Clone BO04154 Report

Search the DGRC for BO04154

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:41
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG6084-RA
Protein status:BO04154.pep: validated full length
Sequenced Size:982

Clone Sequence Records

BO04154.3prime Sequence

954 bp (912 high quality bases) assembled on 2005-12-01

> BO04154.3prime
ATGGTCTAGAAAGCTTGCGTATTCGTCCTTCTCGAAAGGGTGGTGAGGGT
GACCGTATTGGTTGAGTAGGGGAACAAGGCGGCCGTTGCACTCGAAGCTT
TCGATGATTTCGATTTCCTCAGGTGTCAGTTCGAAGTCGAAGACCTGGAA
GTTGGACTCGATGCGGTCCTTGGTCACAGATTTGGGGATAACAATGTTGG
CACGCTGAACCTGGTATCGAATAAGGATCTGTCCAGGGGTCTTCTTCTTC
TTAGCGGCAATTTCCTTGATCTTAGCCTCCTCTAGGATGACCGGATCACC
AGCCTTGGCCCATGGGCGGTTGGGAGATCCCAAGGGACTGTAGGCAGTGA
TTGTAATGTCCTTTGACTTGCAGAAGTCAATCAGCTTCTTCTGGGTCAGA
TATGGATGGCACTCAATCTGATTGGTTACTGGTGGAATAGTGGCCACCTC
AAGCACGCGCTCGATCTGCCTTCTGTTGAAGTTGGAAACACCAATGGACT
TGACCAGACCCTCTTCCACCAACTTCTCCATGGCCTTCCACGTGTCGACG
TAATCAACCGGCGAGTACAGCGTCTTGCCATCCTTGTCGGTGGGGAACAG
ATCGCATCCCTCCTTGTAGCCCATGGGCCAGTGGATAAGGTACAGATCGA
GGTACTTCAGCTTCAGGGAGCTCAATGTGTTCTCCAATGCCGACTTGACA
AGATCCGGGCGATGGAAAGTGTTCCACAGTTTGCTGGTGATGAACAGATC
CTCACGCTTGACAACGCCCTCCTTGATCTTGGCCTCAACACCATCTCCGA
CCTCATCCTCGTTTTGGTATACATAGGCACAGTCAATGTGCCTGTATCCG
GCATCAATGGCAACTTTGACAGCCTCGGTGACCTGACCCTTGGGGCTGCC
CCAGGTTCCAGTCCATTGATGGGACTTCTTTGCCGTTGTGATTTTACGGT
CGGT

BO04154.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-PA 951 CG6084-RA 58..948 909..19 4455 100 Minus
CG6084-PB 1053 CG6084-RB 172..1007 897..62 4180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-RA 1135 CG6084-RA 108..1047 954..19 4540 99.1 Minus
CG6084-RC 1172 CG6084-RC 206..1084 897..19 4395 100 Minus
CG6084-RD 1316 CG6084-RD 108..1004 954..62 4325 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11621483..11621967 271..755 2425 100 Plus
3L 28110227 3L 11621214..11621424 62..272 1055 100 Plus
3L 28110227 3L 11622033..11622175 755..897 715 100 Plus
3L 28110227 3L 11620623..11620665 19..61 215 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:40:00 has no hits.

BO04154.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:55:34 Download gff for BO04154.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6084-PA 9..951 18..954 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:05:06 Download gff for BO04154.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6084-PA 9..951 18..954 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:43 Download gff for BO04154.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 108..1055 13..954 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:31 Download gff for BO04154.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 108..1055 13..954 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:31 Download gff for BO04154.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11620615..11620665 13..61 94 <- Plus
3L 11621214..11621422 62..270 100 <- Plus
3L 11621483..11621966 271..754 100 <- Plus
3L 11622033..11622175 755..897 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:43 Download gff for BO04154.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11613715..11613765 13..61 94 <- Plus
arm_3L 11615133..11615275 755..897 100 <- Plus
arm_3L 11614314..11614522 62..270 100 <- Plus
arm_3L 11614583..11615066 271..754 100 <- Plus

BO04154.5prime Sequence

828 bp (700 high quality bases) assembled on 2005-12-01

> BO04154.5prime
GAAGTTATCAGTCGACATGGCTGTACCGAACGTTAAATTCAACAACGGCA
AGGAAGTCCCAATCATTGGACTGGGAACCTGGGGCAGCCCCAAGGGTCAG
GTCACCGAGGCTGTCAAAGTTGCCATTGATGCCGGATACAGGCACATTGA
CTGTGCCTATGTATACCAAAACGAGGATGAGGTCGGAGATGGTGTTGAGG
CCAAGATCAAGGAGGGCGTTGTCAAGCGTGAGGATCTGTTCATCACCAGC
AAACTGTGGAACACTTTCCATCGCCCGGATCTTGTCAAGTCGGCATTGGA
GAACACATTGAGCTCCCTGAAGCTGAAGTACCTCGATCTGTACCTTATCC
ACTGGCCCATGGGCTACAAGGAGGGATGCGATCTGTTCCCCACCGACAAG
GATGGCAAGACGCTGTACTCGCCGGTTGATTACGTCGACACGTGGAAGGC
CATGGAGAAGTTGGTGGAAGAGGGTCTGGTCAAGTCCATTGGTGTTTCCA
ACTTCAACAGAAGGCAGATCGAGCGCGTGCTTGAGGTGGCCACTATTCCA
CCAGTAACCAATCAGATTGAGTGCCATCCATATCTGACCCAGAAGAAGCT
GATTGACTTCTGCAAGTCAAAGGACATTACAATCACTGCCTACAGTCCCT
TGGGATCTCCCAACCGCCCATGGGCCAAGGCTGGTGATCCGGTCATCCTA
GAGGAGGCTAAGATCAAGGAAATTGCCGCTAAGAAGAAGAAGACCCCTGG
ACAGATCCTTATTCGATACCAGGTTCAGCGTGCCAACATTGTTATCCCCA
AATCTGTGACCAAGGACCGCATCGAGTC

BO04154.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-PA 951 CG6084-RA 1..812 17..828 4060 100 Plus
CG6084-PB 1053 CG6084-RB 172..914 86..828 3715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-RD 1316 CG6084-RD 100..911 17..828 4060 100 Plus
CG6084-RA 1135 CG6084-RA 100..911 17..828 4060 100 Plus
CG6084-RC 1172 CG6084-RC 206..948 86..828 3715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11621483..11621967 712..228 2425 100 Minus
3L 28110227 3L 11622033..11622175 228..86 715 100 Minus
3L 28110227 3L 11621307..11621424 828..711 590 100 Minus
3L 28110227 3L 11623548..11623616 85..17 345 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:40:07 has no hits.

BO04154.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:55:35 Download gff for BO04154.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6084-PA 1..812 17..828 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:05:07 Download gff for BO04154.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6084-PA 1..812 17..828 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:45 Download gff for BO04154.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 91..911 6..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:55 Download gff for BO04154.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 91..911 6..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:55 Download gff for BO04154.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11621307..11621422 713..828 100 <- Minus
3L 11621483..11621966 229..712 100 <- Minus
3L 11622033..11622175 86..228 100 <- Minus
3L 11623548..11623625 6..85 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:45 Download gff for BO04154.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11614407..11614522 713..828 100 <- Minus
arm_3L 11614583..11615066 229..712 100 <- Minus
arm_3L 11615133..11615275 86..228 100 <- Minus
arm_3L 11616648..11616725 6..85 95   Minus

BO04154.complete Sequence

982 bp (982 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629653

> BO04154.complete
GAAGTTATCAGTCGACATGGCTGTACCGAACGTTAAATTCAACAACGGCA
AGGAAGTCCCAATCATTGGACTGGGAACCTGGGGCAGCCCCAAGGGTCAG
GTCACCGAGGCTGTCAAAGTTGCCATTGATGCCGGATACAGGCACATTGA
CTGTGCCTATGTATACCAAAACGAGGATGAGGTCGGAGATGGTGTTGAGG
CCAAGATCAAGGAGGGCGTTGTCAAGCGTGAGGATCTGTTCATCACCAGC
AAACTGTGGAACACTTTCCATCGCCCGGATCTTGTCAAGTCGGCATTGGA
GAACACATTGAGCTCCCTGAAGCTGAAGTACCTCGATCTGTACCTTATCC
ACTGGCCCATGGGCTACAAGGAGGGATGCGATCTGTTCCCCACCGACAAG
GATGGCAAGACGCTGTACTCGCCGGTTGATTACGTCGACACGTGGAAGGC
CATGGAGAAGTTGGTGGAAGAGGGTCTGGTCAAGTCCATTGGTGTTTCCA
ACTTCAACAGAAGGCAGATCGAGCGCGTGCTTGAGGTGGCCACTATTCCA
CCAGTAACCAATCAGATTGAGTGCCATCCATATCTGACCCAGAAGAAGCT
GATTGACTTCTGCAAGTCAAAGGACATTACAATCACTGCCTACAGTCCCT
TGGGATCTCCCAACCGCCCATGGGCCAAGGCTGGTGATCCGGTCATCCTA
GAGGAGGCTAAGATCAAGGAAATTGCCGCTAAGAAGAAGAAGACCCCTGG
ACAGATCCTTATTCGATACCAGGTTCAGCGTGCCAACATTGTTATCCCCA
AATCTGTGACCAAGGACCGCATCGAGTCCAACTTCCAGGTCTTCGACTTC
GAACTGACACCTGAGGAAATCGAAATCATCGAAAGCTTCGAGTGCAACGG
CCGCCTTGTTCCCCTACTCAACCAATACGGTCACCCTCACCACCCTTTCG
AGAAGGACGAATACGCAAGCTTTCTAGACCAT

BO04154.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-RA 951 CG6084-PA 1..948 17..964 4740 100 Plus
CG6084-RD 951 CG6084-PD 1..905 17..921 4525 100 Plus
CG6084-RC 1053 CG6084-PC 172..1050 86..964 4395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-RA 1135 CG6084-RA 100..1047 17..964 4740 100 Plus
CG6084-RD 1316 CG6084-RD 100..1004 17..921 4525 100 Plus
CG6084-RC 1172 CG6084-RC 206..1084 86..964 4395 100 Plus
CG6084-RD 1316 CG6084-RD 1186..1228 922..964 215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11621483..11621967 712..228 2425 100 Minus
3L 28110227 3L 11621214..11621424 921..711 1055 100 Minus
3L 28110227 3L 11622033..11622175 228..86 715 100 Minus
3L 28110227 3L 11623548..11623616 85..17 345 100 Minus
3L 28110227 3L 11620623..11620665 964..922 215 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:59:26 has no hits.

BO04154.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:33 Download gff for BO04154.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 1..951 17..965 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:31 Download gff for BO04154.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 61..1025 6..970 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:01 Download gff for BO04154.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 100..1047 17..966 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:33 Download gff for BO04154.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 61..1025 6..970 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:48 Download gff for BO04154.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RA 100..1047 17..966 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:48 Download gff for BO04154.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11620621..11620665 922..966 95 <- Minus
3L 11621214..11621422 713..921 100 <- Minus
3L 11621483..11621966 229..712 100 <- Minus
3L 11622033..11622175 86..228 100 <- Minus
3L 11623548..11623616 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:01 Download gff for BO04154.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11615133..11615275 86..228 100 <- Minus
arm_3L 11616648..11616716 17..85 100   Minus
arm_3L 11613721..11613765 922..966 95 <- Minus
arm_3L 11614314..11614522 713..921 100 <- Minus
arm_3L 11614583..11615066 229..712 100 <- Minus

BO04154.pep Sequence

Translation from 16 to 982

> BO04154.pep
MAVPNVKFNNGKEVPIIGLGTWGSPKGQVTEAVKVAIDAGYRHIDCAYVY
QNEDEVGDGVEAKIKEGVVKREDLFITSKLWNTFHRPDLVKSALENTLSS
LKLKYLDLYLIHWPMGYKEGCDLFPTDKDGKTLYSPVDYVDTWKAMEKLV
EEGLVKSIGVSNFNRRQIERVLEVATIPPVTNQIECHPYLTQKKLIDFCK
SKDITITAYSPLGSPNRPWAKAGDPVILEEAKIKEIAAKKKKTPGQILIR
YQVQRANIVIPKSVTKDRIESNFQVFDFELTPEEIEIIESFECNGRLVPL
LNQYGHPHHPFEKDEYASFLDH

BO04154.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-PA 316 CG6084-PA 1..316 1..316 1673 100 Plus
CG6084-PC 350 CG6084-PC 38..350 4..316 1602 96.8 Plus
CG6084-PD 316 CG6084-PD 1..316 1..316 1599 97.2 Plus
CG6084-PB 350 CG6084-PB 38..350 4..316 1528 93.9 Plus
CG6083-PA 322 CG6083-PA 1..315 1..312 890 53.3 Plus