Clone BO04201 Report

Search the DGRC for BO04201

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG7860-RA
Protein status:BO04201.pep: validated full length
Sequenced Size:1030

Clone Sequence Records

BO04201.3prime Sequence

943 bp (716 high quality bases) assembled on 2005-12-01

> BO04201.3prime
ATGGTCTAGAAAGCTTGCCGTGGAAAGTGTGAACGGTTCCTGGTGCACCA
CCTGACCCTCGATGCCGTAAAAGATGGTGCCATCCTGGACATATCCCCAC
GCCATGCGACGCGACGTGAAACTGATGCCCAGGTCACCGGAGTGGCCAAC
CACGATGGCGCCACCAGTGCCACCCAGCCGTTTGGTCATCTCGCGGCACT
CCTTGTCGGCGGCTGCCTGGGCGGACAGTCCCTGGTACTCCATGGCGGAC
AGAATGCGCTGGGCCAGATTGTAACGCATGAGGGTCTCGCCATGTCCGGT
GGTGGAGACGCCTCCACGGCAGTTATCCGCATAGGTGCCGCTGCCGAGAA
TGGGTGTGTCCCCAATGCGACCCGGCCACTTGCCGGTGATGCCGCCGGTG
GAGGTGCCCACCACTATTTGGCCCGATGCGTCCATGGCAACCGCTCCGAC
TGTTTCGCCACTGGGATCCGTTTTCGGCACCGGCTTGTCATCGGTCAGTT
CGGTGCGCGCGAAGAAGGGATCCTTGCCCTGGGCCACCTGATCCTCGAAT
TCCTTCAGCGTTAAGCGAGCCCCCTCGGTGACCAGTGCTCCCGGCTGCAG
TCGTTCGCTGCCCGTGGCTAGTGCCAGCTCCTGGGCCGCTGCGCCGCCAA
GAAAGGTGTGTCGCTGCTTCTCCATCAGGCGACGCGCCACTGTAATCGGG
TGCATCACATCCCGCAGCAGGGTTATGCAGCCGGCTCGCAAGTCGCGGCC
CTCCATTAAACTGGCCTCTAGCTCCACCTGGCCACTGGTGTTCAGGCAGG
AGCCGTAGCCGGCGTTGAAGTTCTCGTCCAGCTCCATGCTGCGCACCGCC
GCCTCTACGGCATCCAGGGCACTGCCTCCGCCGCTGCCATTGTCCGGACT
CAGTAGCCCCCAGGCGGAGCGCAGTGCCTGCTTAATGCCCGCG

BO04201.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7860-PA 999 CG7860-RA 72..996 943..19 4625 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7860-RB 1204 CG7860-RB 151..1075 943..19 4625 100 Minus
CG7860-RA 1377 CG7860-RA 324..1248 943..19 4625 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15569316..15570240 943..19 4625 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:13:35 has no hits.

BO04201.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:28 Download gff for BO04201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7860-PA 72..999 15..943 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:23 Download gff for BO04201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7860-PA 72..999 15..943 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:19 Download gff for BO04201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 324..1253 12..943 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:42:43 Download gff for BO04201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 324..1253 12..943 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:42:43 Download gff for BO04201.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15569316..15570245 12..943 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:19 Download gff for BO04201.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15463349..15464278 12..943 99   Minus

BO04201.5prime Sequence

898 bp (788 high quality bases) assembled on 2005-12-01

> BO04201.5prime
GAAGTTATCAGTCGACATGCCACGCCCAGTTCTGCTCATTCACGGTGGAG
CCGGTGATATATCGGACTCCAGGATAGCGGGCAAGTTCGCGGGCATTAAG
CAGGCACTGCGCTCCGCCTGGGGGCTACTGAGTCCGGACAATGGCAGCGG
CGGAGGCAGTGCCCTGGATGCCGTAGAGGCGGCGGTGCGCAGCATGGAGC
TGGACGAGAACTTCAACGCCGGCTACGGCTCCTGCCTGAACACCAGTGGC
CAGGTGGAGCTAGAGGCCAGTTTAATGGAGGGCCGCGACTTGCGAGCCGG
CTGCATAACCCTGCTGCGGGATGTGATGCACCCGATTACAGTGGCGCGTC
GCCTGATGGAGAAGCAGCGACACACCTTTCTTGGCGGCGCAGCGGCCCAG
GAGCTGGCACTAGCCACGGGCAGCGAACGACTGCAGCCGGGAGCACTGGT
CACCGAGGGGGCTCGCTTAACGCTGAAGGAATTCGAGGATCAGGTGGCCC
AGGGCAAGGATCCCTTCTTCGCGCGCACCGAACTGACCGATGACAAGCCG
GTGCCGAAAACGGATCCCAGTGGCGAAACAGTCGGAGCGGTTGCCATGGA
CGCATCGGGCCAAATAGTGGTGGGCACCTCCACCGGCGGCATCACCGGCA
AGTGGCCGGGTCGCATTGGGGACACACCCATTCTCGGCAGCGGCACCTAT
GCGGATAACTGCCGTGGAGGCGTCTCCACCACCGGACATGGCGAGACCCT
CATGCGTTACAATCTGGCCCAGCGCATTCTGTCCGCCATGGAGTACCAGG
GACTGTCCGCCCAGGCAGCCGCCGACAAGGAGTGCCGCGAGATGACCAAA
CGGCTGGGTGGCACTGGTGGCGCCATCGTGGTTGGGCACTCCGGTGAC

BO04201.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7860-PA 999 CG7860-RA 1..882 17..898 4385 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7860-RB 1204 CG7860-RB 75..961 12..898 4405 99.8 Plus
CG7860-RA 1377 CG7860-RA 248..1134 12..898 4405 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15569240..15570126 12..898 4405 99.8 Plus
Blast to na_te.dros performed on 2015-02-11 04:40:32 has no hits.

BO04201.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:29 Download gff for BO04201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7860-PA 1..882 17..898 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:25 Download gff for BO04201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7860-PA 1..882 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:54 Download gff for BO04201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 240..1134 1..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:29 Download gff for BO04201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 240..1134 1..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:29 Download gff for BO04201.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15569232..15570126 1..898 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:54 Download gff for BO04201.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15463265..15464159 1..898 99   Plus

BO04201.complete Sequence

1030 bp (1030 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629656

> BO04201.complete
GAAGTTATCAGTCGACATGCCACGCCCAGTTCTGCTCATTCACGGTGGAG
CCGGTGATATATCGGACTCCAGGATAGCGGGCAAGTTCGCGGGCATTAAG
CAGGCACTGCGCTCCGCCTGGGGGCTACTGAGTCCGGACAATGGCAGCGG
CGGAGGCAGTGCCCTGGATGCCGTAGAGGCGGCGGTGCGCAGCATGGAGC
TGGACGAGAACTTCAACGCCGGCTACGGCTCCTGCCTGAACACCAGTGGC
CAGGTGGAGCTAGAGGCCAGTTTAATGGAGGGCCGCGACTTGCGAGCCGG
CTGCATAACCCTGCTGCGGGATGTGATGCACCCGATTACAGTGGCGCGTC
GCCTGATGGAGAAGCAGCGACACACCTTTCTTGGCGGCGCAGCGGCCCAG
GAGCTGGCACTAGCCACGGGCAGCGAACGACTGCAGCCGGGAGCACTGGT
CACCGAGGGGGCTCGCTTAACGCTGAAGGAATTCGAGGATCAGGTGGCCC
AGGGCAAGGATCCCTTCTTCGCGCGCACCGAACTGACCGATGACAAGCCG
GTGCCGAAAACGGATCCCAGTGGCGAAACAGTCGGAGCGGTTGCCATGGA
CGCATCGGGCCAAATAGTGGTGGGCACCTCCACCGGCGGCATCACCGGCA
AGTGGCCGGGTCGCATTGGGGACACACCCATTCTCGGCAGCGGCACCTAT
GCGGATAACTGCCGTGGAGGCGTCTCCACCACCGGACATGGCGAGACCCT
CATGCGTTACAATCTGGCCCAGCGCATTCTGTCCGCCATGGAGTACCAGG
GACTGTCCGCCCAGGCAGCCGCCGACAAGGAGTGCCGCGAGATGACCAAA
CGGCTGGGTGGCACTGGTGGCGCCATCGTGGTTGGCCACTCCGGTGACCT
GGGCATCAGTTTCACGTCGCGTCGCATGGCGTGGGGATATGTCCAGGATG
GCACCATCTTTTACGGCATCGAGGGTCAGGTGGTGCACCAGGAACCGTTC
ACACTTTCCACGGCAAGCTTTCTAGACCAT

BO04201.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7860-RB 999 CG7860-PB 1..996 17..1012 4980 100 Plus
CG7860-RA 999 CG7860-PA 1..996 17..1012 4980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7860-RB 1204 CG7860-RB 75..1075 12..1012 4990 99.9 Plus
CG7860-RA 1377 CG7860-RA 248..1248 12..1012 4990 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15569240..15570240 12..1012 4990 99.9 Plus
Blast to na_te.dros performed on 2014-11-26 21:56:20 has no hits.

BO04201.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:05 Download gff for BO04201.complete
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 1..999 17..1016 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:56 Download gff for BO04201.complete
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 240..1253 1..1019 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:26 Download gff for BO04201.complete
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 253..1248 17..1014 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:05 Download gff for BO04201.complete
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 240..1253 1..1019 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:21 Download gff for BO04201.complete
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 253..1248 17..1014 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:21 Download gff for BO04201.complete
Subject Subject Range Query Range Percent Splice Strand
X 15569245..15570240 17..1014 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:26 Download gff for BO04201.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15463278..15464273 17..1014 99   Plus

BO04201.pep Sequence

Translation from 16 to 1030

> BO04201.pep
MPRPVLLIHGGAGDISDSRIAGKFAGIKQALRSAWGLLSPDNGSGGGSAL
DAVEAAVRSMELDENFNAGYGSCLNTSGQVELEASLMEGRDLRAGCITLL
RDVMHPITVARRLMEKQRHTFLGGAAAQELALATGSERLQPGALVTEGAR
LTLKEFEDQVAQGKDPFFARTELTDDKPVPKTDPSGETVGAVAMDASGQI
VVGTSTGGITGKWPGRIGDTPILGSGTYADNCRGGVSTTGHGETLMRYNL
AQRILSAMEYQGLSAQAAADKECREMTKRLGGTGGAIVVGHSGDLGISFT
SRRMAWGYVQDGTIFYGIEGQVVHQEPFTLSTASFLDH

BO04201.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7860-PB 332 CG7860-PB 1..332 1..332 1709 100 Plus
CG7860-PA 332 CG7860-PA 1..332 1..332 1709 100 Plus
Taspase1-PB 365 CG5241-PB 7..264 8..254 287 32.6 Plus
Taspase1-PA 365 CG5241-PA 7..264 8..254 287 32.6 Plus
CG1827-PD 393 CG1827-PD 72..351 34..296 263 29.4 Plus