Clone BO04188 Report

Search the DGRC for BO04188

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:41
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG4594-RA
Protein status:BO04188.pep: validated full length
Sequenced Size:874

Clone Sequence Records

BO04188.3prime Sequence

872 bp (817 high quality bases) assembled on 2005-12-01

> BO04188.3prime
ATGGTCTAGAAAGCTTGCTTTCTTGACCTTGTTCTTTAGGTTTTCAAGAT
AAGCTCCCATAACCTTCTGCACTCCCGGGCTAGAAGCTAGAGCTACAAAG
TCAGCAATATCTTTCTCGCGAATCATCTCAAACTCCTTAATGTTGTCGCC
ACGGAACTGGAGCTTGGTCAGTCCGCGGGCCAAAGGATTGACCTTAGCAA
AGGTGCCGATGAAGGCAGCGCACTTCTCCAAGGCCTCTTCCTTGCTGCTG
GCGATCTCATCGATCAGGCCAACTTCAAAGGCCTCCTGTGTGGTGAACAT
ACGTCCTTGGGTGAGAGCTCGCTCTGCCACCCGTTTGGGCAGTATGCTAG
CGAAGCCGGACATTAGCCACTTGGGTGCAATGATTCCTAGTTGGGCTTCG
TTTAATCCAATCAAAAAGTTGGGCCGCATCACTCGATACTCACAGGCAGT
GGCCAGCAGGCAACCGCCAGCGGGGGCGTGGCCATTGATGGCTGCTGCCG
TGGGCAAAGTTGTTCCATAGAGGGCAATCCATACATTCTGCAATTCGGTC
CAAACGGTTCGGAGTCGCTCCACGTCTGTGTTATACATTTCAAAGATGTC
CAGGCCAGCTGAGAACACATTGGAGCTGGCAGAGGTTAAAATGAGACCCC
GACTTTTATTGTTCTCAATTTCGCTAATGGAAGTCTGCAGGTCCAAAAGC
AGCTGGACATTTTGGCTATTCACCGGAGGCCGGTTCATCGTGAGAGTAGC
GATTCCTGTCTTATCGTTGATCTCCACTGTGGTCAGCTTGGTGGCGGTGG
ACATTAATCTACTTGGAGCCCCGTGGGCCATCAATCTTAAGAAATTTGAG
CGCAGCATGTCGACTGATAACT

BO04188.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-PA 843 CG4594-RA 1..840 858..19 4200 100 Minus
CG4598-PA 846 CG4598-RA 55..131 804..728 185 89.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-RB 1103 CG4594-RB 123..962 858..19 4200 100 Minus
CG4594-RA 1099 CG4594-RA 119..958 858..19 4200 100 Minus
CG4598-RB 1216 CG4598-RB 151..803 804..152 595 73.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9920854..9921318 483..19 2325 100 Minus
2L 23513712 2L 9920374..9920602 858..630 1145 100 Minus
2L 23513712 2L 9920654..9920801 630..483 740 100 Minus
2L 23513712 2L 9918935..9919101 804..638 325 79.6 Minus
2L 23513712 2L 9919379..9919707 480..152 265 72 Minus
Blast to na_te.dros performed on 2015-02-12 01:02:36 has no hits.

BO04188.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:19 Download gff for BO04188.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-PA 1..843 18..858 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:11 Download gff for BO04188.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-PA 1..843 18..858 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:08 Download gff for BO04188.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 113..958 19..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:46:48 Download gff for BO04188.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 113..958 19..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:46:48 Download gff for BO04188.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9920368..9920601 631..865 98 -> Minus
2L 9920654..9920800 484..630 100 -> Minus
2L 9920854..9921318 19..483 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:08 Download gff for BO04188.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9920368..9920601 631..865 98 -> Minus
arm_2L 9920654..9920800 484..630 100 -> Minus
arm_2L 9920854..9921318 19..483 100   Minus

BO04188.5prime Sequence

872 bp (838 high quality bases) assembled on 2005-12-01

> BO04188.5prime
GAAGTTATCAGTCGACATGCTGCGCTCAAATTTCTTAAGATTGATGGCCC
ACGGGGCTCCAAGTAGATTAATGTCCACCGCCACCAAGCTGACCACAGTG
GAGATCAACGATAAGACAGGAATCGCTACTCTCACGATGAACCGGCCTCC
GGTGAATAGCCAAAATGTCCAGCTGCTTTTGGACCTGCAGACTTCCATTA
GCGAAATTGAGAACAATAAAAGTCGGGGTCTCATTTTAACCTCTGCCAGC
TCCAATGTGTTCTCAGCTGGCCTGGACATCTTTGAAATGTATAACACAGA
CGTGGAGCGACTCCGAACCGTTTGGACCGAATTGCAGAATGTATGGATTG
CCCTCTATGGAACAACTTTGCCCACGGCAGCAGCCATCAATGGCCACGCC
CCCGCTGGCGGTTGCCTGCTGGCCACTGCCTGTGAGTATCGAGTGATGCG
GCCCAACTTTTTGATTGGATTAAACGAAGCCCAACTAGGAATCATTGCAC
CCAAGTGGCTAATGTCCGGCTTCGCTAGCATACTGCCCAAACGGGTGGCA
GAGCGAGCTCTCACCCAAGGACGTATGTTCACCACACAGGAGGCCTTTGA
AGTTGGCCTGATCGATGAGATCGCCAGCAGCAAGGAAGAGGCCTTGGAGA
AGTGCGCTGCCTTCATCGGCACCTTTGCTAAGGTCAATCCTTTGGCCCGC
GGACTGACCAAGCTCCAGTTCCGTGGCGACAACATTAAGGAGTTTGAGAT
GATTCGCGAGAAAGATATTGCTGACTTTGTAGCTCTAGCTTCTAGCCCGG
GAGTGCAGAAGGTTATGGGAGCTTATCTTGAAAAACTAAAGAACAAGGTC
AAGAAAGCAAGCTTTCTAGACC

BO04188.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-PA 843 CG4594-RA 1..840 17..856 4175 99.8 Plus
CG4598-PA 846 CG4598-RA 55..131 71..147 185 89.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-RB 1103 CG4594-RB 123..962 17..856 4185 99.9 Plus
CG4594-RA 1099 CG4594-RA 119..958 17..856 4185 99.9 Plus
CG4598-RB 1216 CG4598-RB 151..803 71..723 595 73.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9920854..9921318 392..856 2310 99.8 Plus
2L 23513712 2L 9920374..9920602 17..245 1145 100 Plus
2L 23513712 2L 9920654..9920801 245..392 740 100 Plus
2L 23513712 2L 9918935..9919101 71..237 325 79.6 Plus
2L 23513712 2L 9919379..9919707 395..723 265 72 Plus
Blast to na_te.dros performed on 2015-02-13 15:11:16 has no hits.

BO04188.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:20 Download gff for BO04188.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-PA 1..843 17..857 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:12 Download gff for BO04188.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-PA 1..843 17..857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:04 Download gff for BO04188.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 113..958 10..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:46:06 Download gff for BO04188.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 113..958 10..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:46:06 Download gff for BO04188.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9920368..9920601 10..244 98 -> Plus
2L 9920654..9920800 245..391 100 -> Plus
2L 9920854..9921318 392..856 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:04 Download gff for BO04188.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9920368..9920601 10..244 98 -> Plus
arm_2L 9920654..9920800 245..391 100 -> Plus
arm_2L 9920854..9921318 392..856 99   Plus

BO04188.complete Sequence

874 bp (874 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629655

> BO04188.complete
GAAGTTATCAGTCGACATGCTGCGCTCAAATTTCTTAAGATTGATGGCCC
ACGGGGCTCCAAGTAGATTAATGTCCACCGCCACCAAGCTGACCACAGTG
GAGATCAACGATAAGACAGGAATCGCTACTCTCACGATGAACCGGCCTCC
GGTGAATAGCCAAAATGTCCAGCTGCTTTTGGACCTGCAGACTTCCATTA
GCGAAATTGAGAACAATAAAAGTCGGGGTCTCATTTTAACCTCTGCCAGC
TCCAATGTGTTCTCAGCTGGCCTGGACATCTTTGAAATGTATAACACAGA
CGTGGAGCGACTCCGAACCGTTTGGACCGAATTGCAGAATGTATGGATTG
CCCTCTATGGAACAACTTTGCCCACGGCAGCAGCCATCAATGGCCACGCC
CCCGCTGGCGGTTGCCTGCTGGCCACTGCCTGTGAGTATCGAGTGATGCG
GCCCAACTTTTTGATTGGATTAAACGAAGCCCAACTAGGAATCATTGCAC
CCAAGTGGCTAATGTCCGGCTTCGCTAGCATACTGCCCAAACGGGTGGCA
GAGCGAGCTCTCACCCAAGGACGTATGTTCACCACACAGGAGGCCTTTGA
AGTTGGCCTGATCGATGAGATCGCCAGCAGCAAGGAAGAGGCCTTGGAGA
AGTGCGCTGCCTTCATCGGCACCTTTGCTAAGGTCAATCCTTTGGCCCGC
GGACTGACCAAGCTCCAGTTCCGTGGCGACAACATTAAGGAGTTTGAGAT
GATTCGCGAGAAAGATATTGCTGACTTTGTAGCTCTAGCTTCTAGCCCGG
GAGTGCAGAAGGTTATGGGAGCTTATCTTGAAAACCTAAAGAACAAGGTC
AAGAAAGCAAGCTTTCTAGACCAT

BO04188.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-RB 843 CG4594-PB 1..840 17..856 4200 100 Plus
CG4594-RA 843 CG4594-PA 1..840 17..856 4200 100 Plus
CG4598-RB 846 CG4598-PB 55..707 71..723 595 72.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-RB 1103 CG4594-RB 123..962 17..856 4200 100 Plus
CG4594-RA 1099 CG4594-RA 119..958 17..856 4200 100 Plus
CG4598-RB 1216 CG4598-RB 151..803 71..723 595 72.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9920854..9921318 392..856 2325 100 Plus
2L 23513712 2L 9920374..9920602 17..245 1145 100 Plus
2L 23513712 2L 9920654..9920801 245..392 740 100 Plus
2L 23513712 2L 9918935..9919101 71..237 325 79.6 Plus
2L 23513712 2L 9919379..9919707 395..723 265 72 Plus
Blast to na_te.dros performed on 2014-11-28 00:39:25 has no hits.

BO04188.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:26 Download gff for BO04188.complete
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 1..843 17..857 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:22 Download gff for BO04188.complete
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 18..863 10..856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:46 Download gff for BO04188.complete
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 119..958 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:26 Download gff for BO04188.complete
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 18..863 10..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:15 Download gff for BO04188.complete
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 119..958 17..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:15 Download gff for BO04188.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9920374..9920601 17..244 100 -> Plus
2L 9920654..9920800 245..391 100 -> Plus
2L 9920854..9921318 392..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:46 Download gff for BO04188.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9920374..9920601 17..244 100 -> Plus
arm_2L 9920654..9920800 245..391 100 -> Plus
arm_2L 9920854..9921318 392..858 99   Plus

BO04188.pep Sequence

Translation from 16 to 874

> BO04188.pep
MLRSNFLRLMAHGAPSRLMSTATKLTTVEINDKTGIATLTMNRPPVNSQN
VQLLLDLQTSISEIENNKSRGLILTSASSNVFSAGLDIFEMYNTDVERLR
TVWTELQNVWIALYGTTLPTAAAINGHAPAGGCLLATACEYRVMRPNFLI
GLNEAQLGIIAPKWLMSGFASILPKRVAERALTQGRMFTTQEAFEVGLID
EIASSKEEALEKCAAFIGTFAKVNPLARGLTKLQFRGDNIKEFEMIREKD
IADFVALASSPGVQKVMGAYLENLKNKVKKASFLDH

BO04188.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-PB 280 CG4594-PB 1..280 1..280 1406 100 Plus
CG4594-PA 280 CG4594-PA 1..280 1..280 1406 100 Plus
CG4598-PB 281 CG4598-PB 1..280 1..280 1001 67.1 Plus
CG4598-PA 281 CG4598-PA 1..280 1..280 1001 67.1 Plus
CG4592-PB 287 CG4592-PB 23..286 7..277 755 54.6 Plus