Clone Sequence Records
BO04150.3prime Sequence
960 bp (867 high quality bases) assembled on 2005-12-01
> BO04150.3prime
ATGGTCTAGAAAGCTTGCTCGTATGGCCTGTGACATGTGCAATGGGGTCA
CCATTAGGGTAAGCTCCGCGTCCTTTAAATTTGCCCCACGCAAATTTGCC
TCCTGCAAGTCGCTGCCAGAAAGATTGCATTTTTCCAAGTCGGCACCTGC
TAACACCGCAGCTCGCAAATTACAGTTCTTCATATTGGCGTTCTTCAAAT
TTGCCACACGTAAGTTAACACCGGCCATGTTGCTGCTTTCCAAACATGCT
CCTTTGAGGTTAACACCCTCTAGATTAGTTCGAACTCCTGTTGGGTCTTC
AAAATTACACCCACGCAAGTTTGCACCTTCCATATTGGCGCAAAGTCCCC
GCACTGACACTAGTTGGGCACATTCCAAGTTTGCGTACTGAAGATCCGCC
CGTTCAAGACAGCAGTAGTTAAGATTGGTGTGGGACAAATTGCAGTGAGA
CATGTTGGCATACTTGAAGTTAATGTTGCGAAAATCTAGCTTTCGTAGAT
CGGCCCCAGACAGATTAACGCCTTGAAAGCGCAGCTCCGTTATCACGGAG
GTCTGAATGATGGCCTTGATGACGTCGTTGCGCGTCAATGGTCTGTCCCC
CAGCGGCGTCTCCTGCTGTCCCAGGCGTTCCTCCAAATGGGTGACAAGCG
AAAAGATTCCGAAGAACCGCGCCTCCTCCAAAACACCCAACACACTGATG
TTCGAATCGCATACGAATTGTCCGTGGCGGAGGTAGTTGATGATCGGCTC
GAAATATCGAGGACTTCGATCAATCAGGTATGCTCCCTGCTCGTCACGCT
CGCTGGGCTTCATGCTGCCATTTTGCAGGAACATCCTAGCAAGCATTGAA
TCCGGTTCTCTGCCCACCAGAGTGTCGATGGTAGTGGCGTAGATTTGTCC
CACCACGTTCAGTTTGACCCAACGATTGGGAGCGAATCCGCTAGCGGCGA
CAAAAATCGC
BO04150.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14647-PA | 1095 | CG14647-RA | 160..1092 | 951..19 | 4615 | 99.7 | Minus |
CG41469-PA | 303 | CG41469-RA | 1..187 | 23..209 | 935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14647-RB | 1178 | CG14647-RB | 137..1073 | 955..19 | 4640 | 99.7 | Minus |
CG9853-RB | 1818 | CG9853-RB | 116..306 | 19..209 | 955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4400646..4401138 | 955..463 | 2420 | 99.4 | Minus |
3R | 32079331 | 3R | 4401600..4401912 | 331..19 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 4401352..4401486 | 464..330 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:28:30 has no hits.
BO04150.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:55:28 Download gff for
BO04150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-PA | 143..1086 | 16..960 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:04:58 Download gff for
BO04150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-PA | 152..1095 | 16..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:17 Download gff for
BO04150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-RB | 133..1082 | 11..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:44 Download gff for
BO04150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-RB | 133..1082 | 11..960 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:44 Download gff for
BO04150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4400642..4401138 | 463..960 | 99 | -> | Minus |
3R | 4401354..4401485 | 331..462 | 100 | -> | Minus |
3R | 4401601..4401919 | 13..330 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:17 Download gff for
BO04150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 226364..226860 | 463..960 | 99 | -> | Minus |
arm_3R | 227076..227207 | 331..462 | 100 | -> | Minus |
arm_3R | 227323..227641 | 13..330 | 98 | -> | Minus |
BO04150.5prime Sequence
889 bp (748 high quality bases) assembled on 2005-12-01
> BO04150.5prime
GAAGTTATCAGTCGACATGACGGGGGAAGAACGGGAAGATAAAGCAGCTG
AGAATTGCCAGGCATTGTGGAAATTTTTTAAACTTCCCAATCAAATGAAT
AGTGATCTGAAGGAGAGTGGTTCCGGAGCCAGAAAAGACGACGCCGCACC
GGCAGCCGGCGATTTCGTCGCCGCTAGCGGATTCGCTCCCAATCGTTGGG
TCAAACTGAACGTGGGTGGACAAATCTACGCCACTACCATCGACACTCTG
GTGGGCAGAGAACCGGATTCAATGCTTGCTAGGATGTTCCTGCAAAATGG
CAGCATGAAGCCCAGCGAGCGTGACGAGCAGGGAGCATACCTGATTGATC
GAAGTCCTCGATATTTCGAGCCGATCATCAACTACCTCCGCCACGGACAA
TTCGTATGCGATTCGAACATCAGTGTGTTGGGTGTTTTGGAGGAGGCGCG
GTTCTTCGGAATCTTTTCGCTTGTCACCCATTTGGAGGAACGCCTGGGAC
AGCAGGAGACGCCGCTGGGGGACAGACCATTGACGCGCAACGACGTCATC
AAGGCCATCATTCAGACCTCCGTGATAACGGAGCTGCGCTTTCAAGGCGT
TAATCTGTCTGGGGCCGATCTACGAAAGCTAGATTTTCGCAACATTAACT
TCAAGTATGCCAACATGTCTCACTGCAATTTGTCCCACACCAATCTTAAC
TACTGCTGTCTTGAACGGGCGGATCTTCAGTACGCAAACTTGGAATGTGC
CCAACTAGTGTCAGTGCGGGGACTTTGCGCCAATATGGAAGGTGCAAACT
TGCGTGGGTGTAATTTTGAAGACCCAACAGGAGTTCGAACTATTCTAGAG
GGGTGTAACCTCAAAGGAGCATGTTTGGAAAGCAGCAAC
BO04150.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14647-PA | 1095 | CG14647-RA | 10..845 | 17..852 | 4155 | 99.8 | Plus |
CG14647-PA | 1095 | CG14647-RA | 849..882 | 856..889 | 170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14647-RB | 1178 | CG14647-RB | 1..863 | 27..889 | 4255 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4400500..4401138 | 17..655 | 3195 | 100 | Plus |
3R | 32079331 | 3R | 4401352..4401486 | 654..788 | 675 | 100 | Plus |
3R | 32079331 | 3R | 4401600..4401702 | 787..889 | 455 | 96.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:22:50 has no hits.
BO04150.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:55:29 Download gff for
BO04150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:04:59 Download gff for
BO04150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-PA | 2..882 | 8..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:46:41 Download gff for
BO04150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-RB | 1..863 | 27..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:55:38 Download gff for
BO04150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-RB | 1..863 | 27..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:38 Download gff for
BO04150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4400491..4401138 | 5..655 | 99 | -> | Plus |
3R | 4401354..4401485 | 656..787 | 100 | -> | Plus |
3R | 4401601..4401702 | 788..889 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:46:41 Download gff for
BO04150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 227323..227424 | 788..889 | 97 | | Plus |
arm_3R | 226213..226860 | 5..655 | 99 | -> | Plus |
arm_3R | 227076..227207 | 656..787 | 100 | -> | Plus |
BO04150.complete Sequence
1117 bp (1117 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629652
> BO04150.complete
GAAGTTATCAGTCGACATGACGGGGGAAGAACGGGAAGATAAAGCAGCTG
AGAATTGCCAGGCATTGTGGAAATTTTTTAAACTTCCCAATCAAATGAAT
AGTGATCTGAAGGAGAGTGGTTCCGGAGCCAGAAAAGACGACGCCGCACC
GGCAGCCGGCGATTTCGTCGCCGCTAGCGGATTCGCTCCCAATCGTTGGG
TCAAACTGAACGTGGGTGGACAAATCTACGCCACTACCATCGACACTCTG
GTGGGCAGAGAACCGGATTCAATGCTTGCTAGGATGTTCCTGCAAAATGG
CAGCATGAAGCCCAGCGAGCGTGACGAGCAGGGAGCATACCTGATTGATC
GAAGTCCTCGATATTTCGAGCCGATCATCAACTACCTCCGCCACGGACAA
TTCGTATGCGATTCGAACATCAGTGTGTTGGGTGTTTTGGAGGAGGCGCG
GTTCTTCGGAATCTTTTCGCTTGTCACCCATTTGGAGGAACGCCTGGGAC
AGCAGGAGACGCCGCTGGGGGACAGACCATTGACGCGCAACGACGTCATC
AAGGCCATCATTCAGACCTCCGTGATAACGGAGCTGCGCTTTCAAGGCGT
TAATCTGTCTGGGGCCGATCTACGAAAGCTAGATTTTCGCAACATTAACT
TCAAGTATGCCAACATGTCTCACTGCAATTTGTCCCACACCAATCTTAAC
TACTGCTGTCTTGAACGGGCGGATCTTCAGTACGCAAACTTGGAATGTGC
CCAACTAGTGTCAGTGCGGGGACTTTGCGCCAATATGGAAGGTGCAAACT
TGCGTGGGTGTAATTTTGAAGACCCAACAGGAGTTCGAACTAATCTAGAG
GGTGTTAACCTCAAAGGAGCATGTTTGGAAAGCAGCAACATGGCCGGTGT
TAACTTACGTGTGGCAAATTTGAAGAACGCCAATATGAAGAACTGTAATT
TGCGAGCTGCGGTGTTAGCAGGTGCCGACTTGGAAAAATGCAATCTTTCT
GGCAGCGACTTGCAGGAGGCAAATTTGCGTGGGGCAAATTTAAAGGACGC
GGAGCTTACCCTAATGGTGACCCCATTGCACATGTCACAGGCCATACGAG
CAAGCTTTCTAGACCAT
BO04150.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14647-RB | 1008 | CG14647-PB | 1..1005 | 95..1099 | 5025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14647-RB | 1178 | CG14647-RB | 1..1073 | 27..1099 | 5365 | 100 | Plus |
CG9853-RB | 1818 | CG9853-RB | 116..306 | 1099..909 | 955 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4400500..4401138 | 17..655 | 3195 | 100 | Plus |
3R | 32079331 | 3R | 4401600..4401912 | 787..1099 | 1565 | 100 | Plus |
3R | 32079331 | 3R | 4401352..4401486 | 654..788 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:36:24 has no hits.
BO04150.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:30 Download gff for
BO04150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-RB | 1..1008 | 95..1102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:46 Download gff for
BO04150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-RB | 11..1093 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:51 Download gff for
BO04150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-RB | 1..1073 | 27..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:31 Download gff for
BO04150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-RB | 2..1102 | 5..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:26 Download gff for
BO04150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-RB | 1..1073 | 27..1101 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:26 Download gff for
BO04150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4400500..4401138 | 17..655 | 100 | -> | Plus |
3R | 4401354..4401485 | 656..787 | 100 | -> | Plus |
3R | 4401601..4401912 | 788..1101 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:51 Download gff for
BO04150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 226222..226860 | 17..655 | 100 | -> | Plus |
arm_3R | 227076..227207 | 656..787 | 100 | -> | Plus |
arm_3R | 227323..227634 | 788..1101 | 99 | | Plus |
BO04150.pep Sequence
Translation from 16 to 1117
> BO04150.pep
MTGEEREDKAAENCQALWKFFKLPNQMNSDLKESGSGARKDDAAPAAGDF
VAASGFAPNRWVKLNVGGQIYATTIDTLVGREPDSMLARMFLQNGSMKPS
ERDEQGAYLIDRSPRYFEPIINYLRHGQFVCDSNISVLGVLEEARFFGIF
SLVTHLEERLGQQETPLGDRPLTRNDVIKAIIQTSVITELRFQGVNLSGA
DLRKLDFRNINFKYANMSHCNLSHTNLNYCCLERADLQYANLECAQLVSV
RGLCANMEGANLRGCNFEDPTGVRTNLEGVNLKGACLESSNMAGVNLRVA
NLKNANMKNCNLRAAVLAGADLEKCNLSGSDLQEANLRGANLKDAELTLM
VTPLHMSQAIRASFLDH
BO04150.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14647-PB | 335 | CG14647-PB | 1..335 | 27..361 | 1730 | 100 | Plus |
inc-PC | 211 | CG32810-PC | 21..138 | 59..183 | 247 | 44 | Plus |
inc-PD | 211 | CG32810-PD | 21..138 | 59..183 | 247 | 44 | Plus |
inc-PB | 211 | CG32810-PB | 21..138 | 59..183 | 247 | 44 | Plus |
CG10465-PA | 301 | CG10465-PA | 18..170 | 59..222 | 163 | 33.3 | Plus |