Clone Sequence Records
BO04163.3prime Sequence
871 bp (810 high quality bases) assembled on 2005-12-01
> BO04163.3prime
ATGGTCTAGAAAGCTTGCCTTAGCGGCCTGCTGCTTCAACTGCTCCTGGT
ACATGTAGTGCAGCTCCATGCAGTCGGTGTTGGAGATGTTTACCCAGCCG
TCCTCCTTAATGTGATACACGCGAATGATACCACCGGAGTAGGCATCCCT
GAAGGTGGCATGGTAGATGGCGCGACGTCCCAGCTCCTGGGCCTCCTTGT
CCTCCAGGTCCCAATGATAGCCAGAGTCCAGGACACCGTAGGCGTACAGC
GATCCACTACCAACAGAGAACAAATTGCCAGGCGTGCGAGATCCCTCGGA
GTCCACATAGTAGAGGCCTGGACCACGCTTATCGTAACCGGCCAGCATCA
TGCCCATGCTCAGACCCATTCCCTTGTATTCGTGGGCAATGTTGGCCATT
ATCTTGCTGGCGGCGGCCACCGAGATGCGTTCCTTGTTTCGAAGCTCGTG
AAGGCGGCATTCCTTCGAAAGGACCCTGTCCCAGTAAACGCAATCGGCTG
CGCCACCGGCCAAGGTGCCCAGCATGAACTGATTGATCTCCACGATCTTC
TTCATCGACTGGGAGCCAATGTACGATCCACCCGTGGCACGGGAATCGAC
TGCCAGGAGAACGCCGCCCTTGAACTTGAAGCCCAACGTTGTGGTGCCGT
GATCGAAGTTGATTTTGACGCCGGTCTTGTCGCCATTGGCCTGGATCTGA
TTAAGGTTGTGCAGGGGGTTCTCGAATGGCGGAGCAGCCAGTGTGTAGGG
ATTGGCCAGATTGCACATAAGCCCTTTTTGCTCTTCCTCCACATCCGCCG
ATGACCAGGCATTGGGCCGCATGTACGGAGCATTCGATATCTTGCAGATT
TCAGCTAAAGCCATGTCGACT
BO04163.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12323-PB | 849 | Prosbeta5-RB | 1..846 | 864..19 | 4230 | 100 | Minus |
CG12323-PA | 849 | Prosbeta5-RA | 1..846 | 864..19 | 4230 | 100 | Minus |
CG31742-PA | 840 | CG31742-RA | 478..523 | 381..336 | 155 | 93.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta5-RA | 1139 | CG12323-RA | 96..941 | 864..19 | 4230 | 100 | Minus |
Prosbeta5-RB | 1076 | CG12323-RB | 33..878 | 864..19 | 4230 | 100 | Minus |
Prosbeta5R1-RA | 1107 | CG9868-RA | 373..609 | 574..338 | 255 | 74.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10820282..10820980 | 717..19 | 3495 | 100 | Minus |
2R | 25286936 | 2R | 10820073..10820219 | 864..718 | 735 | 100 | Minus |
2R | 25286936 | 2R | 23309152..23309388 | 338..574 | 255 | 73.8 | Plus |
2L | 23513712 | 2L | 17990976..17991021 | 381..336 | 185 | 93.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:45:45 has no hits.
BO04163.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:55:49 Download gff for
BO04163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12323-PA | 1..849 | 18..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:05:25 Download gff for
BO04163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12323-PA | 1..849 | 18..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:28:17 Download gff for
BO04163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta5-RB | 29..886 | 10..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:02 Download gff for
BO04163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta5-RB | 29..886 | 10..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:02 Download gff for
BO04163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10820069..10820219 | 718..871 | 97 | -> | Minus |
2R | 10820282..10820988 | 10..717 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:28:17 Download gff for
BO04163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6707574..6707724 | 718..871 | 97 | -> | Minus |
arm_2R | 6707787..6708493 | 10..717 | 99 | | Minus |
BO04163.5prime Sequence
866 bp (773 high quality bases) assembled on 2005-12-01
> BO04163.5prime
GAAGTTATCAGTCGACATGGCTTTAGCTGAAATCTGCAAGATATCGAATG
CTCCGTACATGCGGCCCAATGCCTGGTCATCGGCGGATGTGGAGGAAGAG
CAAAAAGGGCTTATGTGCAATCTGGCCAATCCCTACACACTGGCTGCTCC
GCCATTCGAGAACCCCCTGCACAACCTTAATCAGATCCAGGCCAATGGCG
ACAAGACCGGCGTCAAAATCAACTTCGATCACGGCACCACAACGTTGGGC
TTCAAGTTCAAGGGCGGCGTTCTCCTGGCAGTCGATTCCCGTGCCACGGG
TGGATCGTACATTGGCTCCCAGTCGATGAAGAAGATCGTGGAGATCAATC
AGTTCATGCTGGGCACCTTGGCCGGTGGCGCAGCCGATTGCGTTTACTGG
GACAGGGTCCTTTCGAAGGAATGCCGCCTTCACGAGCTTCGAAACAAGGA
ACGCATCTCGGTGGCCGCCGCCAGCAAGATAATGGCCAACATTGCCCACG
AATACAAGGGAATGGGTCTGAGCATGGGCATGATGCTGGCCGGTTACGAT
AAGCGTGGTCCAGGCCTCTACTATGTGGACTCCGAGGGATCTCGCACGCC
TGGCAATTTGTTCTCTGTTGGTAGTGGATCGCTGTACGCCTACGGTGTCC
TGGACTCTGGCTATCATTGGGACCTGGAGGACAAGGAGGCCCAGGAGCTG
GGACGTCGCGCCATCTACCATGCCACCTTCAGGGATGCCTACTCCGGTGG
TATCATTCGCGTGTATCACATTAAGGAGGACGGCTGGGTAAACATCTCCA
ACACCGACTGCATGGAGCTGCACTACATGTACCAGGAGCAGTTGAAGCAG
CAGGCCGCTAAAGCAA
BO04163.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12323-PB | 849 | Prosbeta5-RB | 1..845 | 17..861 | 4225 | 100 | Plus |
CG12323-PA | 849 | Prosbeta5-RA | 1..845 | 17..861 | 4225 | 100 | Plus |
CG31742-PA | 840 | CG31742-RA | 478..523 | 500..545 | 155 | 93.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta5-RA | 1139 | CG12323-RA | 96..940 | 17..861 | 4225 | 100 | Plus |
Prosbeta5-RB | 1076 | CG12323-RB | 33..877 | 17..861 | 4225 | 100 | Plus |
Prosbeta5R1-RA | 1107 | CG9868-RA | 373..609 | 307..543 | 255 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:28:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10820282..10820979 | 164..861 | 3490 | 100 | Plus |
2R | 25286936 | 2R | 10820073..10820219 | 17..163 | 735 | 100 | Plus |
2R | 25286936 | 2R | 23309152..23309388 | 543..307 | 255 | 73.8 | Minus |
2L | 23513712 | 2L | 17990976..17991021 | 500..545 | 185 | 93.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:28:48 has no hits.
BO04163.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:55:50 Download gff for
BO04163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12323-PA | 1..846 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:05:26 Download gff for
BO04163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12323-PA | 1..846 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:21 Download gff for
BO04163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta5-RB | 31..878 | 14..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:50 Download gff for
BO04163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta5-RB | 31..878 | 14..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:50 Download gff for
BO04163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10820071..10820219 | 14..163 | 99 | -> | Plus |
2R | 10820282..10820980 | 164..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:21 Download gff for
BO04163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6707576..6707724 | 14..163 | 99 | -> | Plus |
arm_2R | 6707787..6708485 | 164..864 | 99 | | Plus |
BO04163.complete Sequence
880 bp (880 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629654
> BO04163.complete
GAAGTTATCAGTCGACATGGCTTTAGCTGAAATCTGCAAGATATCGAATG
CTCCGTACATGCGGCCCAATGCCTGGTCATCGGCGGATGTGGAGGAAGAG
CAAAAAGGGCTTATGTGCAATCTGGCCAATCCCTACACACTGGCTGCTCC
GCCATTCGAGAACCCCCTGCACAACCTTAATCAGATCCAGGCCAATGGCG
ACAAGACCGGCGTCAAAATCAACTTCGATCACGGCACCACAACGTTGGGC
TTCAAGTTCAAGGGCGGCGTTCTCCTGGCAGTCGATTCCCGTGCCACGGG
TGGATCGTACATTGGCTCCCAGTCGATGAAGAAGATCGTGGAGATCAATC
AGTTCATGCTGGGCACCTTGGCCGGTGGCGCAGCCGATTGCGTTTACTGG
GACAGGGTCCTTTCGAAGGAATGCCGCCTTCACGAGCTTCGAAACAAGGA
ACGCATCTCGGTGGCCGCCGCCAGCAAGATAATGGCCAACATTGCCCACG
AATACAAGGGAATGGGTCTGAGCATGGGCATGATGCTGGCCGGTTACGAT
AAGCGTGGTCCAGGCCTCTACTATGTGGACTCCGAGGGATCTCGCACGCC
TGGCAATTTGTTCTCTGTTGGTAGTGGATCGCTGTACGCCTACGGTGTCC
TGGACTCTGGCTATCATTGGGACCTGGAGGACAAGGAGGCCCAGGAGCTG
GGACGTCGCGCCATCTACCATGCCACCTTCAGGGATGCCTACTCCGGTGG
TATCATTCGCGTGTATCACATTAAGGAGGACGGCTGGGTAAACATCTCCA
ACACCGACTGCATGGAGCTGCACTACATGTACCAGGAGCAGTTGAAGCAG
CAGGCCGCTAAGGCAAGCTTTCTAGACCAT
BO04163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta5-RA | 849 | CG12323-PA | 1..846 | 17..862 | 4230 | 100 | Plus |
Prosbeta5-RB | 849 | CG12323-PB | 1..846 | 17..862 | 4230 | 100 | Plus |
Prosbeta5R1-RA | 948 | CG9868-PA | 285..521 | 307..543 | 255 | 73.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta5-RA | 1139 | CG12323-RA | 96..941 | 17..862 | 4230 | 100 | Plus |
Prosbeta5-RB | 1076 | CG12323-RB | 33..878 | 17..862 | 4230 | 100 | Plus |
Prosbeta5R1-RA | 1107 | CG9868-RA | 373..609 | 307..543 | 255 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10820282..10820980 | 164..862 | 3495 | 100 | Plus |
2R | 25286936 | 2R | 10820073..10820219 | 17..163 | 735 | 100 | Plus |
2R | 25286936 | 2R | 23309152..23309388 | 543..307 | 255 | 73.8 | Minus |
2L | 23513712 | 2L | 17990976..17991021 | 500..545 | 185 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:17:19 has no hits.
BO04163.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:16 Download gff for
BO04163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta5-RA | 1..849 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:08 Download gff for
BO04163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta5-RA | 91..946 | 14..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:15 Download gff for
BO04163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta5-RB | 33..878 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:16 Download gff for
BO04163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta5-RA | 91..946 | 14..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:59 Download gff for
BO04163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta5-RB | 33..878 | 17..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:59 Download gff for
BO04163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10820073..10820219 | 17..163 | 100 | -> | Plus |
2R | 10820282..10820980 | 164..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:15 Download gff for
BO04163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6707578..6707724 | 17..163 | 100 | -> | Plus |
arm_2R | 6707787..6708485 | 164..864 | 99 | | Plus |
BO04163.pep Sequence
Translation from 16 to 880
> BO04163.pep
MALAEICKISNAPYMRPNAWSSADVEEEQKGLMCNLANPYTLAAPPFENP
LHNLNQIQANGDKTGVKINFDHGTTTLGFKFKGGVLLAVDSRATGGSYIG
SQSMKKIVEINQFMLGTLAGGAADCVYWDRVLSKECRLHELRNKERISVA
AASKIMANIAHEYKGMGLSMGMMLAGYDKRGPGLYYVDSEGSRTPGNLFS
VGSGSLYAYGVLDSGYHWDLEDKEAQELGRRAIYHATFRDAYSGGIIRVY
HIKEDGWVNISNTDCMELHYMYQEQLKQQAAKASFLDH
BO04163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta5-PA | 282 | CG12323-PA | 1..282 | 1..282 | 1493 | 100 | Plus |
Prosbeta5-PB | 282 | CG12323-PB | 1..282 | 1..282 | 1493 | 100 | Plus |
Prosbeta5R1-PA | 315 | CG9868-PA | 1..270 | 1..272 | 882 | 61.2 | Plus |
Prosbeta5R2-PB | 279 | CG31742-PB | 1..277 | 1..279 | 775 | 51.8 | Plus |
Prosbeta5R2-PA | 279 | CG31742-PA | 1..277 | 1..279 | 775 | 51.8 | Plus |