Clone Sequence Records
BO04147.3prime Sequence
536 bp (535 high quality bases) assembled on 2005-12-01
> BO04147.3prime
ATGGTCTAGAAAGCTTGCATCCGAATCCGACGAGATGTTGGTGCACGAAT
CGTGAGCGATGCGTTTGTTGATGGGGTTGTAGATGCCATTGAGCGGATAC
GGGCCGCGGTAGCTGATAATGTTCTTTGGGGTCTCATGGATCTTCACCTC
GTACAGCAGCTCCGGCTTCTTCAGCTGCAGACGGATGTTGTCCCAGATGT
AAACGGCCAAGTTTTCTGTGGTGCTTGGTGTATTGGCAAAGTATTCGACA
TCCTTATCGAGATTCTTGTGGTCCAGGCGCTTCATAATCACAGTTTCTAT
AGCCTCTTTCAGCTCGGTGATGTTTAGCACCATTCCGGTTCGCCGATCGA
TGGGACCACGGACGGTTATCTCAACTGTATAGTTGTGTCCGTGGCCGTGG
AAATTGTTGCACTTGCCGAAGACTTCCAGATTCTCGGCGTCGCTCAATTG
GGGACTATGGAGACGATGGCAGGCGCTGAAAGTTTCGCGACGGGTTAAAA
AGGCAACAGGTTGCTGCGACATGTCGACTGATAACT
BO04147.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16784-PC | 507 | pr-RC | 1..504 | 522..19 | 2520 | 100 | Minus |
CG16784-PB | 507 | pr-RB | 1..504 | 522..19 | 2520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:31:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pr-RC | 1073 | CG16784-RC | 370..873 | 522..19 | 2520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:31:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20073919..20074128 | 19..228 | 1050 | 100 | Plus |
2L | 23513712 | 2L | 20074191..20074339 | 229..377 | 745 | 100 | Plus |
2L | 23513712 | 2L | 20074771..20074852 | 375..456 | 410 | 100 | Plus |
2L | 23513712 | 2L | 20074958..20075025 | 455..522 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:31:47 has no hits.
BO04147.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:55:22 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:04:49 Download gff for
BO04147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16784-PB | 1..507 | 16..522 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:57:56 Download gff for
BO04147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pr-RC | 367..882 | 9..525 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:11 Download gff for
BO04147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pr-RC | 367..882 | 9..525 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:11 Download gff for
BO04147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20073910..20074128 | 9..228 | 98 | <- | Plus |
2L | 20074191..20074336 | 229..374 | 100 | <- | Plus |
2L | 20074771..20074850 | 375..454 | 100 | <- | Plus |
2L | 20074958..20075028 | 455..525 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:57:56 Download gff for
BO04147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20073910..20074128 | 9..228 | 98 | <- | Plus |
arm_2L | 20074191..20074336 | 229..374 | 100 | <- | Plus |
arm_2L | 20074771..20074850 | 375..454 | 100 | <- | Plus |
arm_2L | 20074958..20075028 | 455..525 | 98 | | Plus |
BO04147.5prime Sequence
536 bp (467 high quality bases) assembled on 2005-12-01
> BO04147.5prime
GAAGTTATCAGTCGACATGTCGCAGCAACCTGTTGCCTTTTTAACCCGTC
GCGAAACTTTCAGCGCCTGCCATCGTCTCCATAGTCCCCAATTGAGCGAC
GCCGAGAATCTGGAAGTCTTCGGCAAGTGCAACAATTTCCACGGCCACGG
ACACAACTATACAGTTGAGATAACCGTCCGTGGTCCCATCGATCGGCGAA
CCGGAATGGTGCTAAACATCACCGAGCTGAAAGAGGCTATAGAAACTGTG
ATTATGAAGCGCCTGGACCACAAGAATCTCGATAAGGATGTCGAATACTT
TGCCAATACACCAAGCACCACAGAAAACTTGGCCGTTTACATCTGGGACA
ACATCCGTCTGCAGCTGAAGAAGCCGGAGCTGCTGTACGAGGTGAAGATC
CATGAGACCCCAAAGAACATTATCAGCTACCGCGGCCCGTATCCGCTCAA
TGGCATCTACAACCCCATCAACAAACGCATCGCTCACGATTCGTGCACCA
ACATCTCGTCGGATTCGGATGCAAGCTTTCTAGACC
BO04147.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16784-PC | 507 | pr-RC | 1..504 | 17..520 | 2520 | 100 | Plus |
CG16784-PB | 507 | pr-RB | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:18:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pr-RC | 1073 | CG16784-RC | 370..873 | 17..520 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20073919..20074128 | 520..311 | 1050 | 100 | Minus |
2L | 23513712 | 2L | 20074191..20074339 | 310..162 | 745 | 100 | Minus |
2L | 23513712 | 2L | 20074771..20074852 | 164..83 | 410 | 100 | Minus |
2L | 23513712 | 2L | 20074958..20075025 | 84..17 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:17:57 has no hits.
BO04147.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:55:23 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:04:50 Download gff for
BO04147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16784-PB | 1..507 | 17..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:41 Download gff for
BO04147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pr-RC | 367..882 | 14..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:46 Download gff for
BO04147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pr-RC | 367..882 | 14..530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:46 Download gff for
BO04147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20073910..20074128 | 311..530 | 98 | <- | Minus |
2L | 20074191..20074336 | 165..310 | 100 | <- | Minus |
2L | 20074771..20074850 | 85..164 | 100 | <- | Minus |
2L | 20074958..20075028 | 14..84 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:41 Download gff for
BO04147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20073910..20074128 | 311..530 | 98 | <- | Minus |
arm_2L | 20074191..20074336 | 165..310 | 100 | <- | Minus |
arm_2L | 20074771..20074850 | 85..164 | 100 | <- | Minus |
arm_2L | 20074958..20075028 | 14..84 | 98 | | Minus |
BO04147.complete Sequence
538 bp (538 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629650
> BO04147.complete
GAAGTTATCAGTCGACATGTCGCAGCAACCTGTTGCCTTTTTAACCCGTC
GCGAAACTTTCAGCGCCTGCCATCGTCTCCATAGTCCCCAATTGAGCGAC
GCCGAGAATCTGGAAGTCTTCGGCAAGTGCAACAATTTCCACGGCCACGG
ACACAACTATACAGTTGAGATAACCGTCCGTGGTCCCATCGATCGGCGAA
CCGGAATGGTGCTAAACATCACCGAGCTGAAAGAGGCTATAGAAACTGTG
ATTATGAAGCGCCTGGACCACAAGAATCTCGATAAGGATGTCGAATACTT
TGCCAATACACCAAGCACCACAGAAAACTTGGCCGTTTACATCTGGGACA
ACATCCGTCTGCAGCTGAAGAAGCCGGAGCTGCTGTACGAGGTGAAGATC
CATGAGACCCCAAAGAACATTATCAGCTACCGCGGCCCGTATCCGCTCAA
TGGCATCTACAACCCCATCAACAAACGCATCGCTCACGATTCGTGCACCA
ACATCTCGTCGGATTCGGATGCAAGCTTTCTAGACCAT
BO04147.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:24:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pr-RC | 507 | CG16784-PC | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pr-RC | 1073 | CG16784-RC | 370..873 | 17..520 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20073919..20074128 | 520..311 | 1050 | 100 | Minus |
2L | 23513712 | 2L | 20074191..20074339 | 310..162 | 745 | 100 | Minus |
2L | 23513712 | 2L | 20074771..20074852 | 164..83 | 410 | 100 | Minus |
2L | 23513712 | 2L | 20074958..20075025 | 84..17 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:24:37 has no hits.
BO04147.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:34 Download gff for
BO04147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pr-RB | 1..507 | 17..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:48 Download gff for
BO04147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pr-RC | 388..903 | 14..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:23 Download gff for
BO04147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pr-RC | 370..873 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:34 Download gff for
BO04147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pr-RC | 388..903 | 14..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:03 Download gff for
BO04147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pr-RC | 370..873 | 17..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:03 Download gff for
BO04147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20074191..20074336 | 165..310 | 100 | <- | Minus |
2L | 20074771..20074850 | 85..164 | 100 | <- | Minus |
2L | 20074958..20075025 | 17..84 | 100 | | Minus |
2L | 20073916..20074128 | 311..522 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:23 Download gff for
BO04147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20074771..20074850 | 85..164 | 100 | <- | Minus |
arm_2L | 20074958..20075025 | 17..84 | 100 | | Minus |
arm_2L | 20073916..20074128 | 311..522 | 99 | <- | Minus |
arm_2L | 20074191..20074336 | 165..310 | 100 | <- | Minus |
BO04147.pep Sequence
Translation from 16 to 538
> BO04147.pep
MSQQPVAFLTRRETFSACHRLHSPQLSDAENLEVFGKCNNFHGHGHNYTV
EITVRGPIDRRTGMVLNITELKEAIETVIMKRLDHKNLDKDVEYFANTPS
TTENLAVYIWDNIRLQLKKPELLYEVKIHETPKNIISYRGPYPLNGIYNP
INKRIAHDSCTNISSDSDASFLDH
BO04147.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pr-PC | 168 | CG16784-PC | 1..168 | 1..168 | 895 | 100 | Plus |