Clone BO04147 Report

Search the DGRC for BO04147

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:41
Well:47
Vector:pDNR-Dual
Associated Gene/Transcriptpr-RC
Protein status:BO04147.pep: validated full length
Sequenced Size:538

Clone Sequence Records

BO04147.3prime Sequence

536 bp (535 high quality bases) assembled on 2005-12-01

> BO04147.3prime
ATGGTCTAGAAAGCTTGCATCCGAATCCGACGAGATGTTGGTGCACGAAT
CGTGAGCGATGCGTTTGTTGATGGGGTTGTAGATGCCATTGAGCGGATAC
GGGCCGCGGTAGCTGATAATGTTCTTTGGGGTCTCATGGATCTTCACCTC
GTACAGCAGCTCCGGCTTCTTCAGCTGCAGACGGATGTTGTCCCAGATGT
AAACGGCCAAGTTTTCTGTGGTGCTTGGTGTATTGGCAAAGTATTCGACA
TCCTTATCGAGATTCTTGTGGTCCAGGCGCTTCATAATCACAGTTTCTAT
AGCCTCTTTCAGCTCGGTGATGTTTAGCACCATTCCGGTTCGCCGATCGA
TGGGACCACGGACGGTTATCTCAACTGTATAGTTGTGTCCGTGGCCGTGG
AAATTGTTGCACTTGCCGAAGACTTCCAGATTCTCGGCGTCGCTCAATTG
GGGACTATGGAGACGATGGCAGGCGCTGAAAGTTTCGCGACGGGTTAAAA
AGGCAACAGGTTGCTGCGACATGTCGACTGATAACT

BO04147.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG16784-PC 507 pr-RC 1..504 522..19 2520 100 Minus
CG16784-PB 507 pr-RB 1..504 522..19 2520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
pr-RC 1073 CG16784-RC 370..873 522..19 2520 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20073919..20074128 19..228 1050 100 Plus
2L 23513712 2L 20074191..20074339 229..377 745 100 Plus
2L 23513712 2L 20074771..20074852 375..456 410 100 Plus
2L 23513712 2L 20074958..20075025 455..522 340 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:31:47 has no hits.

BO04147.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:55:22 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:04:49 Download gff for BO04147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16784-PB 1..507 16..522 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:57:56 Download gff for BO04147.3prime
Subject Subject Range Query Range Percent Splice Strand
pr-RC 367..882 9..525 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:11 Download gff for BO04147.3prime
Subject Subject Range Query Range Percent Splice Strand
pr-RC 367..882 9..525 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:11 Download gff for BO04147.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20073910..20074128 9..228 98 <- Plus
2L 20074191..20074336 229..374 100 <- Plus
2L 20074771..20074850 375..454 100 <- Plus
2L 20074958..20075028 455..525 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:57:56 Download gff for BO04147.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20073910..20074128 9..228 98 <- Plus
arm_2L 20074191..20074336 229..374 100 <- Plus
arm_2L 20074771..20074850 375..454 100 <- Plus
arm_2L 20074958..20075028 455..525 98   Plus

BO04147.5prime Sequence

536 bp (467 high quality bases) assembled on 2005-12-01

> BO04147.5prime
GAAGTTATCAGTCGACATGTCGCAGCAACCTGTTGCCTTTTTAACCCGTC
GCGAAACTTTCAGCGCCTGCCATCGTCTCCATAGTCCCCAATTGAGCGAC
GCCGAGAATCTGGAAGTCTTCGGCAAGTGCAACAATTTCCACGGCCACGG
ACACAACTATACAGTTGAGATAACCGTCCGTGGTCCCATCGATCGGCGAA
CCGGAATGGTGCTAAACATCACCGAGCTGAAAGAGGCTATAGAAACTGTG
ATTATGAAGCGCCTGGACCACAAGAATCTCGATAAGGATGTCGAATACTT
TGCCAATACACCAAGCACCACAGAAAACTTGGCCGTTTACATCTGGGACA
ACATCCGTCTGCAGCTGAAGAAGCCGGAGCTGCTGTACGAGGTGAAGATC
CATGAGACCCCAAAGAACATTATCAGCTACCGCGGCCCGTATCCGCTCAA
TGGCATCTACAACCCCATCAACAAACGCATCGCTCACGATTCGTGCACCA
ACATCTCGTCGGATTCGGATGCAAGCTTTCTAGACC

BO04147.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG16784-PC 507 pr-RC 1..504 17..520 2520 100 Plus
CG16784-PB 507 pr-RB 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
pr-RC 1073 CG16784-RC 370..873 17..520 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20073919..20074128 520..311 1050 100 Minus
2L 23513712 2L 20074191..20074339 310..162 745 100 Minus
2L 23513712 2L 20074771..20074852 164..83 410 100 Minus
2L 23513712 2L 20074958..20075025 84..17 340 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:17:57 has no hits.

BO04147.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:55:23 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:04:50 Download gff for BO04147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16784-PB 1..507 17..523 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:41 Download gff for BO04147.5prime
Subject Subject Range Query Range Percent Splice Strand
pr-RC 367..882 14..530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:46 Download gff for BO04147.5prime
Subject Subject Range Query Range Percent Splice Strand
pr-RC 367..882 14..530 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:46 Download gff for BO04147.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20073910..20074128 311..530 98 <- Minus
2L 20074191..20074336 165..310 100 <- Minus
2L 20074771..20074850 85..164 100 <- Minus
2L 20074958..20075028 14..84 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:41 Download gff for BO04147.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20073910..20074128 311..530 98 <- Minus
arm_2L 20074191..20074336 165..310 100 <- Minus
arm_2L 20074771..20074850 85..164 100 <- Minus
arm_2L 20074958..20075028 14..84 98   Minus

BO04147.complete Sequence

538 bp (538 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629650

> BO04147.complete
GAAGTTATCAGTCGACATGTCGCAGCAACCTGTTGCCTTTTTAACCCGTC
GCGAAACTTTCAGCGCCTGCCATCGTCTCCATAGTCCCCAATTGAGCGAC
GCCGAGAATCTGGAAGTCTTCGGCAAGTGCAACAATTTCCACGGCCACGG
ACACAACTATACAGTTGAGATAACCGTCCGTGGTCCCATCGATCGGCGAA
CCGGAATGGTGCTAAACATCACCGAGCTGAAAGAGGCTATAGAAACTGTG
ATTATGAAGCGCCTGGACCACAAGAATCTCGATAAGGATGTCGAATACTT
TGCCAATACACCAAGCACCACAGAAAACTTGGCCGTTTACATCTGGGACA
ACATCCGTCTGCAGCTGAAGAAGCCGGAGCTGCTGTACGAGGTGAAGATC
CATGAGACCCCAAAGAACATTATCAGCTACCGCGGCCCGTATCCGCTCAA
TGGCATCTACAACCCCATCAACAAACGCATCGCTCACGATTCGTGCACCA
ACATCTCGTCGGATTCGGATGCAAGCTTTCTAGACCAT

BO04147.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
pr-RC 507 CG16784-PC 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
pr-RC 1073 CG16784-RC 370..873 17..520 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20073919..20074128 520..311 1050 100 Minus
2L 23513712 2L 20074191..20074339 310..162 745 100 Minus
2L 23513712 2L 20074771..20074852 164..83 410 100 Minus
2L 23513712 2L 20074958..20075025 84..17 340 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:24:37 has no hits.

BO04147.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:34 Download gff for BO04147.complete
Subject Subject Range Query Range Percent Splice Strand
pr-RB 1..507 17..523 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:48 Download gff for BO04147.complete
Subject Subject Range Query Range Percent Splice Strand
pr-RC 388..903 14..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:23 Download gff for BO04147.complete
Subject Subject Range Query Range Percent Splice Strand
pr-RC 370..873 17..522 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:34 Download gff for BO04147.complete
Subject Subject Range Query Range Percent Splice Strand
pr-RC 388..903 14..530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:03 Download gff for BO04147.complete
Subject Subject Range Query Range Percent Splice Strand
pr-RC 370..873 17..522 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:03 Download gff for BO04147.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20074191..20074336 165..310 100 <- Minus
2L 20074771..20074850 85..164 100 <- Minus
2L 20074958..20075025 17..84 100   Minus
2L 20073916..20074128 311..522 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:23 Download gff for BO04147.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20074771..20074850 85..164 100 <- Minus
arm_2L 20074958..20075025 17..84 100   Minus
arm_2L 20073916..20074128 311..522 99 <- Minus
arm_2L 20074191..20074336 165..310 100 <- Minus

BO04147.pep Sequence

Translation from 16 to 538

> BO04147.pep
MSQQPVAFLTRRETFSACHRLHSPQLSDAENLEVFGKCNNFHGHGHNYTV
EITVRGPIDRRTGMVLNITELKEAIETVIMKRLDHKNLDKDVEYFANTPS
TTENLAVYIWDNIRLQLKKPELLYEVKIHETPKNIISYRGPYPLNGIYNP
INKRIAHDSCTNISSDSDASFLDH

BO04147.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
pr-PC 168 CG16784-PC 1..168 1..168 895 100 Plus