Clone Sequence Records
BO04115.3prime Sequence
945 bp (791 high quality bases) assembled on 2005-12-01
> BO04115.3prime
ATGGTCTAGAAAGCTTGCAAAATCATCCGTCATGTCCAGCTCAGAAAGGA
ACTTTTTATAGATGTTCATAAACTGAGCGACGAACGCTTCAAGATGAAAA
ATGTGCTTGGCGCCGGACTGCATCCGGTGCTCGTACTCGGTGGCGAACTC
GAGCGTCTTTGCCTTGATGGACATATCACAATTGTTAACCAGCTGTTCGA
CCAGGCCGCGGAATATGAGATTAGGTGGAACGCCTTGCGTGAGTAGCTCG
TACAGGCGTTCGCGGATCTTCTCCAGTTTGGCAGGCGTTTGCTCACTGAT
AATCTGAGATGCTGTCTCACGCAGGAACACCTGCCAGTCCAGGTCGGGAA
TCTCCTGATTGGCGGTAAACGGCGCCTTGGCCACCTTGGCGGCCTCCAGC
ATCAAAAGTGCTCGCCTGAGATTGCGCTCCGACTTGTCCACAACCCGTTT
GGCCAGCTCCACGGGCAGTGCGAGTCCCTCCCGCTTGCAAGTGTTCTGCA
AGATGGACACGATCTCCGTTTCGTTGGGAGCCGCCACCCGTATGCCCAGG
CAACGCGACCGTATGGCCGGAATGATCCGAGATGTGGAGTTCACCGATAT
GATTATCCGGCACGTGGCCACATATTTCTCCATCGTACGGCGCAGGGCGT
GCTGGGCATCCTTGGTGAGTTCGTCGCCCTCCGAAATTACAATCACCTTG
AATTCCCGTTGGCCACTAATCTCAATTTGATGCGTCTGGGCCACCTGCTT
GATGAGATCGATCACCACCGTGCGGTCGTACATGCCAGCGTCGGAGGGAT
TCACCTCCAAGTGGTAGTTGCTGCTGACCGTCATCACCTCTACCTTCCGA
TTGGATGGCGTGGTGAATGTCATGGTCTCGCTCCTCAACCGCTCAACGCC
GGATCCGTACATCTCCCGTAGCAGGCACATGATGCGTGTCTTCTT
BO04115.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6258-PA | 1071 | RfC38-RA | 142..1068 | 945..19 | 4635 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC38-RB | 1604 | CG6258-RB | 616..1542 | 945..19 | 4635 | 100 | Minus |
| RfC38-RA | 1276 | CG6258-RA | 288..1214 | 945..19 | 4635 | 100 | Minus |
| Nup160-RA | 4747 | CG4738-RA | 4406..4747 | 19..360 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11128994..11129920 | 19..945 | 4635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:16:36 has no hits.
BO04115.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:45 Download gff for
BO04115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-PA | 142..1071 | 15..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:55 Download gff for
BO04115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6258-PA | 142..1071 | 15..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:25 Download gff for
BO04115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-RA | 288..1224 | 10..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:29 Download gff for
BO04115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-RA | 288..1224 | 10..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:29 Download gff for
BO04115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11128984..11129920 | 10..945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:25 Download gff for
BO04115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11128984..11129920 | 10..945 | 99 | | Plus |
BO04115.5prime Sequence
873 bp (796 high quality bases) assembled on 2005-12-01
> BO04115.5prime
GAAGTTATCAGTCGACATGGCACTTTGGGTGGATAAATACCGTCCGCGGG
AGCTGTCCAAATTGGACTTCCACAAGGATCAAGCGGAGAACCTACGCAAC
CTTTGCAAGCAGAGCGATTTTCCTCATCTGATGTTCTACGGACCCTCGGG
TGCTGGCAAGAAGACACGCATCATGTGCCTGCTACGGGAGATGTACGGAT
CCGGCGTTGAGCGGTTGAGGAGCGAGACCATGACATTCACCACGCCATCC
AATCGGAAGGTAGAGGTGATGACGGTCAGCAGCAACTACCACTTGGAGGT
GAATCCCTCCGACGCTGGCATGTACGACCGCACGGTGGTGATCGATCTCA
TCAAGCAGGTGGCCCAGACGCATCAAATTGAGATTAGTGGCCAACGGGAA
TTCAAGGTGATTGTAATTTCGGAGGGCGACGAACTCACCAAGGATGCCCA
GCACGCCCTGCGCCGTACGATGGAGAAATATGTGGCCACGTGCCGGATAA
TCATATCGGTGAACTCCACATCTCGGATCATTCCGGCCATACGGTCGCGT
TGCCTGGGCATACGGGTGGCGGCTCCCAACGAAACGGAGATCGTGTCCAT
CTTGCAGAACACTTGCAAGCGGGAGGGACTCGCACTGCCCGTGGAGCTGG
CCAAACGGGTTGTGGACAAGTCGGAGCGCAATCTCAGGCGAGCACTTTTG
ATGCTGGAGGCCGCCAAGGTGGCCAAGGCGCCGTTTACCGCCAATCAGGA
GATTCCCGACCTGGACTGGCAGGTGTTCCTGCGTGAGACAGCATCTCAGA
TTATCAGTGAGCAAACGCCTGCCAAACTGGAGAAAATCCGCGAACGCCTG
TACGAGCTACTCACGCAAGGCGT
BO04115.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6258-PA | 1071 | RfC38-RA | 1..857 | 17..873 | 4260 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC38-RB | 1604 | CG6258-RB | 471..1331 | 13..873 | 4275 | 99.8 | Plus |
| RfC38-RA | 1276 | CG6258-RA | 143..1003 | 13..873 | 4275 | 99.8 | Plus |
| Nup160-RA | 4747 | CG4738-RA | 4617..4747 | 873..743 | 640 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11129205..11130003 | 873..75 | 3980 | 99.9 | Minus |
| 2L | 23513712 | 2L | 11130111..11130175 | 77..13 | 310 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:59:29 has no hits.
BO04115.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:46 Download gff for
BO04115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:56 Download gff for
BO04115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6258-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:45 Download gff for
BO04115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-RA | 138..1003 | 4..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:14 Download gff for
BO04115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-RA | 138..1003 | 4..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:14 Download gff for
BO04115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11129205..11130001 | 77..873 | 99 | <- | Minus |
| 2L | 11130112..11130180 | 4..76 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:45 Download gff for
BO04115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11129205..11130001 | 77..873 | 99 | <- | Minus |
| arm_2L | 11130112..11130180 | 4..76 | 93 | | Minus |
BO04115.complete Sequence
1102 bp (1102 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629647
> BO04115.complete
GAAGTTATCAGTCGACATGGCACTTTGGGTGGATAAATACCGTCCGCGGG
AGCTGTCCAAATTGGACTTCCACAAGGATCAAGCGGAGAACCTACGCAAC
CTTTGCAAGCAGAGCGATTTTCCTCATCTGATGTTCTACGGACCCTCGGG
TGCTGGCAAGAAGACACGCATCATGTGCCTGCTACGGGAGATGTACGGAT
CCGGCGTTGAGCGGTTGAGGAGCGAGACCATGACATTCACCACGCCATCC
AATCGGAAGGTAGAGGTGATGACGGTCAGCAGCAACTACCACTTGGAGGT
GAATCCCTCCGACGCTGGCATGTACGACCGCACGGTGGTGATCGATCTCA
TCAAGCAGGTGGCCCAGACGCATCAAATTGAGATTAGTGGCCAACGGGAA
TTCAAGGTGATTGTAATTTCGGAGGGCGACGAACTCACCAAGGATGCCCA
GCACGCCCTGCGCCGTACGATGGAGAAATATGTGGCCACGTGCCGGATAA
TCATATCGGTGAACTCCACATCTCGGATCATTCCGGCCATACGGTCGCGT
TGCCTGGGCATACGGGTGGCGGCTCCCAACGAAACGGAGATCGTGTCCAT
CTTGCAGAACACTTGCAAGCGGGAGGGACTCGCACTGCCCGTGGAGCTGG
CCAAACGGGTTGTGGACAAGTCGGAGCGCAATCTCAGGCGAGCACTTTTG
ATGCTGGAGGCCGCCAAGGTGGCCAAGGCGCCGTTTACCGCCAATCAGGA
GATTCCCGACCTGGACTGGCAGGTGTTCCTGCGTGAGACAGCATCTCAGA
TTATCAGTGAGCAAACGCCTGCCAAACTGGAGAAGATCCGCGAACGCCTG
TACGAGCTACTCACGCAAGGCGTTCCACCTAATCTCATATTCCGCGGCCT
GGTCGAACAGCTGGTTAACAATTGTGATATGTCCATCAAGGCAAAGACGC
TCGAGTTCGCCACCGAGTACGAGCACCGGATGCAGTCCGGCGCCAAGCAC
ATTTTTCATCTTGAAGCGTTCGTCGCTCAGTTTATGAACATCTATAAAAA
GTTCCTTTCTGAGCTGGACATGACGGATGATTTTGCAAGCTTTCTAGACC
AT
BO04115.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC38-RB | 1071 | CG6258-PB | 1..1068 | 17..1084 | 5340 | 100 | Plus |
| RfC38-RA | 1071 | CG6258-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC38-RB | 1604 | CG6258-RB | 471..1542 | 13..1084 | 5345 | 99.9 | Plus |
| RfC38-RA | 1276 | CG6258-RA | 143..1214 | 13..1084 | 5345 | 99.9 | Plus |
| Nup160-RA | 4747 | CG4738-RA | 4406..4747 | 1084..743 | 1710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11128994..11130003 | 1084..75 | 5050 | 100 | Minus |
| 2L | 23513712 | 2L | 11130111..11130175 | 77..13 | 310 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:37:16 has no hits.
BO04115.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:41 Download gff for
BO04115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-RA | 1..1071 | 17..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:40 Download gff for
BO04115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-RA | 466..1552 | 4..1093 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:59 Download gff for
BO04115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-RA | 147..1214 | 17..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:41 Download gff for
BO04115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-RA | 466..1552 | 4..1093 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:38 Download gff for
BO04115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-RA | 147..1214 | 17..1086 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:38 Download gff for
BO04115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11130112..11130171 | 17..76 | 100 | | Minus |
| 2L | 11128992..11130001 | 77..1086 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:59 Download gff for
BO04115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11130112..11130171 | 17..76 | 100 | | Minus |
| arm_2L | 11128992..11130001 | 77..1086 | 99 | <- | Minus |
BO04115.pep Sequence
Translation from 16 to 1102
> BO04115.pep
MALWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKT
RIMCLLREMYGSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDA
GMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRR
TMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTC
KREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQEIPDLD
WQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLV
NNCDMSIKAKTLEFATEYEHRMQSGAKHIFHLEAFVAQFMNIYKKFLSEL
DMTDDFASFLDH
BO04115.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC38-PB | 356 | CG6258-PB | 1..356 | 1..356 | 1810 | 100 | Plus |
| RfC38-PA | 356 | CG6258-PA | 1..356 | 1..356 | 1810 | 100 | Plus |
| RfC3-PA | 332 | CG5313-PA | 13..321 | 4..339 | 267 | 25.9 | Plus |
| CG8142-PA | 353 | CG8142-PA | 30..245 | 2..239 | 267 | 29 | Plus |
| RfC4-PA | 331 | CG14999-PA | 18..228 | 4..242 | 235 | 27.6 | Plus |
