Clone Sequence Records
BO04188.3prime Sequence
872 bp (817 high quality bases) assembled on 2005-12-01
> BO04188.3prime
ATGGTCTAGAAAGCTTGCTTTCTTGACCTTGTTCTTTAGGTTTTCAAGAT
AAGCTCCCATAACCTTCTGCACTCCCGGGCTAGAAGCTAGAGCTACAAAG
TCAGCAATATCTTTCTCGCGAATCATCTCAAACTCCTTAATGTTGTCGCC
ACGGAACTGGAGCTTGGTCAGTCCGCGGGCCAAAGGATTGACCTTAGCAA
AGGTGCCGATGAAGGCAGCGCACTTCTCCAAGGCCTCTTCCTTGCTGCTG
GCGATCTCATCGATCAGGCCAACTTCAAAGGCCTCCTGTGTGGTGAACAT
ACGTCCTTGGGTGAGAGCTCGCTCTGCCACCCGTTTGGGCAGTATGCTAG
CGAAGCCGGACATTAGCCACTTGGGTGCAATGATTCCTAGTTGGGCTTCG
TTTAATCCAATCAAAAAGTTGGGCCGCATCACTCGATACTCACAGGCAGT
GGCCAGCAGGCAACCGCCAGCGGGGGCGTGGCCATTGATGGCTGCTGCCG
TGGGCAAAGTTGTTCCATAGAGGGCAATCCATACATTCTGCAATTCGGTC
CAAACGGTTCGGAGTCGCTCCACGTCTGTGTTATACATTTCAAAGATGTC
CAGGCCAGCTGAGAACACATTGGAGCTGGCAGAGGTTAAAATGAGACCCC
GACTTTTATTGTTCTCAATTTCGCTAATGGAAGTCTGCAGGTCCAAAAGC
AGCTGGACATTTTGGCTATTCACCGGAGGCCGGTTCATCGTGAGAGTAGC
GATTCCTGTCTTATCGTTGATCTCCACTGTGGTCAGCTTGGTGGCGGTGG
ACATTAATCTACTTGGAGCCCCGTGGGCCATCAATCTTAAGAAATTTGAG
CGCAGCATGTCGACTGATAACT
BO04188.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-PA | 843 | CG4594-RA | 1..840 | 858..19 | 4200 | 100 | Minus |
CG4598-PA | 846 | CG4598-RA | 55..131 | 804..728 | 185 | 89.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-RB | 1103 | CG4594-RB | 123..962 | 858..19 | 4200 | 100 | Minus |
CG4594-RA | 1099 | CG4594-RA | 119..958 | 858..19 | 4200 | 100 | Minus |
CG4598-RB | 1216 | CG4598-RB | 151..803 | 804..152 | 595 | 73.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9920854..9921318 | 483..19 | 2325 | 100 | Minus |
2L | 23513712 | 2L | 9920374..9920602 | 858..630 | 1145 | 100 | Minus |
2L | 23513712 | 2L | 9920654..9920801 | 630..483 | 740 | 100 | Minus |
2L | 23513712 | 2L | 9918935..9919101 | 804..638 | 325 | 79.6 | Minus |
2L | 23513712 | 2L | 9919379..9919707 | 480..152 | 265 | 72 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:02:36 has no hits.
BO04188.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:19 Download gff for
BO04188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-PA | 1..843 | 18..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:11 Download gff for
BO04188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-PA | 1..843 | 18..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:08 Download gff for
BO04188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 113..958 | 19..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:46:48 Download gff for
BO04188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 113..958 | 19..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:46:48 Download gff for
BO04188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9920368..9920601 | 631..865 | 98 | -> | Minus |
2L | 9920654..9920800 | 484..630 | 100 | -> | Minus |
2L | 9920854..9921318 | 19..483 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:08 Download gff for
BO04188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9920368..9920601 | 631..865 | 98 | -> | Minus |
arm_2L | 9920654..9920800 | 484..630 | 100 | -> | Minus |
arm_2L | 9920854..9921318 | 19..483 | 100 | | Minus |
BO04188.5prime Sequence
872 bp (838 high quality bases) assembled on 2005-12-01
> BO04188.5prime
GAAGTTATCAGTCGACATGCTGCGCTCAAATTTCTTAAGATTGATGGCCC
ACGGGGCTCCAAGTAGATTAATGTCCACCGCCACCAAGCTGACCACAGTG
GAGATCAACGATAAGACAGGAATCGCTACTCTCACGATGAACCGGCCTCC
GGTGAATAGCCAAAATGTCCAGCTGCTTTTGGACCTGCAGACTTCCATTA
GCGAAATTGAGAACAATAAAAGTCGGGGTCTCATTTTAACCTCTGCCAGC
TCCAATGTGTTCTCAGCTGGCCTGGACATCTTTGAAATGTATAACACAGA
CGTGGAGCGACTCCGAACCGTTTGGACCGAATTGCAGAATGTATGGATTG
CCCTCTATGGAACAACTTTGCCCACGGCAGCAGCCATCAATGGCCACGCC
CCCGCTGGCGGTTGCCTGCTGGCCACTGCCTGTGAGTATCGAGTGATGCG
GCCCAACTTTTTGATTGGATTAAACGAAGCCCAACTAGGAATCATTGCAC
CCAAGTGGCTAATGTCCGGCTTCGCTAGCATACTGCCCAAACGGGTGGCA
GAGCGAGCTCTCACCCAAGGACGTATGTTCACCACACAGGAGGCCTTTGA
AGTTGGCCTGATCGATGAGATCGCCAGCAGCAAGGAAGAGGCCTTGGAGA
AGTGCGCTGCCTTCATCGGCACCTTTGCTAAGGTCAATCCTTTGGCCCGC
GGACTGACCAAGCTCCAGTTCCGTGGCGACAACATTAAGGAGTTTGAGAT
GATTCGCGAGAAAGATATTGCTGACTTTGTAGCTCTAGCTTCTAGCCCGG
GAGTGCAGAAGGTTATGGGAGCTTATCTTGAAAAACTAAAGAACAAGGTC
AAGAAAGCAAGCTTTCTAGACC
BO04188.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-PA | 843 | CG4594-RA | 1..840 | 17..856 | 4175 | 99.8 | Plus |
CG4598-PA | 846 | CG4598-RA | 55..131 | 71..147 | 185 | 89.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-RB | 1103 | CG4594-RB | 123..962 | 17..856 | 4185 | 99.9 | Plus |
CG4594-RA | 1099 | CG4594-RA | 119..958 | 17..856 | 4185 | 99.9 | Plus |
CG4598-RB | 1216 | CG4598-RB | 151..803 | 71..723 | 595 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:11:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9920854..9921318 | 392..856 | 2310 | 99.8 | Plus |
2L | 23513712 | 2L | 9920374..9920602 | 17..245 | 1145 | 100 | Plus |
2L | 23513712 | 2L | 9920654..9920801 | 245..392 | 740 | 100 | Plus |
2L | 23513712 | 2L | 9918935..9919101 | 71..237 | 325 | 79.6 | Plus |
2L | 23513712 | 2L | 9919379..9919707 | 395..723 | 265 | 72 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:11:16 has no hits.
BO04188.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:20 Download gff for
BO04188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-PA | 1..843 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:12 Download gff for
BO04188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-PA | 1..843 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:04 Download gff for
BO04188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 113..958 | 10..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:46:06 Download gff for
BO04188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 113..958 | 10..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:46:06 Download gff for
BO04188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9920368..9920601 | 10..244 | 98 | -> | Plus |
2L | 9920654..9920800 | 245..391 | 100 | -> | Plus |
2L | 9920854..9921318 | 392..856 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:04 Download gff for
BO04188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9920368..9920601 | 10..244 | 98 | -> | Plus |
arm_2L | 9920654..9920800 | 245..391 | 100 | -> | Plus |
arm_2L | 9920854..9921318 | 392..856 | 99 | | Plus |
BO04188.complete Sequence
874 bp (874 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629655
> BO04188.complete
GAAGTTATCAGTCGACATGCTGCGCTCAAATTTCTTAAGATTGATGGCCC
ACGGGGCTCCAAGTAGATTAATGTCCACCGCCACCAAGCTGACCACAGTG
GAGATCAACGATAAGACAGGAATCGCTACTCTCACGATGAACCGGCCTCC
GGTGAATAGCCAAAATGTCCAGCTGCTTTTGGACCTGCAGACTTCCATTA
GCGAAATTGAGAACAATAAAAGTCGGGGTCTCATTTTAACCTCTGCCAGC
TCCAATGTGTTCTCAGCTGGCCTGGACATCTTTGAAATGTATAACACAGA
CGTGGAGCGACTCCGAACCGTTTGGACCGAATTGCAGAATGTATGGATTG
CCCTCTATGGAACAACTTTGCCCACGGCAGCAGCCATCAATGGCCACGCC
CCCGCTGGCGGTTGCCTGCTGGCCACTGCCTGTGAGTATCGAGTGATGCG
GCCCAACTTTTTGATTGGATTAAACGAAGCCCAACTAGGAATCATTGCAC
CCAAGTGGCTAATGTCCGGCTTCGCTAGCATACTGCCCAAACGGGTGGCA
GAGCGAGCTCTCACCCAAGGACGTATGTTCACCACACAGGAGGCCTTTGA
AGTTGGCCTGATCGATGAGATCGCCAGCAGCAAGGAAGAGGCCTTGGAGA
AGTGCGCTGCCTTCATCGGCACCTTTGCTAAGGTCAATCCTTTGGCCCGC
GGACTGACCAAGCTCCAGTTCCGTGGCGACAACATTAAGGAGTTTGAGAT
GATTCGCGAGAAAGATATTGCTGACTTTGTAGCTCTAGCTTCTAGCCCGG
GAGTGCAGAAGGTTATGGGAGCTTATCTTGAAAACCTAAAGAACAAGGTC
AAGAAAGCAAGCTTTCTAGACCAT
BO04188.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-RB | 843 | CG4594-PB | 1..840 | 17..856 | 4200 | 100 | Plus |
CG4594-RA | 843 | CG4594-PA | 1..840 | 17..856 | 4200 | 100 | Plus |
CG4598-RB | 846 | CG4598-PB | 55..707 | 71..723 | 595 | 72.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-RB | 1103 | CG4594-RB | 123..962 | 17..856 | 4200 | 100 | Plus |
CG4594-RA | 1099 | CG4594-RA | 119..958 | 17..856 | 4200 | 100 | Plus |
CG4598-RB | 1216 | CG4598-RB | 151..803 | 71..723 | 595 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9920854..9921318 | 392..856 | 2325 | 100 | Plus |
2L | 23513712 | 2L | 9920374..9920602 | 17..245 | 1145 | 100 | Plus |
2L | 23513712 | 2L | 9920654..9920801 | 245..392 | 740 | 100 | Plus |
2L | 23513712 | 2L | 9918935..9919101 | 71..237 | 325 | 79.6 | Plus |
2L | 23513712 | 2L | 9919379..9919707 | 395..723 | 265 | 72 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:39:25 has no hits.
BO04188.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:26 Download gff for
BO04188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 1..843 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:22 Download gff for
BO04188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 18..863 | 10..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:46 Download gff for
BO04188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 119..958 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:26 Download gff for
BO04188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 18..863 | 10..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:15 Download gff for
BO04188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 119..958 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:15 Download gff for
BO04188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9920374..9920601 | 17..244 | 100 | -> | Plus |
2L | 9920654..9920800 | 245..391 | 100 | -> | Plus |
2L | 9920854..9921318 | 392..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:46 Download gff for
BO04188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9920374..9920601 | 17..244 | 100 | -> | Plus |
arm_2L | 9920654..9920800 | 245..391 | 100 | -> | Plus |
arm_2L | 9920854..9921318 | 392..858 | 99 | | Plus |
BO04188.pep Sequence
Translation from 16 to 874
> BO04188.pep
MLRSNFLRLMAHGAPSRLMSTATKLTTVEINDKTGIATLTMNRPPVNSQN
VQLLLDLQTSISEIENNKSRGLILTSASSNVFSAGLDIFEMYNTDVERLR
TVWTELQNVWIALYGTTLPTAAAINGHAPAGGCLLATACEYRVMRPNFLI
GLNEAQLGIIAPKWLMSGFASILPKRVAERALTQGRMFTTQEAFEVGLID
EIASSKEEALEKCAAFIGTFAKVNPLARGLTKLQFRGDNIKEFEMIREKD
IADFVALASSPGVQKVMGAYLENLKNKVKKASFLDH
BO04188.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-PB | 280 | CG4594-PB | 1..280 | 1..280 | 1406 | 100 | Plus |
CG4594-PA | 280 | CG4594-PA | 1..280 | 1..280 | 1406 | 100 | Plus |
CG4598-PB | 281 | CG4598-PB | 1..280 | 1..280 | 1001 | 67.1 | Plus |
CG4598-PA | 281 | CG4598-PA | 1..280 | 1..280 | 1001 | 67.1 | Plus |
CG4592-PB | 287 | CG4592-PB | 23..286 | 7..277 | 755 | 54.6 | Plus |