Clone BO04148 Report

Search the DGRC for BO04148

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:41
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptTom-RA
Protein status:BO04148.pep: validated full length
Sequenced Size:508

Clone Sequence Records

BO04148.3prime Sequence

506 bp (505 high quality bases) assembled on 2005-12-01

> BO04148.3prime
ATGGTCTAGAAAGCTTGCGGCCTGAACCCAACGGTCGAACTGCTGGCGCA
ACTGCTGTTCGTGGTGCTGGCGAGCTCCCTCGGCTGAGGTCCAGAAGAAG
GTGCCGCTGGTGGTGCGGGCGAAGTGGACCGGGATGAAGGTCTGCTCCGG
ATGGACGGGCACGATGCTCTGTTGCTGACCCTGCTGCACGATCATGGCCA
CGTTGGTGGGGCACTGGCGGAGATCGGTGTACAGTCGCTGCTCCAGCTCC
TCGTTGGCCATGTTATCGCAACTGGCCGCCGGATCTTTGCGCATGTCCTC
CAGCGAGGCGTTGACTGCATTTTGGTTCTGGATCTCGGCCAGAGTCTTCC
GGAGTAGCTGCTTCTTCTTCACCAGTCGCAGAAGGGGTTTGACCAGTTTC
CTCAGACTCCGCATGGCCATCGTGTGCTGATCTGATTTCGGCTCCATCAC
CTTGCTGCTCTCAAACTTGTATTCCCGTGTGATGAACGACATGTCGACTG
ATAACT

BO04148.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5185-PA 477 Tom-RA 1..474 492..19 2370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Tom-RA 963 CG5185-RA 84..557 492..19 2370 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14969427..14969900 492..19 2370 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:29:13 has no hits.

BO04148.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:55:24 Download gff for BO04148.3prime
Subject Subject Range Query Range Percent Splice Strand
Tom-PA 1..477 15..492 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:04:52 Download gff for BO04148.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5185-PA 1..477 15..492 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:04 Download gff for BO04148.3prime
Subject Subject Range Query Range Percent Splice Strand
Tom-RA 76..560 15..501 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:26 Download gff for BO04148.3prime
Subject Subject Range Query Range Percent Splice Strand
Tom-RA 76..560 15..501 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:26 Download gff for BO04148.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14969419..14969903 15..501 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:04 Download gff for BO04148.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14962519..14963003 15..501 98   Minus

BO04148.5prime Sequence

506 bp (505 high quality bases) assembled on 2005-12-01

> BO04148.5prime
GAAGTTATCAGTCGACATGTCGTTCATCACACGGGAATACAAGTTTGAGA
GCAGCAAGGTGATGGAGCCGAAATCAGATCAGCACACGATGGCCATGCGG
AGTCTGAGGAAACTGGTCAAACCCCTTCTGCGACTGGTGAAGAAGAAGCA
GCTACTCCGGAAGACTCTGGCCGAGATCCAGAACCAAAATGCAGTCAACG
CCTCGCTGGAGGACATGCGCAAAGATCCGGCGGCCAGTTGCGATAACATG
GCCAACGAGGAGCTGGAGCAGCGACTGTACACCGATCTCCGCCAGTGCCC
CACCAACGTGGCCATGATCGTGCAGCAGGGTCAGCAACAGAGCATCGTGC
CCGTCCATCCGGAGCAGACCTTCATCCCGGTCCACTTCGCCCGCACCACC
AGCGGCACCTTCTTCTGGACCTCAGCCGAGGGAGCTCGCCAGCACCACGA
ACAGCAGTTGCGCCAGCAGTTCGACCGTTGGGTTCAGGCCGCAAGCTTTC
TAGACC

BO04148.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5185-PA 477 Tom-RA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Tom-RA 963 CG5185-RA 84..557 17..490 2370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14969427..14969900 17..490 2370 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:51:44 has no hits.

BO04148.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:55:25 Download gff for BO04148.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom-PA 1..477 17..494 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:04:54 Download gff for BO04148.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5185-PA 1..477 17..494 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:03 Download gff for BO04148.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom-RA 76..560 8..494 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:19:55 Download gff for BO04148.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom-RA 76..560 8..494 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:19:55 Download gff for BO04148.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14969419..14969903 8..494 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:03 Download gff for BO04148.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14962519..14963003 8..494 98   Plus

BO04148.complete Sequence

508 bp (508 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629651

> BO04148.complete
GAAGTTATCAGTCGACATGTCGTTCATCACACGGGAATACAAGTTTGAGA
GCAGCAAGGTGATGGAGCCGAAATCAGATCAGCACACGATGGCCATGCGG
AGTCTGAGGAAACTGGTCAAACCCCTTCTGCGACTGGTGAAGAAGAAGCA
GCTACTCCGGAAGACTCTGGCCGAGATCCAGAACCAAAATGCAGTCAACG
CCTCGCTGGAGGACATGCGCAAAGATCCGGCGGCCAGTTGCGATAACATG
GCCAACGAGGAGCTGGAGCAGCGACTGTACACCGATCTCCGCCAGTGCCC
CACCAACGTGGCCATGATCGTGCAGCAGGGTCAGCAACAGAGCATCGTGC
CCGTCCATCCGGAGCAGACCTTCATCCCGGTCCACTTCGCCCGCACCACC
AGCGGCACCTTCTTCTGGACCTCAGCCGAGGGAGCTCGCCAGCACCACGA
ACAGCAGTTGCGCCAGCAGTTCGACCGTTGGGTTCAGGCCGCAAGCTTTC
TAGACCAT

BO04148.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
Tom-RA 477 CG5185-PA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
Tom-RA 963 CG5185-RA 84..557 17..490 2370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14969427..14969900 17..490 2370 100 Plus
Blast to na_te.dros performed on 2014-11-27 21:00:10 has no hits.

BO04148.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:34 Download gff for BO04148.complete
Subject Subject Range Query Range Percent Splice Strand
Tom-RA 1..477 17..494 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:50 Download gff for BO04148.complete
Subject Subject Range Query Range Percent Splice Strand
Tom-RA 73..557 8..494 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:27 Download gff for BO04148.complete
Subject Subject Range Query Range Percent Splice Strand
Tom-RA 84..557 17..492 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:35 Download gff for BO04148.complete
Subject Subject Range Query Range Percent Splice Strand
Tom-RA 73..557 8..494 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:41 Download gff for BO04148.complete
Subject Subject Range Query Range Percent Splice Strand
Tom-RA 84..557 17..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:41 Download gff for BO04148.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14969427..14969900 17..492 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:27 Download gff for BO04148.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14962527..14963000 17..492 99   Plus

BO04148.pep Sequence

Translation from 16 to 508

> BO04148.pep
MSFITREYKFESSKVMEPKSDQHTMAMRSLRKLVKPLLRLVKKKQLLRKT
LAEIQNQNAVNASLEDMRKDPAASCDNMANEELEQRLYTDLRQCPTNVAM
IVQQGQQQSIVPVHPEQTFIPVHFARTTSGTFFWTSAEGARQHHEQQLRQ
QFDRWVQAASFLDH

BO04148.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Tom-PA 158 CG5185-PA 1..158 1..158 815 100 Plus
Ocho-PB 149 CG3396-PB 22..149 28..158 180 37 Plus
Ocho-PC 149 CG3396-PC 22..149 28..158 180 37 Plus