Clone Sequence Records
BO04202.3prime Sequence
722 bp (721 high quality bases) assembled on 2005-12-01
> BO04202.3prime
ATGGTCTAGAAAGCTTGCCTTGCCGTAGTTGGCACAGCTGCCGCTGGCGT
ACTCCGGGTCCTCGCAGGTCAGCGTGTGCTCGTCGAAGACCTTGTCCTCG
CCGCAGCTGATCAGGCGCGGATGGCCCTCCACGCAAGTGATCAGGCGGTG
GCAGTCGCCGGCGACGGGGAACCGGGGGAAGGGCCAGAAGCGAGCGGCCA
CCGAGTTGGGGTCCACCTTGGTGGGGCACTTGAAGCCAACGACCGCCTCG
GGATTGCAGTGCTCCAGCAGCTGATCCGGCCAGTTGCAGCCATGGATCCT
TTCGTCGTAGGCCAACCCGGCGTCGCAGTCCTGCTCGTGCGGCTCACCGT
GGGCGCACTTGATGTAGGTGGTGGAGCAGTCCTTGGAGACAGCGTACAGA
CCGAACTGGTACTCGCAGGCCGGCGTGGAAATGGGAGTGGGATCCCACTG
GCGGCCCTTGCAGTCCACCGCCCAGTTGTAGTTGCAGTGGTTGTGCACCG
CGCCCTTGCCATCGAAGAGCAGTCCGTTCTCGCAGGTCTCCAGGGTCAGG
GTGCCGTTGGTGCAGAGGAAGAACTGGTCGCAGTTCTCCGTGTGGGCGTA
CGCCTGCACGCCGTACTTCTCGGGGCACTCCGGGGATCCCACGGCCAGGG
CATGTCCACAGGCAATCCAGGCCAGGATCAGGACGCTGCACACTTGGAAT
CGCTGCATGTCGACTGATAACT
BO04202.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17058-PA | 693 | Peritrophin-A-RA | 1..690 | 708..19 | 3450 | 100 | Minus |
CG17058-PB | 693 | Peritrophin-A-RB | 1..690 | 708..19 | 3450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Peritrophin-A-RB | 1348 | CG17058-RB | 235..926 | 710..19 | 3460 | 100 | Minus |
Peritrophin-A-RA | 1238 | CG17058-RA | 125..816 | 710..19 | 3460 | 100 | Minus |
Peritrophin-A-RC | 1406 | CG17058-RC | 125..589 | 710..246 | 2325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20247548..20247775 | 246..19 | 1140 | 100 | Minus |
X | 23542271 | X | 20246904..20247120 | 657..441 | 1085 | 100 | Minus |
X | 23542271 | X | 20247192..20247386 | 440..246 | 975 | 100 | Minus |
X | 23542271 | X | 20244881..20244935 | 710..656 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:40:38 has no hits.
BO04202.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:30 Download gff for
BO04202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17058-PA | 1..693 | 18..708 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:26 Download gff for
BO04202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17058-PB | 1..693 | 18..708 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:56 Download gff for
BO04202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peritrophin-A-RA | 119..816 | 19..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:05 Download gff for
BO04202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peritrophin-A-RA | 119..816 | 19..716 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:05 Download gff for
BO04202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20246905..20247120 | 441..656 | 100 | -> | Minus |
X | 20247192..20247386 | 246..440 | 100 | -> | Minus |
X | 20247549..20247775 | 19..245 | 100 | | Minus |
X | 20244875..20244934 | 657..716 | 93 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:56 Download gff for
BO04202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20115949..20116008 | 657..716 | 93 | -> | Minus |
arm_X | 20117979..20118194 | 441..656 | 100 | -> | Minus |
arm_X | 20118266..20118460 | 246..440 | 100 | -> | Minus |
arm_X | 20118623..20118849 | 19..245 | 100 | | Minus |
BO04202.5prime Sequence
722 bp (721 high quality bases) assembled on 2005-12-01
> BO04202.5prime
GAAGTTATCAGTCGACATGCAGCGATTCCAAGTGTGCAGCGTCCTGATCC
TGGCCTGGATTGCCTGTGGACATGCCCTGGCCGTGGGATCCCCGGAGTGC
CCCGAGAAGTACGGCGTGCAGGCGTACGCCCACACGGAGAACTGCGACCA
GTTCTTCCTCTGCACCAACGGCACCCTGACCCTGGAGACCTGCGAGAACG
GACTGCTCTTCGATGGCAAGGGCGCGGTGCACAACCACTGCAACTACAAC
TGGGCGGTGGACTGCAAGGGCCGCCAGTGGGATCCCACTCCCATTTCCAC
GCCGGCCTGCGAGTACCAGTTCGGTCTGTACGCTGTCTCCAAGGACTGCT
CCACCACCTACATCAAGTGCGCCCACGGTGAGCCGCACGAGCAGGACTGC
GACGCCGGGTTGGCCTACGACGAAAGGATCCATGGCTGCAACTGGCCGGA
TCAGCTGCTGGAGCACTGCAATCCCGAGGCGGTCGTTGGCTTCAAGTGCC
CCACCAAGGTGGACCCCAACTCGGTGGCCGCTCGCTTCTGGCCCTTCCCC
CGGTTCCCCGTCGCCGGCGACTGCCACCGCCTGATCACTTGCGTGGAGGG
CCATCCGCGCCTGATCAGCTGCGGCGAGGACAAGGTCTTCGACGAGCACA
CGCTGACCTGCGAGGACCCGGAGTACGCCAGCGGCAGCTGTGCCAACTAC
GGCAAGGCAAGCTTTCTAGACC
BO04202.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17058-PA | 693 | Peritrophin-A-RA | 1..690 | 17..706 | 3450 | 100 | Plus |
CG17058-PB | 693 | Peritrophin-A-RB | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Peritrophin-A-RB | 1348 | CG17058-RB | 235..926 | 15..706 | 3460 | 100 | Plus |
Peritrophin-A-RA | 1238 | CG17058-RA | 125..816 | 15..706 | 3460 | 100 | Plus |
Peritrophin-A-RC | 1406 | CG17058-RC | 125..589 | 15..479 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20247548..20247775 | 479..706 | 1140 | 100 | Plus |
X | 23542271 | X | 20246904..20247120 | 68..284 | 1085 | 100 | Plus |
X | 23542271 | X | 20247192..20247386 | 285..479 | 975 | 100 | Plus |
X | 23542271 | X | 20244881..20244935 | 15..69 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:29:15 has no hits.
BO04202.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:30 Download gff for
BO04202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17058-PA | 1..693 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:28 Download gff for
BO04202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17058-PB | 1..693 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:27 Download gff for
BO04202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peritrophin-A-RA | 119..816 | 9..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:01 Download gff for
BO04202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peritrophin-A-RA | 119..816 | 9..706 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:01 Download gff for
BO04202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20244875..20244934 | 9..68 | 93 | -> | Plus |
X | 20246905..20247120 | 69..284 | 100 | -> | Plus |
X | 20247192..20247386 | 285..479 | 100 | -> | Plus |
X | 20247549..20247775 | 480..706 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:27 Download gff for
BO04202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20115949..20116008 | 9..68 | 93 | -> | Plus |
arm_X | 20117979..20118194 | 69..284 | 100 | -> | Plus |
arm_X | 20118266..20118460 | 285..479 | 100 | -> | Plus |
arm_X | 20118623..20118849 | 480..706 | 100 | | Plus |
BO04202.complete Sequence
724 bp (724 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629657
> BO04202.complete
GAAGTTATCAGTCGACATGCAGCGATTCCAAGTGTGCAGCGTCCTGATCC
TGGCCTGGATTGCCTGTGGACATGCCCTGGCCGTGGGATCCCCGGAGTGC
CCCGAGAAGTACGGCGTGCAGGCGTACGCCCACACGGAGAACTGCGACCA
GTTCTTCCTCTGCACCAACGGCACCCTGACCCTGGAGACCTGCGAGAACG
GACTGCTCTTCGATGGCAAGGGCGCGGTGCACAACCACTGCAACTACAAC
TGGGCGGTGGACTGCAAGGGCCGCCAGTGGGATCCCACTCCCATTTCCAC
GCCGGCCTGCGAGTACCAGTTCGGTCTGTACGCTGTCTCCAAGGACTGCT
CCACCACCTACATCAAGTGCGCCCACGGTGAGCCGCACGAGCAGGACTGC
GACGCCGGGTTGGCCTACGACGAAAGGATCCATGGCTGCAACTGGCCGGA
TCAGCTGCTGGAGCACTGCAATCCCGAGGCGGTCGTTGGCTTCAAGTGCC
CCACCAAGGTGGACCCCAACTCGGTGGCCGCTCGCTTCTGGCCCTTCCCC
CGGTTCCCCGTCGCCGGCGACTGCCACCGCCTGATCACTTGCGTGGAGGG
CCATCCGCGCCTGATCAGCTGCGGCGAGGACAAGGTCTTCGACGAGCACA
CGCTGACCTGCGAGGACCCGGAGTACGCCAGCGGCAGCTGTGCCAACTAC
GGCAAGGCAAGCTTTCTAGACCAT
BO04202.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Peritrophin-A-RB | 693 | CG17058-PB | 1..690 | 17..706 | 3450 | 100 | Plus |
Peritrophin-A-RA | 693 | CG17058-PA | 1..690 | 17..706 | 3450 | 100 | Plus |
Peritrophin-A-RC | 474 | CG17058-PC | 1..463 | 17..479 | 2315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Peritrophin-A-RB | 1348 | CG17058-RB | 235..926 | 15..706 | 3460 | 100 | Plus |
Peritrophin-A-RA | 1238 | CG17058-RA | 125..816 | 15..706 | 3460 | 100 | Plus |
Peritrophin-A-RC | 1406 | CG17058-RC | 125..589 | 15..479 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20247548..20247775 | 479..706 | 1140 | 100 | Plus |
X | 23542271 | X | 20246904..20247120 | 68..284 | 1085 | 100 | Plus |
X | 23542271 | X | 20247192..20247386 | 285..479 | 975 | 100 | Plus |
X | 23542271 | X | 20244881..20244935 | 15..69 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:17:35 has no hits.
BO04202.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:23 Download gff for
BO04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peritrophin-A-RB | 1..693 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:21 Download gff for
BO04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peritrophin-A-RB | 223..920 | 9..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:05 Download gff for
BO04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peritrophin-A-RA | 127..816 | 17..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:23 Download gff for
BO04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peritrophin-A-RB | 223..920 | 9..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:42 Download gff for
BO04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peritrophin-A-RA | 127..816 | 17..708 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:42 Download gff for
BO04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20244883..20244934 | 17..68 | 100 | -> | Plus |
X | 20246905..20247120 | 69..284 | 100 | -> | Plus |
X | 20247192..20247386 | 285..479 | 100 | -> | Plus |
X | 20247549..20247775 | 480..708 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:05 Download gff for
BO04202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20115957..20116008 | 17..68 | 100 | -> | Plus |
arm_X | 20117979..20118194 | 69..284 | 100 | -> | Plus |
arm_X | 20118266..20118460 | 285..479 | 100 | -> | Plus |
arm_X | 20118623..20118849 | 480..708 | 99 | | Plus |
BO04202.pep Sequence
Translation from 16 to 724
> BO04202.pep
MQRFQVCSVLILAWIACGHALAVGSPECPEKYGVQAYAHTENCDQFFLCT
NGTLTLETCENGLLFDGKGAVHNHCNYNWAVDCKGRQWDPTPISTPACEY
QFGLYAVSKDCSTTYIKCAHGEPHEQDCDAGLAYDERIHGCNWPDQLLEH
CNPEAVVGFKCPTKVDPNSVAARFWPFPRFPVAGDCHRLITCVEGHPRLI
SCGEDKVFDEHTLTCEDPEYASGSCANYGKASFLDH
BO04202.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Peritrophin-A-PB | 230 | CG17058-PB | 1..230 | 1..230 | 1329 | 100 | Plus |
Peritrophin-A-PA | 230 | CG17058-PA | 1..230 | 1..230 | 1329 | 100 | Plus |
Peritrophin-A-PC | 157 | CG17058-PC | 1..157 | 1..157 | 897 | 98.1 | Plus |
Gasp-PB | 235 | CG10287-PB | 1..221 | 1..228 | 322 | 34.6 | Plus |
Gasp-PA | 258 | CG10287-PA | 1..221 | 1..228 | 322 | 34.6 | Plus |