Clone Sequence Records
BO04123.3prime Sequence
824 bp (791 high quality bases) assembled on 2005-12-01
> BO04123.3prime
ATGGTCTAGAAAGCTTGCAGTTGTTATAGGATAGCCCCATGGATCCAGTT
TCGAGTTGAGCAGCTCCAGGGAGGCGTCCGCGATCTTGGCCAGAAGCTCT
GCCAGCTTGTGCTTCGTATAGACTTTGTACAACTGCCGATTCTCGCTGGA
TATTTCATCTGCCAGGCGCACGCAACCCGCAAAGTCTCCCGACTTGAACA
TCACTTCGTTCAGAAACAGGGCGATCTCAGGAATGCAGATGGAGCGCAAT
TTCTCCATCTGCAGTAGGCGATGATCCCAGCTCAGCTGCACGGCGTTCTC
GGGCAGCTTGGCGATGAACGGATCCACCAGCCAACCCTTGTCCGGGAACA
TGAGCACATTGTACAGGAGTTCGATGGTTTGCTTGGCCTGCTCCTTAACC
TTGTGCTCCCAGCGCACGACTTCCGATCGGTGAGCCTGCTCCTTGCGCTC
ACTCGCCATGCGCTCCGTGAAGTTGTCCTGCGAGGAAGCTGCGTGTGAAG
TCTGTGGCTTCTTGGGCCTGTTCTGCTGCAGGCGGTTCCATTCGACGAAA
CTGTCGACGCCAGACAGATACGCCTTGTAGCAGAGATACTCCTTCAGGCA
GCACTCCTCACGCGGTGGTATGTTGTCCACCGAGCCGTACAAGCTGACTA
GTTGCTGCACTATGTCGGCCGGCACCATGCGGAAGGTCTGGCGCATGCAC
TCCACCTTGCTGCTGGCCAGATAGGTGCGTATCATGGCGTTGGCCTGCCA
CAGCAACTCACCGCGCTGCTCCGGCAAATGGATTAGCCACTCCAATGCTG
AGATCTTGCGCTGATCGATTGCAG
BO04123.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6743-PA | 2538 | Nup170-RA | 1730..2535 | 824..19 | 4030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup107-RA | 2715 | CG6743-RA | 1856..2661 | 824..19 | 4030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10733773..10734216 | 381..824 | 2220 | 100 | Plus |
| 2L | 23513712 | 2L | 10733347..10733708 | 19..380 | 1810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:17:05 has no hits.
BO04123.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:56 Download gff for
BO04123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6743-PA | 1730..2538 | 18..824 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:04:10 Download gff for
BO04123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6743-PA | 1730..2538 | 18..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:32 Download gff for
BO04123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup107-RA | 1856..2667 | 15..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:35 Download gff for
BO04123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup107-RA | 1856..2667 | 15..824 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:35 Download gff for
BO04123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10733341..10733708 | 15..380 | 99 | <- | Plus |
| 2L | 10733773..10734216 | 381..824 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:32 Download gff for
BO04123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10733341..10733708 | 15..380 | 99 | <- | Plus |
| arm_2L | 10733773..10734216 | 381..824 | 100 | | Plus |
BO04123.5prime Sequence
848 bp (768 high quality bases) assembled on 2005-12-01
> BO04123.5prime
GAAGTTATCAGTCGACATGGCCGACAGCCCGTTCCCGAGGAGCAGCCGCA
GTGGCCTGCTACGCACGACGCTGAACAGCTCGATGCCGCCGCAAAATCTC
TCCCACTCGCTGCTCATCCTCGAGAAGAGCAACGCGGAGCAGAATGAGCT
CTCGCTGATGGAGGACACCGGCGATGATCTGGATCGGGGCAAGAGCCGCA
TGGACGTGCTCTTCCCGCAGTTCTTCGACGTGCTGCAGGCTCAGGGTAAC
GGGCAGGAGGCATTCGAGGTGATCCAATCGCTGACGCAAGTCTGTCGCGG
CGTGGTGGAGCAGCTGGAGCTGGAGATCGATCACGGCATGGGTGGGGAAC
AGGGCGCGCGGCAACGCGAGTCTATGCTCACCTGGCTGCGACAGGAGATA
AACACGTGGCGCCTGCTGCACGCCCTCTTCTACGACCGCATCCTGCTGCA
GACGGACAGGCAGGCGGATGATGAGATGCAAGATGGCCCCACGCTCGGCG
GCAGCGAGAAGGAGGTCATACAGCAGTTGTACGCCCTCAATGCGACGCTG
CGTGAGTACCAGCTGGTGGTGGACTGGCTGGAGGCGTGCTACGACCGGGG
GGAGCAACAAAACCCACTCCACGCCCACGATCGTATGATGGCGTGGGAGA
ACACGCTCTTCCAACTGGAGAACCTGCAGGGCGCCGCCTTTGGCAAGGGC
CATAAGATCGTAACGCGTCTGGATCCAGATGCTCCCGTACGCGAGAAACG
ACCGTTGCACGCCCTCGACGAGGAGGACAACCTGCGCCTGTCCCGCGCCA
TTTTCGAATTGATACGAGCGGGACGCGTCAACGATGGCCCTCAGTTGT
BO04123.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:58:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6743-PA | 2538 | Nup170-RA | 1..823 | 17..839 | 4090 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:09:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup107-RA | 2715 | CG6743-RA | 126..949 | 16..839 | 4105 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10735123..10735946 | 839..16 | 4105 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:09:45 has no hits.
BO04123.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:54:56 Download gff for
BO04123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6743-PA | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:04:11 Download gff for
BO04123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6743-PA | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:00:45 Download gff for
BO04123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup107-RA | 122..958 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:45:23 Download gff for
BO04123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup107-RA | 122..958 | 9..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:45:23 Download gff for
BO04123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10735114..10735950 | 9..848 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:00:45 Download gff for
BO04123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10735114..10735950 | 9..848 | 99 | | Minus |
BO04123.complete Sequence
2569 bp assembled on 2008-08-14
GenBank Submission: FJ629648
> BO04123.complete
GAAGTTATCAGTCGACATGGCCGACAGCCCGTTCCCGAGGAGCAGCCGCA
GTGGCCTGCTACGCACGACGCTGAACAGCTCGATGCCGCCGCAAAATCTC
TCCCACTCGCTGCTCATCCTCGAGAAGAGCAACGCGGAGCAGAATGAGCT
CTCGCTGATGGAGGACACCGGCGATGATCTGGATCGGGGCAAGAGCCGCA
TGGACGTGCTCTTCCCGCAGTTCTTCGACGTGCTGCAGGCTCAGGGTAAC
GGGCAGGAGGCATTCGAGGTGATCCAATCGCTGACGCAAGTCTGTCGCGG
CGTGGTGGAGCAGCTGGAGCTGGAGATCGATCACGGCATGGGTGGGGAAC
AGGGCGCGCGGCAACGCGAGTCTATGCTCACCTGGCTGCGACAGGAGATA
AACACGTGGCGCCTGCTGCACGCCCTCTTCTACGACCGCATCCTGCTGCA
GACGGACAGGCAGGCGGATGATGAGATGCAAGATGGCCCCACGCTCGGCG
GCAGCGAGAAGGAGGTCATACAGCAGTTGTACGCCCTCAATGCGACGCTG
CGTGAGTACCAGCTGGTGGTGGACTGGCTGGAGGCGTGCTACGACCGGGG
GGAGCAACAAAACCCACTCCACGCCCACGATCGTATGATGGCGTGGGAGA
ACACGCTCTTCCAACTGGAGAACCTGCAGGGCGCCGCCTTTGGCAAGGGC
CATAAGATCGTAACGCGTCTGGATCCAGATGCTCCCGTACGCGAGAAACG
ACCGTTGCACGCCCTCGACGAGGAGGACAACCTGCGCCTGTCCCGCGCCA
TTTTCGAATTGATACGAGCGGGACGCGTCGACGATGGCCTCAAGTTGTGC
AAGCACTTCGGACAGACGTGGCGGGCGGCGATCCTTGAGGGCTGGCGTCT
CCACGAGGATCCCAACTTCGAGCAGAATGTCTCGGTGCTGCACGAAAAGC
TGCCCATCGAGGGCAATCCCAGGAGGGATATCTGGAAGCGCTGCGCGTGG
ATGCTGGCCGATTCCAAGAACTATGACGAGTACAGCCGCGCGACGGCGGG
TGTCTTCTCCGGCCACTTGGGCTCGCTGAAAACCCTTTTGCACAGCAACT
GGCACGATTTGCTCTGGGCCCATCTGAAGGTGCAGATCGACATCCGTGTG
GAATCGGAGATACGCGGCTGCTGCCTCAAAAACTACCAACCGATGCCCGA
TGATTACTGGAACGGCAGGATGACGATGGAGCAGATCTTCGAGGAACTGA
ACGTTGCCAAGGATGCGTCGGTGCGGGATTTCGCCCAAAGTCAACTGGGC
ATTATCCAGCGTCATTTAATCCTGGATACTTGCGGCGAGCTGATCCAACA
CATGGTGCGCTGGGTGGAGAAGGATACCTCCCAACAATCGCCCCATCAAT
TGCGCTTTATGGCCCACATAGTGCTCTTCCTGCGTCAAATCGGCCGTGTG
GAGCAGGAGCGACAGGCGGAGAAGATCGTAGCCGCATATGTGGAGGCATT
GATTGCCAGGGGCGAACCGCAGCTAATAGCCTACTATACTGCATCGCTTT
CGAATCCGCTGCAGGTTCAGCTCTACTCGCGGTTTCTGGAGCAAGTGGAG
CAGAAGCGTCCGCGGGAGCTAGCTGTGGATGCCGCCCTGCAGGCGGGCTT
GGATGTGGAACAGATCACACGCGTCACCGTGCAGAATATTCGCCTCGCAC
ATCAGCCACTCGGGGAATTCGGTGAGCCGCAGTCCGGCGAGATCTCTGCA
ATCGATCAGCGCAAGATCTCAGCATTGGAGTGGCTAATCCATTTGCCGGA
GCAGCGCGGTGAGTTGCTGTGGCAGGCCAACGCCATGATACGCACCTATC
TGGCCAGCAGCAAGGTGGAGTGCATGCGCCAGACCTTCCGCATGGTGCCG
GCCGACATAGTGCAGCAACTAGTCAGCTTGTACGGCTCGGTGGACAACAT
ACCACCGCGTGAGGAGTGCTGCCTGAAGGAGTATCTCTGCTACAAGGCGT
ATCTGTCTGGCGTCGACAGTTTCGTCGAATGGAACCGCCTGCAGCAGAAC
AGGCCCAAGAAGCCACAGACTTCACACGCAGCTTCCTCGCAGGACAACTT
CACGGAGCGCATGGCGAGTGAGCGCAAGGAGCAGGCTCACCGATCGGAAG
TCGTGCGCTGGGAGCACAAGGTTAAGGAGCAGGCCAAGCAAACCATCGAA
CTCCTGTACAATGTGCTCATGTTCCCGGACAAGGGTTGGCTGGTGGATCC
GTTCATCGCCAAGCTGCCCGAGAACGCCGTGCAGCTGAGCTGGGATCATC
GCCTACTGCAGATGGAGAAATTGCGCTCCATCTGCATTCCTGAGATCGCC
CTGTTTCTGAACGAAGTGATGTTCAAGTCGGGAGACTTTGCGGGTTGCGT
GCGCCTGGCAGATGAAATATCCAGCGAGAATCGGCAGTTGTACAAAGTCT
ATACGAAGCACAAGCTGGCAGAGCTTCTGGCCAAGATCGCGGACGCCTCC
CTGGAGCTGCTCAACTCGAAACTGGATCCATGGGGCTATCCTATAACAAC
TGCAAGCTTTCTAGACCAT
BO04123.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup107-RA | 2538 | CG6743-PA | 1..2535 | 17..2551 | 12675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup107-RA | 2715 | CG6743-RA | 126..2661 | 16..2551 | 12680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10733773..10735946 | 2189..16 | 10870 | 100 | Minus |
| 2L | 23513712 | 2L | 10733347..10733708 | 2551..2190 | 1810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:20:00 has no hits.
BO04123.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:07 Download gff for
BO04123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup107-RA | 104..2649 | 9..2555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:09 Download gff for
BO04123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup107-RA | 127..2661 | 17..2553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:25 Download gff for
BO04123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup107-RA | 109..2643 | 17..2553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:56 Download gff for
BO04123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup107-RA | 127..2661 | 17..2553 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:56 Download gff for
BO04123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10733343..10733708 | 2190..2553 | 99 | <- | Minus |
| 2L | 10733773..10735945 | 17..2189 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:09 Download gff for
BO04123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10733343..10733708 | 2190..2553 | 99 | <- | Minus |
| arm_2L | 10733773..10735945 | 17..2189 | 100 | | Minus |
BO04123.pep Sequence
Translation from 16 to 2569
> BO04123.pep
MADSPFPRSSRSGLLRTTLNSSMPPQNLSHSLLILEKSNAEQNELSLMED
TGDDLDRGKSRMDVLFPQFFDVLQAQGNGQEAFEVIQSLTQVCRGVVEQL
ELEIDHGMGGEQGARQRESMLTWLRQEINTWRLLHALFYDRILLQTDRQA
DDEMQDGPTLGGSEKEVIQQLYALNATLREYQLVVDWLEACYDRGEQQNP
LHAHDRMMAWENTLFQLENLQGAAFGKGHKIVTRLDPDAPVREKRPLHAL
DEEDNLRLSRAIFELIRAGRVDDGLKLCKHFGQTWRAAILEGWRLHEDPN
FEQNVSVLHEKLPIEGNPRRDIWKRCAWMLADSKNYDEYSRATAGVFSGH
LGSLKTLLHSNWHDLLWAHLKVQIDIRVESEIRGCCLKNYQPMPDDYWNG
RMTMEQIFEELNVAKDASVRDFAQSQLGIIQRHLILDTCGELIQHMVRWV
EKDTSQQSPHQLRFMAHIVLFLRQIGRVEQERQAEKIVAAYVEALIARGE
PQLIAYYTASLSNPLQVQLYSRFLEQVEQKRPRELAVDAALQAGLDVEQI
TRVTVQNIRLAHQPLGEFGEPQSGEISAIDQRKISALEWLIHLPEQRGEL
LWQANAMIRTYLASSKVECMRQTFRMVPADIVQQLVSLYGSVDNIPPREE
CCLKEYLCYKAYLSGVDSFVEWNRLQQNRPKKPQTSHAASSQDNFTERMA
SERKEQAHRSEVVRWEHKVKEQAKQTIELLYNVLMFPDKGWLVDPFIAKL
PENAVQLSWDHRLLQMEKLRSICIPEIALFLNEVMFKSGDFAGCVRLADE
ISSENRQLYKVYTKHKLAELLAKIADASLELLNSKLDPWGYPITTASFLD
H
BO04123.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup107-PA | 845 | CG6743-PA | 1..845 | 1..845 | 4416 | 100 | Plus |
