Clone BO04202 Report

Search the DGRC for BO04202

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptPeritrophin-A-RA
Protein status:BO04202.pep: validated full length
Sequenced Size:724

Clone Sequence Records

BO04202.3prime Sequence

722 bp (721 high quality bases) assembled on 2005-12-01

> BO04202.3prime
ATGGTCTAGAAAGCTTGCCTTGCCGTAGTTGGCACAGCTGCCGCTGGCGT
ACTCCGGGTCCTCGCAGGTCAGCGTGTGCTCGTCGAAGACCTTGTCCTCG
CCGCAGCTGATCAGGCGCGGATGGCCCTCCACGCAAGTGATCAGGCGGTG
GCAGTCGCCGGCGACGGGGAACCGGGGGAAGGGCCAGAAGCGAGCGGCCA
CCGAGTTGGGGTCCACCTTGGTGGGGCACTTGAAGCCAACGACCGCCTCG
GGATTGCAGTGCTCCAGCAGCTGATCCGGCCAGTTGCAGCCATGGATCCT
TTCGTCGTAGGCCAACCCGGCGTCGCAGTCCTGCTCGTGCGGCTCACCGT
GGGCGCACTTGATGTAGGTGGTGGAGCAGTCCTTGGAGACAGCGTACAGA
CCGAACTGGTACTCGCAGGCCGGCGTGGAAATGGGAGTGGGATCCCACTG
GCGGCCCTTGCAGTCCACCGCCCAGTTGTAGTTGCAGTGGTTGTGCACCG
CGCCCTTGCCATCGAAGAGCAGTCCGTTCTCGCAGGTCTCCAGGGTCAGG
GTGCCGTTGGTGCAGAGGAAGAACTGGTCGCAGTTCTCCGTGTGGGCGTA
CGCCTGCACGCCGTACTTCTCGGGGCACTCCGGGGATCCCACGGCCAGGG
CATGTCCACAGGCAATCCAGGCCAGGATCAGGACGCTGCACACTTGGAAT
CGCTGCATGTCGACTGATAACT

BO04202.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG17058-PA 693 Peritrophin-A-RA 1..690 708..19 3450 100 Minus
CG17058-PB 693 Peritrophin-A-RB 1..690 708..19 3450 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
Peritrophin-A-RB 1348 CG17058-RB 235..926 710..19 3460 100 Minus
Peritrophin-A-RA 1238 CG17058-RA 125..816 710..19 3460 100 Minus
Peritrophin-A-RC 1406 CG17058-RC 125..589 710..246 2325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20247548..20247775 246..19 1140 100 Minus
X 23542271 X 20246904..20247120 657..441 1085 100 Minus
X 23542271 X 20247192..20247386 440..246 975 100 Minus
X 23542271 X 20244881..20244935 710..656 275 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:40:38 has no hits.

BO04202.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:30 Download gff for BO04202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17058-PA 1..693 18..708 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:26 Download gff for BO04202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17058-PB 1..693 18..708 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:56 Download gff for BO04202.3prime
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 119..816 19..716 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:05 Download gff for BO04202.3prime
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 119..816 19..716 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:05 Download gff for BO04202.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20246905..20247120 441..656 100 -> Minus
X 20247192..20247386 246..440 100 -> Minus
X 20247549..20247775 19..245 100   Minus
X 20244875..20244934 657..716 93 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:56 Download gff for BO04202.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20115949..20116008 657..716 93 -> Minus
arm_X 20117979..20118194 441..656 100 -> Minus
arm_X 20118266..20118460 246..440 100 -> Minus
arm_X 20118623..20118849 19..245 100   Minus

BO04202.5prime Sequence

722 bp (721 high quality bases) assembled on 2005-12-01

> BO04202.5prime
GAAGTTATCAGTCGACATGCAGCGATTCCAAGTGTGCAGCGTCCTGATCC
TGGCCTGGATTGCCTGTGGACATGCCCTGGCCGTGGGATCCCCGGAGTGC
CCCGAGAAGTACGGCGTGCAGGCGTACGCCCACACGGAGAACTGCGACCA
GTTCTTCCTCTGCACCAACGGCACCCTGACCCTGGAGACCTGCGAGAACG
GACTGCTCTTCGATGGCAAGGGCGCGGTGCACAACCACTGCAACTACAAC
TGGGCGGTGGACTGCAAGGGCCGCCAGTGGGATCCCACTCCCATTTCCAC
GCCGGCCTGCGAGTACCAGTTCGGTCTGTACGCTGTCTCCAAGGACTGCT
CCACCACCTACATCAAGTGCGCCCACGGTGAGCCGCACGAGCAGGACTGC
GACGCCGGGTTGGCCTACGACGAAAGGATCCATGGCTGCAACTGGCCGGA
TCAGCTGCTGGAGCACTGCAATCCCGAGGCGGTCGTTGGCTTCAAGTGCC
CCACCAAGGTGGACCCCAACTCGGTGGCCGCTCGCTTCTGGCCCTTCCCC
CGGTTCCCCGTCGCCGGCGACTGCCACCGCCTGATCACTTGCGTGGAGGG
CCATCCGCGCCTGATCAGCTGCGGCGAGGACAAGGTCTTCGACGAGCACA
CGCTGACCTGCGAGGACCCGGAGTACGCCAGCGGCAGCTGTGCCAACTAC
GGCAAGGCAAGCTTTCTAGACC

BO04202.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17058-PA 693 Peritrophin-A-RA 1..690 17..706 3450 100 Plus
CG17058-PB 693 Peritrophin-A-RB 1..690 17..706 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
Peritrophin-A-RB 1348 CG17058-RB 235..926 15..706 3460 100 Plus
Peritrophin-A-RA 1238 CG17058-RA 125..816 15..706 3460 100 Plus
Peritrophin-A-RC 1406 CG17058-RC 125..589 15..479 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20247548..20247775 479..706 1140 100 Plus
X 23542271 X 20246904..20247120 68..284 1085 100 Plus
X 23542271 X 20247192..20247386 285..479 975 100 Plus
X 23542271 X 20244881..20244935 15..69 275 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:29:15 has no hits.

BO04202.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:30 Download gff for BO04202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17058-PA 1..693 17..707 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:28 Download gff for BO04202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17058-PB 1..693 17..707 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:27 Download gff for BO04202.5prime
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 119..816 9..706 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:01 Download gff for BO04202.5prime
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 119..816 9..706 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:01 Download gff for BO04202.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20244875..20244934 9..68 93 -> Plus
X 20246905..20247120 69..284 100 -> Plus
X 20247192..20247386 285..479 100 -> Plus
X 20247549..20247775 480..706 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:27 Download gff for BO04202.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20115949..20116008 9..68 93 -> Plus
arm_X 20117979..20118194 69..284 100 -> Plus
arm_X 20118266..20118460 285..479 100 -> Plus
arm_X 20118623..20118849 480..706 100   Plus

BO04202.complete Sequence

724 bp (724 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629657

> BO04202.complete
GAAGTTATCAGTCGACATGCAGCGATTCCAAGTGTGCAGCGTCCTGATCC
TGGCCTGGATTGCCTGTGGACATGCCCTGGCCGTGGGATCCCCGGAGTGC
CCCGAGAAGTACGGCGTGCAGGCGTACGCCCACACGGAGAACTGCGACCA
GTTCTTCCTCTGCACCAACGGCACCCTGACCCTGGAGACCTGCGAGAACG
GACTGCTCTTCGATGGCAAGGGCGCGGTGCACAACCACTGCAACTACAAC
TGGGCGGTGGACTGCAAGGGCCGCCAGTGGGATCCCACTCCCATTTCCAC
GCCGGCCTGCGAGTACCAGTTCGGTCTGTACGCTGTCTCCAAGGACTGCT
CCACCACCTACATCAAGTGCGCCCACGGTGAGCCGCACGAGCAGGACTGC
GACGCCGGGTTGGCCTACGACGAAAGGATCCATGGCTGCAACTGGCCGGA
TCAGCTGCTGGAGCACTGCAATCCCGAGGCGGTCGTTGGCTTCAAGTGCC
CCACCAAGGTGGACCCCAACTCGGTGGCCGCTCGCTTCTGGCCCTTCCCC
CGGTTCCCCGTCGCCGGCGACTGCCACCGCCTGATCACTTGCGTGGAGGG
CCATCCGCGCCTGATCAGCTGCGGCGAGGACAAGGTCTTCGACGAGCACA
CGCTGACCTGCGAGGACCCGGAGTACGCCAGCGGCAGCTGTGCCAACTAC
GGCAAGGCAAGCTTTCTAGACCAT

BO04202.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
Peritrophin-A-RB 693 CG17058-PB 1..690 17..706 3450 100 Plus
Peritrophin-A-RA 693 CG17058-PA 1..690 17..706 3450 100 Plus
Peritrophin-A-RC 474 CG17058-PC 1..463 17..479 2315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
Peritrophin-A-RB 1348 CG17058-RB 235..926 15..706 3460 100 Plus
Peritrophin-A-RA 1238 CG17058-RA 125..816 15..706 3460 100 Plus
Peritrophin-A-RC 1406 CG17058-RC 125..589 15..479 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20247548..20247775 479..706 1140 100 Plus
X 23542271 X 20246904..20247120 68..284 1085 100 Plus
X 23542271 X 20247192..20247386 285..479 975 100 Plus
X 23542271 X 20244881..20244935 15..69 275 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:17:35 has no hits.

BO04202.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:23 Download gff for BO04202.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RB 1..693 17..707 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:21 Download gff for BO04202.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RB 223..920 9..706 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:05 Download gff for BO04202.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 127..816 17..708 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:23 Download gff for BO04202.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RB 223..920 9..706 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:42 Download gff for BO04202.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 127..816 17..708 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:42 Download gff for BO04202.complete
Subject Subject Range Query Range Percent Splice Strand
X 20244883..20244934 17..68 100 -> Plus
X 20246905..20247120 69..284 100 -> Plus
X 20247192..20247386 285..479 100 -> Plus
X 20247549..20247775 480..708 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:05 Download gff for BO04202.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20115957..20116008 17..68 100 -> Plus
arm_X 20117979..20118194 69..284 100 -> Plus
arm_X 20118266..20118460 285..479 100 -> Plus
arm_X 20118623..20118849 480..708 99   Plus

BO04202.pep Sequence

Translation from 16 to 724

> BO04202.pep
MQRFQVCSVLILAWIACGHALAVGSPECPEKYGVQAYAHTENCDQFFLCT
NGTLTLETCENGLLFDGKGAVHNHCNYNWAVDCKGRQWDPTPISTPACEY
QFGLYAVSKDCSTTYIKCAHGEPHEQDCDAGLAYDERIHGCNWPDQLLEH
CNPEAVVGFKCPTKVDPNSVAARFWPFPRFPVAGDCHRLITCVEGHPRLI
SCGEDKVFDEHTLTCEDPEYASGSCANYGKASFLDH

BO04202.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Peritrophin-A-PB 230 CG17058-PB 1..230 1..230 1329 100 Plus
Peritrophin-A-PA 230 CG17058-PA 1..230 1..230 1329 100 Plus
Peritrophin-A-PC 157 CG17058-PC 1..157 1..157 897 98.1 Plus
Gasp-PB 235 CG10287-PB 1..221 1..228 322 34.6 Plus
Gasp-PA 258 CG10287-PA 1..221 1..228 322 34.6 Plus