Clone Sequence Records
BO04144.3prime Sequence
602 bp (601 high quality bases) assembled on 2005-12-01
> BO04144.3prime
ATGGTCTAGAAAGCTTGCGTTCGTCTGTGCGCTGGTGGAGAAGAGCGACA
GAGCGCCGCTGGCGATGCCCACGGAAAAGATGTAGTTGATGAACGGCGTC
GAGTTCTTCAGGATAAAGAAGCTGATGAAAATGATAACGGCCAGGTAGAT
GGCGTTGTTGTAGAAGATGGAGAAGGTGGTGGCCTCGTAGTCGGCTACCT
CGTTCTTCTTCCACAGGATGCGCTCGTCCTTTTCCTTGCGCGTGACCTTC
TTGTCATCGCCCACCTGACGGTTGACCTCGCGGGTCACCGCCTCCTCCCG
CCGTCCGGCGATCTTGTGCTTCAGCTGGAACTTGATGTTCTTGTAGGCGG
TGGCCATCAGATAAGTACTAGCGGCCGTCACCAGGACGAACAGGATGGAG
CTGGGCCACAAGTCCATGTTGTGGATGCGCCAGAAGAGCCAGATTGGAAC
GGCCGACACGATAAAGGCATTGCCGTAGAACAGCGCCGACGACTTGGTGC
TCACGTTGCGGCTAAAGTCCTGCAGCAGCAGCTCCTCTTCCTTGGTGAAG
CCAGAGGACTGGACTTTCTGTTGTTTGCCGGATCCCATGTCGACTGATAA
CT
BO04144.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5885-PA | 573 | CG5885-RA | 1..570 | 588..19 | 2850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:10:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5885-RA | 890 | CG5885-RA | 96..665 | 588..19 | 2850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9917446..9917867 | 19..440 | 2110 | 100 | Plus |
| 2L | 23513712 | 2L | 9917933..9918081 | 440..588 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:10:30 has no hits.
BO04144.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:55:19 Download gff for
BO04144.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-PA | 1..573 | 16..588 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:04:44 Download gff for
BO04144.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-PA | 1..573 | 16..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:00:54 Download gff for
BO04144.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 96..670 | 13..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:45:48 Download gff for
BO04144.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 96..670 | 13..588 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:45:48 Download gff for
BO04144.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9917441..9917867 | 13..440 | 99 | <- | Plus |
| 2L | 9917934..9918081 | 441..588 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:00:54 Download gff for
BO04144.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9917441..9917867 | 13..440 | 99 | <- | Plus |
| arm_2L | 9917934..9918081 | 441..588 | 100 | | Plus |
BO04144.5prime Sequence
602 bp (601 high quality bases) assembled on 2005-12-01
> BO04144.5prime
GAAGTTATCAGTCGACATGGGATCCGGCAAACAACAGAAAGTCCAGTCCT
CTGGCTTCACCAAGGAAGAGGAGCTGCTGCTGCAGGACTTTAGCCGCAAC
GTGAGCACCAAGTCGTCGGCGCTGTTCTACGGCAATGCCTTTATCGTGTC
GGCCGTTCCAATCTGGCTCTTCTGGCGCATCCACAACATGGACTTGTGGC
CCAGCTCCATCCTGTTCGTCCTGGTGACGGCCGCTAGTACTTATCTGATG
GCCACCGCCTACAAGAACATCAAGTTCCAGCTGAAGCACAAGATCGCCGG
ACGGCGGGAGGAGGCGGTGACCCGCGAGGTCAACCGTCAGGTGGGCGATG
ACAAGAAGGTCACGCGCAAGGAAAAGGACGAGCGCATCCTGTGGAAGAAG
AACGAGGTAGCCGACTACGAGGCCACCACCTTCTCCATCTTCTACAACAA
CGCCATCTACCTGGCCGTTATCATTTTCATCAGCTTCTTTATCCTGAAGA
ACTCGACGCCGTTCATCAACTACATCTTTTCCGTGGGCATCGCCAGCGGC
GCTCTGTCGCTCTTCTCCACCAGCGCACAGACGAACGCAAGCTTTCTAGA
CC
BO04144.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5885-PA | 573 | CG5885-RA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:06:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5885-RA | 890 | CG5885-RA | 96..665 | 17..586 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9917446..9917867 | 586..165 | 2110 | 100 | Minus |
| 2L | 23513712 | 2L | 9917933..9918081 | 165..17 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:06:45 has no hits.
BO04144.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:55:20 Download gff for
BO04144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-PA | 1..573 | 17..589 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:04:46 Download gff for
BO04144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-PA | 1..573 | 17..589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:39:55 Download gff for
BO04144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 96..670 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:03 Download gff for
BO04144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 96..670 | 17..592 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:03 Download gff for
BO04144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9917441..9917867 | 165..592 | 99 | <- | Minus |
| 2L | 9917934..9918081 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:39:55 Download gff for
BO04144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9917441..9917867 | 165..592 | 99 | <- | Minus |
| arm_2L | 9917934..9918081 | 17..164 | 100 | | Minus |
BO04144.complete Sequence
604 bp (604 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629649
> BO04144.complete
GAAGTTATCAGTCGACATGGGATCCGGCAAACAACAGAAAGTCCAGTCCT
CTGGCTTCACCAAGGAAGAGGAGCTGCTGCTGCAGGACTTTAGCCGCAAC
GTGAGCACCAAGTCGTCGGCGCTGTTCTACGGCAATGCCTTTATCGTGTC
GGCCGTTCCAATCTGGCTCTTCTGGCGCATCCACAACATGGACTTGTGGC
CCAGCTCCATCCTGTTCGTCCTGGTGACGGCCGCTAGTACTTATCTGATG
GCCACCGCCTACAAGAACATCAAGTTCCAGCTGAAGCACAAGATCGCCGG
ACGGCGGGAGGAGGCGGTGACCCGCGAGGTCAACCGTCAGGTGGGCGATG
ACAAGAAGGTCACGCGCAAGGAAAAGGACGAGCGCATCCTGTGGAAGAAG
AACGAGGTAGCCGACTACGAGGCCACCACCTTCTCCATCTTCTACAACAA
CGCCATCTACCTGGCCGTTATCATTTTCATCAGCTTCTTTATCCTGAAGA
ACTCGACGCCGTTCATCAACTACATCTTTTCCGTGGGCATCGCCAGCGGC
GCTCTGTCGCTCTTCTCCACCAGCGCACAGACGAACGCAAGCTTTCTAGA
CCAT
BO04144.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5885-RA | 573 | CG5885-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5885-RA | 890 | CG5885-RA | 96..665 | 17..586 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9917446..9917867 | 586..165 | 2110 | 100 | Minus |
| 2L | 23513712 | 2L | 9917933..9918081 | 165..17 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:25:15 has no hits.
BO04144.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:29 Download gff for
BO04144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 1..573 | 17..589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:26 Download gff for
BO04144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 85..659 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:49 Download gff for
BO04144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 96..665 | 17..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:29 Download gff for
BO04144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 85..659 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:10 Download gff for
BO04144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5885-RA | 96..665 | 17..588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:10 Download gff for
BO04144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9917443..9917867 | 165..588 | 99 | <- | Minus |
| 2L | 9917934..9918081 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:49 Download gff for
BO04144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9917443..9917867 | 165..588 | 99 | <- | Minus |
| arm_2L | 9917934..9918081 | 17..164 | 100 | | Minus |
BO04144.pep Sequence
Translation from 16 to 604
> BO04144.pep
MGSGKQQKVQSSGFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAVPIW
LFWRIHNMDLWPSSILFVLVTAASTYLMATAYKNIKFQLKHKIAGRREEA
VTREVNRQVGDDKKVTRKEKDERILWKKNEVADYEATTFSIFYNNAIYLA
VIIFISFFILKNSTPFINYIFSVGIASGALSLFSTSAQTNASFLDH
BO04144.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5885-PA | 190 | CG5885-PA | 1..190 | 1..190 | 961 | 100 | Plus |
