Clone BO04203 Report

Search the DGRC for BO04203

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptHsp26-RA
Protein status:BO04203.pep: validated full length
Sequenced Size:658

Clone Sequence Records

BO04203.3prime Sequence

656 bp (655 high quality bases) assembled on 2005-12-01

> BO04203.3prime
ATGGTCTAGAAAGCTTGCCTTGTCCTTGCCGTTGGGTGCTCCGTTCTCCT
TGCCCTTCACCTCGCTTTCATTTGCCTTAACGTTGAGGTGAGCGGGTCCC
ACTTGCTGAATTTGAATGATGCGCTCCTTGGACTTGTCCTCGACGGCCTG
CGGCTTGGGAATACTGACGGTGAGCACGCCATCCGACGACAGCTGCGAGA
CCACTTGCTCCGCCTTGTAGCCATCGGGAACCTTGTAGCGGCGCACAAAG
TGGCGCATGATGTGACCATGGTCGTCCTGGCGTTCCTCATGCTTGCCCTC
GACCAAGATGGAGTCGTCCACCACCTTCACGTTGAGCTCACTGGGCTTGA
ACTGGGCGACGTCCATGCACACCTGGAATCCATCCTTGCCCACATGGGCG
GTTGCCGGCCAGTGAATGTCGTTGCGGTTGGCCATCTCGCGCCGCAAAGC
CAAAACCTGGCCGGCGGGCGACGATGGGCATATCGGCGATGCGCAAGGGC
ATCCGTTGATGGAACGGCGCTGCTGAGTGCCAAGGGGCAGCACGTAGCGG
GAATGCGGATGCAATCCCAGTCCAAGCTCGTAGATGGGGCTGCGGGGCTC
CTGGAGTTCATCCACAAGCGAAAGCAGAGTAGATAGCGACATGTCGACTG
ATAACT

BO04203.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4183-PA 627 Hsp26-RA 1..624 642..19 3120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp26-RB 1010 CG4183-RB 240..863 642..19 3120 100 Minus
Hsp26-RA 958 CG4183-RA 188..811 642..19 3120 100 Minus
Hsp23-RB 884 CG4463-RB 318..630 387..75 350 74.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9376565..9377188 19..642 3120 100 Plus
3L 28110227 3L 9382199..9382511 387..75 335 73.8 Minus
3L 28110227 3L 9384438..9384590 393..241 330 81 Minus
Blast to na_te.dros performed on 2015-02-13 15:11:28 has no hits.

BO04203.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:31 Download gff for BO04203.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp26-PA 1..627 15..642 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:29 Download gff for BO04203.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4183-PA 1..627 15..642 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:07 Download gff for BO04203.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 182..816 14..648 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:46:10 Download gff for BO04203.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 182..816 14..648 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:46:10 Download gff for BO04203.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9376560..9377194 14..648 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:07 Download gff for BO04203.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9369660..9370294 14..648 99   Plus

BO04203.5prime Sequence

656 bp (655 high quality bases) assembled on 2005-12-01

> BO04203.5prime
GAAGTTATCAGTCGACATGTCGCTATCTACTCTGCTTTCGCTTGTGGATG
AACTCCAGGAGCCCCGCAGCCCCATCTACGAGCTTGGACTGGGATTGCAT
CCGCATTCCCGCTACGTGCTGCCCCTTGGCACTCAGCAGCGCCGTTCCAT
CAACGGATGCCCTTGCGCATCGCCGATATGCCCATCGTCGCCCGCCGGCC
AGGTTTTGGCTTTGCGGCGCGAGATGGCCAACCGCAACGACATTCACTGG
CCGGCAACCGCCCATGTGGGCAAGGATGGATTCCAGGTGTGCATGGACGT
CGCCCAGTTCAAGCCCAGTGAGCTCAACGTGAAGGTGGTGGACGACTCCA
TCTTGGTCGAGGGCAAGCATGAGGAACGCCAGGACGACCATGGTCACATC
ATGCGCCACTTTGTGCGCCGCTACAAGGTTCCCGATGGCTACAAGGCGGA
GCAAGTGGTCTCGCAGCTGTCGTCGGATGGCGTGCTCACCGTCAGTATTC
CCAAGCCGCAGGCCGTCGAGGACAAGTCCAAGGAGCGCATCATTCAAATT
CAGCAAGTGGGACCCGCTCACCTCAACGTTAAGGCAAATGAAAGCGAGGT
GAAGGGCAAGGAGAACGGAGCACCCAACGGCAAGGACAAGGCAAGCTTTC
TAGACC

BO04203.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4183-PA 627 Hsp26-RA 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp26-RB 1010 CG4183-RB 240..863 17..640 3120 100 Plus
Hsp26-RA 958 CG4183-RA 188..811 17..640 3120 100 Plus
Hsp23-RB 884 CG4463-RB 318..630 272..584 350 74.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9376565..9377188 640..17 3120 100 Minus
3L 28110227 3L 9382199..9382511 272..584 335 73.8 Plus
3L 28110227 3L 9384438..9384590 266..418 330 81 Plus
Blast to na_te.dros performed on 2015-02-12 06:15:45 has no hits.

BO04203.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:56:32 Download gff for BO04203.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp26-PA 1..627 17..644 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:30 Download gff for BO04203.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4183-PA 1..627 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:27 Download gff for BO04203.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 182..816 11..645 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:58:04 Download gff for BO04203.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 182..816 11..645 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:58:04 Download gff for BO04203.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9376560..9377194 11..645 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:27 Download gff for BO04203.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9369660..9370294 11..645 99   Minus

BO04203.complete Sequence

658 bp (658 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629658

> BO04203.complete
GAAGTTATCAGTCGACATGTCGCTATCTACTCTGCTTTCGCTTGTGGATG
AACTCCAGGAGCCCCGCAGCCCCATCTACGAGCTTGGACTGGGATTGCAT
CCGCATTCCCGCTACGTGCTGCCCCTTGGCACTCAGCAGCGCCGTTCCAT
CAACGGATGCCCTTGCGCATCGCCGATATGCCCATCGTCGCCCGCCGGCC
AGGTTTTGGCTTTGCGGCGCGAGATGGCCAACCGCAACGACATTCACTGG
CCGGCAACCGCCCATGTGGGCAAGGATGGATTCCAGGTGTGCATGGACGT
CGCCCAGTTCAAGCCCAGTGAGCTCAACGTGAAGGTGGTGGACGACTCCA
TCTTGGTCGAGGGCAAGCATGAGGAACGCCAGGACGACCATGGTCACATC
ATGCGCCACTTTGTGCGCCGCTACAAGGTTCCCGATGGCTACAAGGCGGA
GCAAGTGGTCTCGCAGCTGTCGTCGGATGGCGTGCTCACCGTCAGTATTC
CCAAGCCGCAGGCCGTCGAGGACAAGTCCAAGGAGCGCATCATTCAAATT
CAGCAAGTGGGACCCGCTCACCTCAACGTTAAGGCAAATGAAAGCGAGGT
GAAGGGCAAGGAGAACGGAGCACCCAACGGCAAGGACAAGGCAAGCTTTC
TAGACCAT

BO04203.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp26-RB 627 CG4183-PB 1..624 17..640 3120 100 Plus
Hsp26-RA 627 CG4183-PA 1..624 17..640 3120 100 Plus
Hsp23-RB 561 CG4463-PB 202..514 272..584 335 73.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp26-RB 1010 CG4183-RB 240..863 17..640 3120 100 Plus
Hsp26-RA 958 CG4183-RA 188..811 17..640 3120 100 Plus
Hsp23-RB 884 CG4463-RB 318..630 272..584 335 73.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9376565..9377188 640..17 3120 100 Minus
3L 28110227 3L 9382199..9382511 272..584 335 73.8 Plus
3L 28110227 3L 9384438..9384590 266..418 330 81 Plus
Blast to na_te.dros performed on 2014-11-27 14:33:35 has no hits.

BO04203.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:21 Download gff for BO04203.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 1..627 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:36 Download gff for BO04203.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 234..868 11..645 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:25 Download gff for BO04203.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 188..811 17..642 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:22 Download gff for BO04203.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 234..868 11..645 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:16 Download gff for BO04203.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp26-RA 188..811 17..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:16 Download gff for BO04203.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9376563..9377188 17..642 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:25 Download gff for BO04203.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9369663..9370288 17..642 99   Minus

BO04203.pep Sequence

Translation from 16 to 658

> BO04203.pep
MSLSTLLSLVDELQEPRSPIYELGLGLHPHSRYVLPLGTQQRRSINGCPC
ASPICPSSPAGQVLALRREMANRNDIHWPATAHVGKDGFQVCMDVAQFKP
SELNVKVVDDSILVEGKHEERQDDHGHIMRHFVRRYKVPDGYKAEQVVSQ
LSSDGVLTVSIPKPQAVEDKSKERIIQIQQVGPAHLNVKANESEVKGKEN
GAPNGKDKASFLDH

BO04203.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp26-PB 208 CG4183-PB 1..208 1..208 1089 100 Plus
Hsp26-PA 208 CG4183-PA 1..208 1..208 1089 100 Plus
Hsp23-PB 186 CG4463-PB 62..183 80..201 457 68.9 Plus
Hsp23-PA 186 CG4463-PA 62..183 80..201 457 68.9 Plus
Hsp27-PB 213 CG4466-PB 1..205 1..202 396 47 Plus