Clone Sequence Records
BO04148.3prime Sequence
506 bp (505 high quality bases) assembled on 2005-12-01
> BO04148.3prime
ATGGTCTAGAAAGCTTGCGGCCTGAACCCAACGGTCGAACTGCTGGCGCA
ACTGCTGTTCGTGGTGCTGGCGAGCTCCCTCGGCTGAGGTCCAGAAGAAG
GTGCCGCTGGTGGTGCGGGCGAAGTGGACCGGGATGAAGGTCTGCTCCGG
ATGGACGGGCACGATGCTCTGTTGCTGACCCTGCTGCACGATCATGGCCA
CGTTGGTGGGGCACTGGCGGAGATCGGTGTACAGTCGCTGCTCCAGCTCC
TCGTTGGCCATGTTATCGCAACTGGCCGCCGGATCTTTGCGCATGTCCTC
CAGCGAGGCGTTGACTGCATTTTGGTTCTGGATCTCGGCCAGAGTCTTCC
GGAGTAGCTGCTTCTTCTTCACCAGTCGCAGAAGGGGTTTGACCAGTTTC
CTCAGACTCCGCATGGCCATCGTGTGCTGATCTGATTTCGGCTCCATCAC
CTTGCTGCTCTCAAACTTGTATTCCCGTGTGATGAACGACATGTCGACTG
ATAACT
BO04148.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5185-PA | 477 | Tom-RA | 1..474 | 492..19 | 2370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:29:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom-RA | 963 | CG5185-RA | 84..557 | 492..19 | 2370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:29:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14969427..14969900 | 492..19 | 2370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:29:13 has no hits.
BO04148.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:55:24 Download gff for
BO04148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom-PA | 1..477 | 15..492 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:04:52 Download gff for
BO04148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5185-PA | 1..477 | 15..492 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:04 Download gff for
BO04148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom-RA | 76..560 | 15..501 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:26 Download gff for
BO04148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom-RA | 76..560 | 15..501 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:26 Download gff for
BO04148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14969419..14969903 | 15..501 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:04 Download gff for
BO04148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14962519..14963003 | 15..501 | 98 | | Minus |
BO04148.5prime Sequence
506 bp (505 high quality bases) assembled on 2005-12-01
> BO04148.5prime
GAAGTTATCAGTCGACATGTCGTTCATCACACGGGAATACAAGTTTGAGA
GCAGCAAGGTGATGGAGCCGAAATCAGATCAGCACACGATGGCCATGCGG
AGTCTGAGGAAACTGGTCAAACCCCTTCTGCGACTGGTGAAGAAGAAGCA
GCTACTCCGGAAGACTCTGGCCGAGATCCAGAACCAAAATGCAGTCAACG
CCTCGCTGGAGGACATGCGCAAAGATCCGGCGGCCAGTTGCGATAACATG
GCCAACGAGGAGCTGGAGCAGCGACTGTACACCGATCTCCGCCAGTGCCC
CACCAACGTGGCCATGATCGTGCAGCAGGGTCAGCAACAGAGCATCGTGC
CCGTCCATCCGGAGCAGACCTTCATCCCGGTCCACTTCGCCCGCACCACC
AGCGGCACCTTCTTCTGGACCTCAGCCGAGGGAGCTCGCCAGCACCACGA
ACAGCAGTTGCGCCAGCAGTTCGACCGTTGGGTTCAGGCCGCAAGCTTTC
TAGACC
BO04148.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5185-PA | 477 | Tom-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom-RA | 963 | CG5185-RA | 84..557 | 17..490 | 2370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14969427..14969900 | 17..490 | 2370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:51:44 has no hits.
BO04148.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:55:25 Download gff for
BO04148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom-PA | 1..477 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:04:54 Download gff for
BO04148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5185-PA | 1..477 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:03 Download gff for
BO04148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom-RA | 76..560 | 8..494 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:19:55 Download gff for
BO04148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom-RA | 76..560 | 8..494 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:19:55 Download gff for
BO04148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14969419..14969903 | 8..494 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:03 Download gff for
BO04148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14962519..14963003 | 8..494 | 98 | | Plus |
BO04148.complete Sequence
508 bp (508 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629651
> BO04148.complete
GAAGTTATCAGTCGACATGTCGTTCATCACACGGGAATACAAGTTTGAGA
GCAGCAAGGTGATGGAGCCGAAATCAGATCAGCACACGATGGCCATGCGG
AGTCTGAGGAAACTGGTCAAACCCCTTCTGCGACTGGTGAAGAAGAAGCA
GCTACTCCGGAAGACTCTGGCCGAGATCCAGAACCAAAATGCAGTCAACG
CCTCGCTGGAGGACATGCGCAAAGATCCGGCGGCCAGTTGCGATAACATG
GCCAACGAGGAGCTGGAGCAGCGACTGTACACCGATCTCCGCCAGTGCCC
CACCAACGTGGCCATGATCGTGCAGCAGGGTCAGCAACAGAGCATCGTGC
CCGTCCATCCGGAGCAGACCTTCATCCCGGTCCACTTCGCCCGCACCACC
AGCGGCACCTTCTTCTGGACCTCAGCCGAGGGAGCTCGCCAGCACCACGA
ACAGCAGTTGCGCCAGCAGTTCGACCGTTGGGTTCAGGCCGCAAGCTTTC
TAGACCAT
BO04148.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom-RA | 477 | CG5185-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom-RA | 963 | CG5185-RA | 84..557 | 17..490 | 2370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14969427..14969900 | 17..490 | 2370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:00:10 has no hits.
BO04148.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:34 Download gff for
BO04148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom-RA | 1..477 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:50 Download gff for
BO04148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom-RA | 73..557 | 8..494 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:27 Download gff for
BO04148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom-RA | 84..557 | 17..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:35 Download gff for
BO04148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom-RA | 73..557 | 8..494 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:41 Download gff for
BO04148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom-RA | 84..557 | 17..492 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:41 Download gff for
BO04148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14969427..14969900 | 17..492 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:27 Download gff for
BO04148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14962527..14963000 | 17..492 | 99 | | Plus |
BO04148.pep Sequence
Translation from 16 to 508
> BO04148.pep
MSFITREYKFESSKVMEPKSDQHTMAMRSLRKLVKPLLRLVKKKQLLRKT
LAEIQNQNAVNASLEDMRKDPAASCDNMANEELEQRLYTDLRQCPTNVAM
IVQQGQQQSIVPVHPEQTFIPVHFARTTSGTFFWTSAEGARQHHEQQLRQ
QFDRWVQAASFLDH
BO04148.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom-PA | 158 | CG5185-PA | 1..158 | 1..158 | 815 | 100 | Plus |
Ocho-PB | 149 | CG3396-PB | 22..149 | 28..158 | 180 | 37 | Plus |
Ocho-PC | 149 | CG3396-PC | 22..149 | 28..158 | 180 | 37 | Plus |