Clone Sequence Records
BO04154.3prime Sequence
954 bp (912 high quality bases) assembled on 2005-12-01
> BO04154.3prime
ATGGTCTAGAAAGCTTGCGTATTCGTCCTTCTCGAAAGGGTGGTGAGGGT
GACCGTATTGGTTGAGTAGGGGAACAAGGCGGCCGTTGCACTCGAAGCTT
TCGATGATTTCGATTTCCTCAGGTGTCAGTTCGAAGTCGAAGACCTGGAA
GTTGGACTCGATGCGGTCCTTGGTCACAGATTTGGGGATAACAATGTTGG
CACGCTGAACCTGGTATCGAATAAGGATCTGTCCAGGGGTCTTCTTCTTC
TTAGCGGCAATTTCCTTGATCTTAGCCTCCTCTAGGATGACCGGATCACC
AGCCTTGGCCCATGGGCGGTTGGGAGATCCCAAGGGACTGTAGGCAGTGA
TTGTAATGTCCTTTGACTTGCAGAAGTCAATCAGCTTCTTCTGGGTCAGA
TATGGATGGCACTCAATCTGATTGGTTACTGGTGGAATAGTGGCCACCTC
AAGCACGCGCTCGATCTGCCTTCTGTTGAAGTTGGAAACACCAATGGACT
TGACCAGACCCTCTTCCACCAACTTCTCCATGGCCTTCCACGTGTCGACG
TAATCAACCGGCGAGTACAGCGTCTTGCCATCCTTGTCGGTGGGGAACAG
ATCGCATCCCTCCTTGTAGCCCATGGGCCAGTGGATAAGGTACAGATCGA
GGTACTTCAGCTTCAGGGAGCTCAATGTGTTCTCCAATGCCGACTTGACA
AGATCCGGGCGATGGAAAGTGTTCCACAGTTTGCTGGTGATGAACAGATC
CTCACGCTTGACAACGCCCTCCTTGATCTTGGCCTCAACACCATCTCCGA
CCTCATCCTCGTTTTGGTATACATAGGCACAGTCAATGTGCCTGTATCCG
GCATCAATGGCAACTTTGACAGCCTCGGTGACCTGACCCTTGGGGCTGCC
CCAGGTTCCAGTCCATTGATGGGACTTCTTTGCCGTTGTGATTTTACGGT
CGGT
BO04154.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6084-PA | 951 | CG6084-RA | 58..948 | 909..19 | 4455 | 100 | Minus |
CG6084-PB | 1053 | CG6084-RB | 172..1007 | 897..62 | 4180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6084-RA | 1135 | CG6084-RA | 108..1047 | 954..19 | 4540 | 99.1 | Minus |
CG6084-RC | 1172 | CG6084-RC | 206..1084 | 897..19 | 4395 | 100 | Minus |
CG6084-RD | 1316 | CG6084-RD | 108..1004 | 954..62 | 4325 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11621483..11621967 | 271..755 | 2425 | 100 | Plus |
3L | 28110227 | 3L | 11621214..11621424 | 62..272 | 1055 | 100 | Plus |
3L | 28110227 | 3L | 11622033..11622175 | 755..897 | 715 | 100 | Plus |
3L | 28110227 | 3L | 11620623..11620665 | 19..61 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:40:00 has no hits.
BO04154.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:55:34 Download gff for
BO04154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-PA | 9..951 | 18..954 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:05:06 Download gff for
BO04154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-PA | 9..951 | 18..954 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:43 Download gff for
BO04154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 108..1055 | 13..954 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:31 Download gff for
BO04154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 108..1055 | 13..954 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:31 Download gff for
BO04154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11620615..11620665 | 13..61 | 94 | <- | Plus |
3L | 11621214..11621422 | 62..270 | 100 | <- | Plus |
3L | 11621483..11621966 | 271..754 | 100 | <- | Plus |
3L | 11622033..11622175 | 755..897 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:43 Download gff for
BO04154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11613715..11613765 | 13..61 | 94 | <- | Plus |
arm_3L | 11615133..11615275 | 755..897 | 100 | <- | Plus |
arm_3L | 11614314..11614522 | 62..270 | 100 | <- | Plus |
arm_3L | 11614583..11615066 | 271..754 | 100 | <- | Plus |
BO04154.5prime Sequence
828 bp (700 high quality bases) assembled on 2005-12-01
> BO04154.5prime
GAAGTTATCAGTCGACATGGCTGTACCGAACGTTAAATTCAACAACGGCA
AGGAAGTCCCAATCATTGGACTGGGAACCTGGGGCAGCCCCAAGGGTCAG
GTCACCGAGGCTGTCAAAGTTGCCATTGATGCCGGATACAGGCACATTGA
CTGTGCCTATGTATACCAAAACGAGGATGAGGTCGGAGATGGTGTTGAGG
CCAAGATCAAGGAGGGCGTTGTCAAGCGTGAGGATCTGTTCATCACCAGC
AAACTGTGGAACACTTTCCATCGCCCGGATCTTGTCAAGTCGGCATTGGA
GAACACATTGAGCTCCCTGAAGCTGAAGTACCTCGATCTGTACCTTATCC
ACTGGCCCATGGGCTACAAGGAGGGATGCGATCTGTTCCCCACCGACAAG
GATGGCAAGACGCTGTACTCGCCGGTTGATTACGTCGACACGTGGAAGGC
CATGGAGAAGTTGGTGGAAGAGGGTCTGGTCAAGTCCATTGGTGTTTCCA
ACTTCAACAGAAGGCAGATCGAGCGCGTGCTTGAGGTGGCCACTATTCCA
CCAGTAACCAATCAGATTGAGTGCCATCCATATCTGACCCAGAAGAAGCT
GATTGACTTCTGCAAGTCAAAGGACATTACAATCACTGCCTACAGTCCCT
TGGGATCTCCCAACCGCCCATGGGCCAAGGCTGGTGATCCGGTCATCCTA
GAGGAGGCTAAGATCAAGGAAATTGCCGCTAAGAAGAAGAAGACCCCTGG
ACAGATCCTTATTCGATACCAGGTTCAGCGTGCCAACATTGTTATCCCCA
AATCTGTGACCAAGGACCGCATCGAGTC
BO04154.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6084-PA | 951 | CG6084-RA | 1..812 | 17..828 | 4060 | 100 | Plus |
CG6084-PB | 1053 | CG6084-RB | 172..914 | 86..828 | 3715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6084-RD | 1316 | CG6084-RD | 100..911 | 17..828 | 4060 | 100 | Plus |
CG6084-RA | 1135 | CG6084-RA | 100..911 | 17..828 | 4060 | 100 | Plus |
CG6084-RC | 1172 | CG6084-RC | 206..948 | 86..828 | 3715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11621483..11621967 | 712..228 | 2425 | 100 | Minus |
3L | 28110227 | 3L | 11622033..11622175 | 228..86 | 715 | 100 | Minus |
3L | 28110227 | 3L | 11621307..11621424 | 828..711 | 590 | 100 | Minus |
3L | 28110227 | 3L | 11623548..11623616 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:40:07 has no hits.
BO04154.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:55:35 Download gff for
BO04154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-PA | 1..812 | 17..828 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:05:07 Download gff for
BO04154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-PA | 1..812 | 17..828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:45 Download gff for
BO04154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 91..911 | 6..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:55 Download gff for
BO04154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 91..911 | 6..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:55 Download gff for
BO04154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11621307..11621422 | 713..828 | 100 | <- | Minus |
3L | 11621483..11621966 | 229..712 | 100 | <- | Minus |
3L | 11622033..11622175 | 86..228 | 100 | <- | Minus |
3L | 11623548..11623625 | 6..85 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:45 Download gff for
BO04154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11614407..11614522 | 713..828 | 100 | <- | Minus |
arm_3L | 11614583..11615066 | 229..712 | 100 | <- | Minus |
arm_3L | 11615133..11615275 | 86..228 | 100 | <- | Minus |
arm_3L | 11616648..11616725 | 6..85 | 95 | | Minus |
BO04154.complete Sequence
982 bp (982 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629653
> BO04154.complete
GAAGTTATCAGTCGACATGGCTGTACCGAACGTTAAATTCAACAACGGCA
AGGAAGTCCCAATCATTGGACTGGGAACCTGGGGCAGCCCCAAGGGTCAG
GTCACCGAGGCTGTCAAAGTTGCCATTGATGCCGGATACAGGCACATTGA
CTGTGCCTATGTATACCAAAACGAGGATGAGGTCGGAGATGGTGTTGAGG
CCAAGATCAAGGAGGGCGTTGTCAAGCGTGAGGATCTGTTCATCACCAGC
AAACTGTGGAACACTTTCCATCGCCCGGATCTTGTCAAGTCGGCATTGGA
GAACACATTGAGCTCCCTGAAGCTGAAGTACCTCGATCTGTACCTTATCC
ACTGGCCCATGGGCTACAAGGAGGGATGCGATCTGTTCCCCACCGACAAG
GATGGCAAGACGCTGTACTCGCCGGTTGATTACGTCGACACGTGGAAGGC
CATGGAGAAGTTGGTGGAAGAGGGTCTGGTCAAGTCCATTGGTGTTTCCA
ACTTCAACAGAAGGCAGATCGAGCGCGTGCTTGAGGTGGCCACTATTCCA
CCAGTAACCAATCAGATTGAGTGCCATCCATATCTGACCCAGAAGAAGCT
GATTGACTTCTGCAAGTCAAAGGACATTACAATCACTGCCTACAGTCCCT
TGGGATCTCCCAACCGCCCATGGGCCAAGGCTGGTGATCCGGTCATCCTA
GAGGAGGCTAAGATCAAGGAAATTGCCGCTAAGAAGAAGAAGACCCCTGG
ACAGATCCTTATTCGATACCAGGTTCAGCGTGCCAACATTGTTATCCCCA
AATCTGTGACCAAGGACCGCATCGAGTCCAACTTCCAGGTCTTCGACTTC
GAACTGACACCTGAGGAAATCGAAATCATCGAAAGCTTCGAGTGCAACGG
CCGCCTTGTTCCCCTACTCAACCAATACGGTCACCCTCACCACCCTTTCG
AGAAGGACGAATACGCAAGCTTTCTAGACCAT
BO04154.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6084-RA | 951 | CG6084-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
CG6084-RD | 951 | CG6084-PD | 1..905 | 17..921 | 4525 | 100 | Plus |
CG6084-RC | 1053 | CG6084-PC | 172..1050 | 86..964 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6084-RA | 1135 | CG6084-RA | 100..1047 | 17..964 | 4740 | 100 | Plus |
CG6084-RD | 1316 | CG6084-RD | 100..1004 | 17..921 | 4525 | 100 | Plus |
CG6084-RC | 1172 | CG6084-RC | 206..1084 | 86..964 | 4395 | 100 | Plus |
CG6084-RD | 1316 | CG6084-RD | 1186..1228 | 922..964 | 215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:59:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11621483..11621967 | 712..228 | 2425 | 100 | Minus |
3L | 28110227 | 3L | 11621214..11621424 | 921..711 | 1055 | 100 | Minus |
3L | 28110227 | 3L | 11622033..11622175 | 228..86 | 715 | 100 | Minus |
3L | 28110227 | 3L | 11623548..11623616 | 85..17 | 345 | 100 | Minus |
3L | 28110227 | 3L | 11620623..11620665 | 964..922 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:59:26 has no hits.
BO04154.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:33 Download gff for
BO04154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 1..951 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:31 Download gff for
BO04154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 61..1025 | 6..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:01 Download gff for
BO04154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 100..1047 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:33 Download gff for
BO04154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 61..1025 | 6..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:48 Download gff for
BO04154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6084-RA | 100..1047 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:48 Download gff for
BO04154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11620621..11620665 | 922..966 | 95 | <- | Minus |
3L | 11621214..11621422 | 713..921 | 100 | <- | Minus |
3L | 11621483..11621966 | 229..712 | 100 | <- | Minus |
3L | 11622033..11622175 | 86..228 | 100 | <- | Minus |
3L | 11623548..11623616 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:01 Download gff for
BO04154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11615133..11615275 | 86..228 | 100 | <- | Minus |
arm_3L | 11616648..11616716 | 17..85 | 100 | | Minus |
arm_3L | 11613721..11613765 | 922..966 | 95 | <- | Minus |
arm_3L | 11614314..11614522 | 713..921 | 100 | <- | Minus |
arm_3L | 11614583..11615066 | 229..712 | 100 | <- | Minus |
BO04154.pep Sequence
Translation from 16 to 982
> BO04154.pep
MAVPNVKFNNGKEVPIIGLGTWGSPKGQVTEAVKVAIDAGYRHIDCAYVY
QNEDEVGDGVEAKIKEGVVKREDLFITSKLWNTFHRPDLVKSALENTLSS
LKLKYLDLYLIHWPMGYKEGCDLFPTDKDGKTLYSPVDYVDTWKAMEKLV
EEGLVKSIGVSNFNRRQIERVLEVATIPPVTNQIECHPYLTQKKLIDFCK
SKDITITAYSPLGSPNRPWAKAGDPVILEEAKIKEIAAKKKKTPGQILIR
YQVQRANIVIPKSVTKDRIESNFQVFDFELTPEEIEIIESFECNGRLVPL
LNQYGHPHHPFEKDEYASFLDH
BO04154.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6084-PA | 316 | CG6084-PA | 1..316 | 1..316 | 1673 | 100 | Plus |
CG6084-PC | 350 | CG6084-PC | 38..350 | 4..316 | 1602 | 96.8 | Plus |
CG6084-PD | 316 | CG6084-PD | 1..316 | 1..316 | 1599 | 97.2 | Plus |
CG6084-PB | 350 | CG6084-PB | 38..350 | 4..316 | 1528 | 93.9 | Plus |
CG6083-PA | 322 | CG6083-PA | 1..315 | 1..312 | 890 | 53.3 | Plus |