1343 CG6773-RA 104..1171 17..1084 5340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23357398..23358178 304..1084 3905 100 Plus
3R 32079331 3R 23356666..23356952 17..303 1435 100 Plus
Blast to na_te.dros performed 2014-11-27 23:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6803 945..1025 135 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6815 938..1016 134 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2384 938..1012 132 64 Plus
roo 9092 roo DM_ROO 9092bp 1043..1123 939..1018 132 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2597..2665 943..1011 129 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6782 977..1025 128 73.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2499..2541 977..1019 125 76.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2396 977..1027 120 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6778..6843 943..1011 113 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6836 898..1016 112 58.1 Plus

BO04110.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:40 Download gff for BO04110.complete
Subject Subject Range Query Range Percent Splice Strand
sec13-RA 1..1071 17..1087 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:39 Download gff for BO04110.complete
Subject Subject Range Query Range Percent Splice Strand
sec13-RA 88..1171 5..1090 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:30 Download gff for BO04110.complete
Subject Subject Range Query Range Percent Splice Strand
Sec13-RA 104..1171 17..1086 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:40 Download gff for BO04110.complete
Subject Subject Range Query Range Percent Splice Strand
sec13-RA 88..1171 5..1090 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:40 Download gff for BO04110.complete
Subject Subject Range Query Range Percent Splice Strand
Sec13-RA 104..1171 17..1086 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:40 Download gff for BO04110.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23356666..23356952 17..303 100 -> Plus
3R 23357398..23358178 304..1086 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:30 Download gff for BO04110.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19182388..19182674 17..303 100 -> Plus
arm_3R 19183120..19183900 304..1086 99   Plus

BO04110.pep Sequence

Translation from 16 to 1102

> BO04110.pep
MVSLLQEIDTEHEDMVHHAALDFYGLLLATCSSDGSVRIFHSRKNNKALA
ELKGHQGPVWQVAWAHPKFGNILASCSYDRKVIVWKSTTPRDWTKLYEYS
NHDSSVNSVDFAPSEYGLVLACASSDGSVSVLTCNTEYGVWDAKKIPNAH
TIGVNAISWCPAQAPDPAFDQRVTSRSAAVKRLVSGGCDNLVKIWREDND
RWVEEHRLEAHSDWVRDVAWAPSIGLPRSQIATASQDRHVIVWSSNADLS
EWTSTVLHTFDDAVWSISWSTTGNILAVTGGDNNVTLWKENTEGQWIRIN
YESGTAIQSKQPSHLPHSHSQQQQALQQHQQQAPSHPGPSSDSEHSSNLS
NSQLSNASFLDH

BO04110.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
Sec13-PB 356 CG6773-PB 1..356 1..356 1920 100 Plus
Sec13-PA 356 CG6773-PA 1..356 1..356 1920 100 Plus
Nup44A-PA 354 CG8722-PA 4..307 5..296 357 27.7 Plus
Nup44A-PC 354 CG8722-PC 4..307 5..296 357 27.7 Plus
Nup44A-PB 354 CG8722-PB 4..307 5..296 357 27.7 Plus