Clone Sequence Records
BO04110.3prime Sequence
905 bp (810 high quality bases) assembled on 2005-12-01
> BO04110.3prime
ATGGTCTAGAAAGCTTGCGTTGGAGAGCTGCGAGTTGGACAGGTTCGAGC
TATGCTCCGAATCGGAGGAAGGACCTGGATGCGATGGCGCCTGTTGTTGG
TGCTGTTGTAGCGCCTGCTGCTGCTGGGAGTGGGAATGCGGAAGGTGCGA
GGGCTGCTTCGACTGGATGGCCGTACCCGACTCGTAGTTGATGCGGATCC
ATTGGCCCTCCGTGTTCTCCTTCCACAATGTGACATTGTTGTCCCCACCG
GTGACGGCAAGAATGTTGCCGGTGGTTGACCACGAGATGCTCCACACGGC
ATCGTCGAATGTGTGCAGCACAGTCGAGGTCCACTCGGATAGATCTGCGT
TGCTGCTCCACACAATCACATGGCGATCCTGCGAAGCCGTGGCAATCTGC
GAGCGGGGCAATCCGATCGACGGCGCCCAGGCCACGTCGCGCACCCAATC
CGAGTGCGCCTCCAGTCGGTGCTCCTCCACCCAGCGGTCGTTGTCCTCCC
GCCAAATCTTCACTAAATTATCGCAACCACCGCTCACTAGGCGCTTTACG
GCCGCCGAACGCGAAGTTACGCGCTGGTCAAATGCTGGATCTGGTGCCTG
GGCGGGGCACCACGAGATGGCATTCACTCCGATCGTGTGCGCATTCGGTA
TCTTCTTGGCATCCCACACACCGTACTCCGTGTTGCAGGTGAGCACCGAT
ACCGAGCCATCCGAACTGGCGCAGGCCAACACCAATCCGTACTCGGATGG
CGCGAAGTCCACCGAGTTTACCGAGGAGTCGTGGTTGCTGTATTCGTAGA
GCTTAGTCCAATCCCGGGGCGTTGTGGACTTCCAGACGATCACCTTGCGG
TCGTAGGAGCACGATGCCAGTATGTTGCCAAACTTGGGATGTGCCCAGGC
CACCT
BO04110.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6773-PA | 1071 | sec13-RA | 182..1068 | 905..19 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec13-RB | 1809 | CG6773-RB | 570..1456 | 905..19 | 4435 | 100 | Minus |
Sec13-RA | 1343 | CG6773-RA | 285..1171 | 905..19 | 4435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23357398..23358178 | 799..19 | 3905 | 100 | Minus |
3R | 32079331 | 3R | 23356847..23356952 | 905..800 | 530 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 05:28:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6803 | 158..78 | 135 | 63 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6815 | 165..87 | 134 | 63.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2384 | 165..91 | 132 | 64 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1043..1123 | 164..85 | 132 | 64.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2665 | 160..92 | 129 | 65.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6782 | 126..78 | 128 | 73.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2499..2541 | 126..84 | 125 | 76.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2396 | 126..76 | 120 | 70.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6843 | 160..92 | 113 | 65.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6836 | 205..87 | 112 | 58.1 | Minus |
BO04110.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:41 Download gff for
BO04110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sec13-PA | 182..1071 | 16..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:48 Download gff for
BO04110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6773-PA | 182..1071 | 16..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:52:58 Download gff for
BO04110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec13-RA | 285..1176 | 13..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:28 Download gff for
BO04110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec13-RA | 285..1176 | 13..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:28 Download gff for
BO04110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23356847..23356952 | 800..905 | 100 | -> | Minus |
3R | 23357398..23358183 | 13..799 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:52:58 Download gff for
BO04110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19182569..19182674 | 800..905 | 100 | -> | Minus |
arm_3R | 19183120..19183905 | 13..799 | 99 | | Minus |
BO04110.5prime Sequence
851 bp (775 high quality bases) assembled on 2005-12-01
> BO04110.5prime
GAAGTTATCAGTCGACATGGTGAGCCTGCTGCAAGAGATCGACACCGAGC
ACGAGGACATGGTCCACCACGCAGCGCTGGACTTCTACGGCCTACTGTTG
GCCACCTGCTCCTCGGACGGCAGCGTCCGCATCTTTCACTCGCGCAAAAA
CAATAAGGCGCTCGCCGAGCTCAAGGGACACCAGGGACCAGTGTGGCAGG
TGGCCTGGGCACATCCCAAGTTTGGCAACATACTGGCATCGTGCTCCTAC
GACCGCAAGGTGATCGTCTGGAAGTCCACAACGCCCCGGGATTGGACTAA
GCTCTACGAATACAGCAACCACGACTCCTCGGTAAACTCGGTGGACTTCG
CGCCATCCGAGTACGGATTGGTGTTGGCCTGCGCCAGTTCGGATGGCTCG
GTATCGGTGCTCACCTGCAACACGGAGTACGGTGTGTGGGATGCCAAGAA
GATACCGAATGCGCACACGATCGGAGTGAATGCCATCTCGTGGTGCCCCG
CCCAGGCACCAGATCCAGCATTTGACCAGCGCGTAACTTCGCGTTCGGCG
GCCGTAAAGCGCCTAGTGAGCGGTGGTTGCGATAATTTAGTGAAGATTTG
GCGGGAGGACAACGACCGCTGGGTGGAGGAGCACCGACTGGAGGCGCACT
CGGATTGGGTGCGCGACGTGGCCTGGGCGCCGTCGATCGGATTGCCCCGC
TCGCAGATTGCCACGGCTTCGCAGGATCGCCATGTGATTGTGTGGAGCAG
CAACGCAGATCTATCCGAGTGGACCTCGACTGTGCTGCACACATTCGACG
ATGCCGTGTGGAGCATCTCGTGGTCAACCACCGGCAACATTCTTGCCGTC
A
BO04110.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6773-PA | 1071 | sec13-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec13-RB | 1809 | CG6773-RB | 389..1223 | 17..851 | 4175 | 100 | Plus |
Sec13-RA | 1343 | CG6773-RA | 104..938 | 17..851 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23357398..23357945 | 304..851 | 2740 | 100 | Plus |
3R | 32079331 | 3R | 23356666..23356952 | 17..303 | 1435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:28:53 has no hits.
BO04110.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:42 Download gff for
BO04110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sec13-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:50 Download gff for
BO04110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6773-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:00 Download gff for
BO04110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec13-RA | 93..937 | 5..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:52 Download gff for
BO04110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec13-RA | 93..937 | 5..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:52 Download gff for
BO04110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23356655..23356952 | 5..303 | 98 | -> | Plus |
3R | 23357398..23357944 | 304..850 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:00 Download gff for
BO04110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19182377..19182674 | 5..303 | 98 | -> | Plus |
arm_3R | 19183120..19183666 | 304..850 | 100 | | Plus |
BO04110.complete Sequence
1102 bp (1102 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629646
> BO04110.complete
GAAGTTATCAGTCGACATGGTGAGCCTGCTGCAAGAGATCGACACCGAGC
ACGAGGACATGGTCCACCACGCAGCGCTGGACTTCTACGGCCTACTGTTG
GCCACCTGCTCCTCGGACGGCAGCGTCCGCATCTTTCACTCGCGCAAAAA
CAATAAGGCGCTCGCCGAGCTCAAGGGACACCAGGGACCAGTGTGGCAGG
TGGCCTGGGCACATCCCAAGTTTGGCAACATACTGGCATCGTGCTCCTAC
GACCGCAAGGTGATCGTCTGGAAGTCCACAACGCCCCGGGATTGGACTAA
GCTCTACGAATACAGCAACCACGACTCCTCGGTAAACTCGGTGGACTTCG
CGCCATCCGAGTACGGATTGGTGTTGGCCTGCGCCAGTTCGGATGGCTCG
GTATCGGTGCTCACCTGCAACACGGAGTACGGTGTGTGGGATGCCAAGAA
GATACCGAATGCGCACACGATCGGAGTGAATGCCATCTCGTGGTGCCCCG
CCCAGGCACCAGATCCAGCATTTGACCAGCGCGTAACTTCGCGTTCGGCG
GCCGTAAAGCGCCTAGTGAGCGGTGGTTGCGATAATTTAGTGAAGATTTG
GCGGGAGGACAACGACCGCTGGGTGGAGGAGCACCGACTGGAGGCGCACT
CGGATTGGGTGCGCGACGTGGCCTGGGCGCCGTCGATCGGATTGCCCCGC
TCGCAGATTGCCACGGCTTCGCAGGATCGCCATGTGATTGTGTGGAGCAG
CAACGCAGATCTATCCGAGTGGACCTCGACTGTGCTGCACACATTCGACG
ATGCCGTGTGGAGCATCTCGTGGTCAACCACCGGCAACATTCTTGCCGTC
ACCGGTGGGGACAACAATGTCACATTGTGGAAGGAGAACACGGAGGGCCA
ATGGATCCGCATCAACTACGAGTCGGGTACGGCCATCCAGTCGAAGCAGC
CCTCGCACCTTCCGCATTCCCACTCCCAGCAGCAGCAGGCGCTACAACAG
CACCAACAACAGGCGCCATCGCATCCAGGTCCTTCCTCCGATTCGGAGCA
TAGCTCGAACCTGTCCAACTCGCAGCTCTCCAACGCAAGCTTTCTAGACC
AT
BO04110.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec13-RB | 1071 | CG6773-PB | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Sec13-RA | 1071 | CG6773-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec13-RB | 1809 | CG6773-RB | 389..1456 | 17..1084 | 5340 | 100 | Plus |
Sec13-RA | 1343 | CG6773-RA | 104..1171 | 17..1084 | 5340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23357398..23358178 | 304..1084 | 3905 | 100 | Plus |
3R | 32079331 | 3R | 23356666..23356952 | 17..303 | 1435 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6803 | 945..1025 | 135 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6815 | 938..1016 | 134 | 63.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2384 | 938..1012 | 132 | 64 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1043..1123 | 939..1018 | 132 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2665 | 943..1011 | 129 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6782 | 977..1025 | 128 | 73.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2499..2541 | 977..1019 | 125 | 76.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2396 | 977..1027 | 120 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6843 | 943..1011 | 113 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6836 | 898..1016 | 112 | 58.1 | Plus |
BO04110.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:40 Download gff for
BO04110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sec13-RA | 1..1071 | 17..1087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:39 Download gff for
BO04110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sec13-RA | 88..1171 | 5..1090 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:30 Download gff for
BO04110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec13-RA | 104..1171 | 17..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:40 Download gff for
BO04110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sec13-RA | 88..1171 | 5..1090 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:40 Download gff for
BO04110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec13-RA | 104..1171 | 17..1086 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:40 Download gff for
BO04110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23356666..23356952 | 17..303 | 100 | -> | Plus |
3R | 23357398..23358178 | 304..1086 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:30 Download gff for
BO04110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19182388..19182674 | 17..303 | 100 | -> | Plus |
arm_3R | 19183120..19183900 | 304..1086 | 99 | | Plus |
BO04110.pep Sequence
Translation from 16 to 1102
> BO04110.pep
MVSLLQEIDTEHEDMVHHAALDFYGLLLATCSSDGSVRIFHSRKNNKALA
ELKGHQGPVWQVAWAHPKFGNILASCSYDRKVIVWKSTTPRDWTKLYEYS
NHDSSVNSVDFAPSEYGLVLACASSDGSVSVLTCNTEYGVWDAKKIPNAH
TIGVNAISWCPAQAPDPAFDQRVTSRSAAVKRLVSGGCDNLVKIWREDND
RWVEEHRLEAHSDWVRDVAWAPSIGLPRSQIATASQDRHVIVWSSNADLS
EWTSTVLHTFDDAVWSISWSTTGNILAVTGGDNNVTLWKENTEGQWIRIN
YESGTAIQSKQPSHLPHSHSQQQQALQQHQQQAPSHPGPSSDSEHSSNLS
NSQLSNASFLDH
BO04110.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec13-PB | 356 | CG6773-PB | 1..356 | 1..356 | 1920 | 100 | Plus |
Sec13-PA | 356 | CG6773-PA | 1..356 | 1..356 | 1920 | 100 | Plus |
Nup44A-PA | 354 | CG8722-PA | 4..307 | 5..296 | 357 | 27.7 | Plus |
Nup44A-PC | 354 | CG8722-PC | 4..307 | 5..296 | 357 | 27.7 | Plus |
Nup44A-PB | 354 | CG8722-PB | 4..307 | 5..296 | 357 | 27.7 | Plus |